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Kumar S, Weiß R, Zeller F, Neudecker T. Trapping the Transition State in a [2,3]-Sigmatropic Rearrangement by Applying Pressure. ACS OMEGA 2022; 7:45208-45214. [PMID: 36530272 PMCID: PMC9753542 DOI: 10.1021/acsomega.2c05664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 11/10/2022] [Indexed: 06/17/2023]
Abstract
Transition states are of central importance in chemistry. While they are, by definition, transient species, it has been shown before that it is possible to "trap" transition states by applying stretching forces. We here demonstrate that the task of transforming the transition state of a chemical reaction into a minimum on the potential energy surface can be achieved using hydrostatic pressure. We apply the computational extended hydrostatic compression force field (X-HCFF) approach to the educt of a [2,3]-sigmatropic rearrangement in both static and dynamic calculations and find that the five-membered cyclic transition state of this reaction becomes a minimum at pressures in the range between 100 and 150 GPa. Born-Oppenheimer molecular dynamics (BOMD) simulations suggest that slow decompression leads to a 70:30 mix of the product and the educt of the sigmatropic rearrangement. Our findings are discussed in terms of geometric parameters and electronic rearrangements throughout the reaction. To provide reference data for experimental investigations, we simulated the IR, Raman, and time-resolved UV/vis absorption spectra for the educt, transition state, and product. We speculate that the trapping of transition states by using pressure is generally possible if the transition state of a chemical reaction has a more condensed geometry than both the educt and the product, which paves the way for new ways of initiating chemical reactions.
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Affiliation(s)
- Sourabh Kumar
- Institute
for Physical and Theoretical Chemistry, University of Bremen, Leobener Straße NW2, D-28359 Bremen, Germany
| | - Rahel Weiß
- Institute
for Physical and Theoretical Chemistry, University of Bremen, Leobener Straße NW2, D-28359 Bremen, Germany
| | - Felix Zeller
- Institute
for Physical and Theoretical Chemistry, University of Bremen, Leobener Straße NW2, D-28359 Bremen, Germany
| | - Tim Neudecker
- Institute
for Physical and Theoretical Chemistry, University of Bremen, Leobener Straße NW2, D-28359 Bremen, Germany
- Bremen
Center for Computational Materials Science, University of Bremen, Am Fallturm 1, D-28359 Bremen, Germany
- MAPEX
Center for Materials and Processes, University
of Bremen, Bibliothekstraße
1, D-28359 Bremen, Germany
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2
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Bujak M, Podsiadło M, Katrusiak A. Loose crystals engineered by mismatched halogen bonds in hexachloroethane. CrystEngComm 2018. [DOI: 10.1039/c7ce01980g] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The shortest intermolecular contacts in the engineered loose crystal of hexachloroethane are longer than the sum of van der Waals radii, reached only at the pressure of 1.2 GPa.
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Affiliation(s)
- Maciej Bujak
- Faculty of Chemistry
- University of Opole
- 45-052 Opole
- Poland
| | - Marcin Podsiadło
- Faculty of Chemistry
- Adam Mickiewicz University
- 61-614 Poznań
- Poland
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3
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Mugridge JS, Zahl A, van Eldik R, Bergman RG, Raymond KN. Solvent and Pressure Effects on the Motions of Encapsulated Guests: Tuning the Flexibility of a Supramolecular Host. J Am Chem Soc 2013; 135:4299-306. [DOI: 10.1021/ja309949q] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Jeffrey S. Mugridge
- Department of Chemistry, University of California—Berkeley, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, United States
| | - Achim Zahl
- Inorganic Chemistry, Department
of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany
| | - Rudi van Eldik
- Inorganic Chemistry, Department
of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany
| | - Robert G. Bergman
- Department of Chemistry, University of California—Berkeley, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, United States
| | - Kenneth N. Raymond
- Department of Chemistry, University of California—Berkeley, and Chemical
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, United States
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Kloss T, Heil J, Kast SM. Quantum Chemistry in Solution by Combining 3D Integral Equation Theory with a Cluster Embedding Approach. J Phys Chem B 2008; 112:4337-43. [DOI: 10.1021/jp710680m] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Thomas Kloss
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstraβe 20, 64287 Darmstadt, Germany
| | - Jochen Heil
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstraβe 20, 64287 Darmstadt, Germany
| | - Stefan M. Kast
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstraβe 20, 64287 Darmstadt, Germany
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Sabharwal RJ, Huang Y, Song Y. High-pressure Induced Conformational and Phase Transformations of 1,2-Dichloroethane Probed by Raman Spectroscopy. J Phys Chem B 2007; 111:7267-73. [PMID: 17523618 DOI: 10.1021/jp068287v] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
1,2-Dichloroethane (DCE) was loaded into diamond anvil cells and compressed up to 30 GPa at room temperature. Pressure-induced transformations were probed using Raman spectroscopy. At pressures below 0.6 GPa, fluid DCE exists in two conformations, gauche and trans in equilibrium, which is shifted to gauche on compression. DCE transforms to a solid phase with exclusive trans conformation upon further compression. All the characteristic Raman shifts remain constant in fluid phase and move to higher frequencies in the solid phase with increasing pressure. At about 4-5 GPa, DCE transforms from a possible disordered phase into a crystalline phase as evidenced by the observation of several lattice modes and peak narrowing. At 8-9 GPa, dramatic changes in Raman patterns of DCE were observed. The splitting of the C-C-Cl bending mode at 325 cm-1, together with the observation of inactive internal mode at 684 cm-1 as well as new lattice modes indicates another pressure-induced phase transformation. All Raman modes exhibit significant changes in pressure dependence at the transformation pressure. The new phase remains crystalline, but likely with a lower symmetry. The observed transformations are reversible in the entire pressure region upon decompression.
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Affiliation(s)
- Robert J Sabharwal
- Department of Chemistry, The University of Western Ontario, London, Ontario, Canada
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Lee JY, Yoshida N, Hirata F. Conformational Equilibrium of 1,2-Dichloroethane in Water: Comparison of PCM and RISM-SCF Methods. J Phys Chem B 2006; 110:16018-25. [PMID: 16898759 DOI: 10.1021/jp0606762] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The RISM-SCF and polarizable continuum model (PCM) approaches have been applied to study the conformational equilibrium of 1,2-dichloroethane (DCE) in water. Both the electron correlation effect and basis sets play an important role in the relative energies of the gauche and trans conformers in gas and solution phases. Both PCM and RISM-MP2 methods resulted in a consistent trend with the previous experimental and theoretical studies that the population of the gauche conformer increases in going from the gas phase to the aqueous solution. However, the PCM treatment could not describe the solvent effect completely in that the sign of the relative free energy of the gauche and trans forms is opposite to the most recent experimental and theoretical data, while the RISM-MP2 gives the right sign in the free energy difference. We found that the larger excess chemical potential gain (by ca. -4.1 kcal/mol) for the gauche conformer is large enough to result in the gauche preference of DCE in water, though it has to compensate for more solute reorganization energy (approximately 1.6 kcal/mol) and overcome the energy difference (approximately 1.6 kcal/mol) in the gas phase. The radial distribution functions between DCE and the nearest water shows that the electrostatic repulsion between chlorine and oxygen atoms is higher in the trans conformer than in the gauche one, while the attractive interaction between chlorine and hydrogen of water is higher in the gauche conformer.
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Affiliation(s)
- Jin Yong Lee
- Department of Theoretical Molecular Science, Institute for Molecular Science, Okazaki 444-8585, Japan
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7
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Ishizuka R, Hirata F. Conformational equilibria in liquids consisting of small chain molecules. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2005.12.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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8
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McClain BL, Ben-Amotz D. Perturbed hard-body fluid analysis of the global effects of solvation on conformational thermodynamics. J Chem Phys 2002. [DOI: 10.1063/1.1505024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
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McClain BL, Ben-Amotz D. Global Quantitation of Solvent Effects on the Isomerization Thermodynamics of 1,2-Dichloroethane and trans-1,2-Dichlorocyclohexane. J Phys Chem B 2002. [DOI: 10.1021/jp0140973] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Brian L. McClain
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-1393
| | - Dor Ben-Amotz
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-1393
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Katō M, Taniguchi Y. Effect of pressure on the conformation of p‐terphenyl in carbon disulfide. J Chem Phys 1990. [DOI: 10.1063/1.458122] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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11
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Glass Cell Method for High-Pressure, High-Resolution NMR Measurements. Applications to the Studies of Pressure Effects on Molecular Conformation and Structure. ACTA ACUST UNITED AC 1990. [DOI: 10.1007/978-3-642-75926-0_6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
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12
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Enciso E, Alonso J, Almarza NG, Bermejo FJ. Statistical mechanics of small chain molecular liquids. II. Structure and thermodynamic properties of modeledn‐butane liquid. J Chem Phys 1989. [DOI: 10.1063/1.456491] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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13
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Katō M, Higashi M, Taniguchi Y. Effect of pressure on the internal rotation angle of biphenyl in carbon disulfide. J Chem Phys 1988. [DOI: 10.1063/1.455593] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Ikawa S, Whalley E. Polarized and depolarized Raman spectra of liquid carbon disulfide in the pressure range 0–10 kbar. I. Vibration frequencies, C–S bond length, and Fermi resonance. J Chem Phys 1986. [DOI: 10.1063/1.451061] [Citation(s) in RCA: 31] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Dare-Edwards MP, Gardiner DJ, Walker NA. Raman intensity measurements for determining conformer populations as a function of pressure. Nature 1985. [DOI: 10.1038/316614a0] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Ikawa S, Whalley E. Effect of pressure on molecular conformations. V. The internal rotation angle of 1,2‐dichloroethane by infrared spectroscopy. J Chem Phys 1984. [DOI: 10.1063/1.447876] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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17
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Taniguchi Y, Takaya H, Wong PTT, Whalley E. Effect of pressure on molecular conformations. II. Trans–gauche equilibrium of 1,2‐dichloroethane and 1,2‐dibromoethane. J Chem Phys 1981. [DOI: 10.1063/1.441908] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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