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Nehrkorn J, Telser J, Holldack K, Stoll S, Schnegg A. Simulating Frequency-Domain Electron Paramagnetic Resonance: Bridging the Gap between Experiment and Magnetic Parameters for High-Spin Transition-Metal Ion Complexes. J Phys Chem B 2015; 119:13816-24. [DOI: 10.1021/acs.jpcb.5b04156] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Joscha Nehrkorn
- Berlin Joint EPR Lab, Institute
for Nanospectroscopy, Helmholtz-Zentrum Berlin für Materialien und Energie, Kekuléstraße 5, 12489 Berlin, Germany
| | - Joshua Telser
- Department
of Biological, Chemical and Physical Sciences, Roosevelt University, 430 South Michigan Avenue, Chicago, Illinois 60605, United States
| | - Karsten Holldack
- Institute
for Methods and Instrumentation for Synchrotron Radiation Research, Helmholtz-Zentrum Berlin für Materialien und Energie, Albert-Einstein-Straße
15, 12489 Berlin, Germany
| | - Stefan Stoll
- Department
of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, United States
| | - Alexander Schnegg
- Berlin Joint EPR Lab, Institute
for Nanospectroscopy, Helmholtz-Zentrum Berlin für Materialien und Energie, Kekuléstraße 5, 12489 Berlin, Germany
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Cheng SC, Chang CW, Wei HH, Lee GH, Wang Y. Mononuclear Iron(III) and Manganese(III) Complexes with Substituted Salicylaldimine Ligands: Structure, Magnetic Properties, and Catalytic Activity of Olefins-Epoxidation. J CHIN CHEM SOC-TAIP 2013. [DOI: 10.1002/jccs.200300005] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Ali ME, Sanyal B, Oppeneer PM. Electronic structure, spin-states, and spin-crossover reaction of heme-related Fe-porphyrins: a theoretical perspective. J Phys Chem B 2012; 116:5849-59. [PMID: 22512398 DOI: 10.1021/jp3021563] [Citation(s) in RCA: 85] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The electronic structures, spin-states, and geometrical parameters of tetra-, penta-, and hexa-coordinated iron-porphyrins are investigated applying density functional theory (DFT) based calculations, utilizing the plane-wave pseudopotential as well as localized basis set approaches. The splitting of the spin multiplet energies are investigated applying various functionals including recently developed hybrid meta-GGA (M06 family) functionals. Almost all of the hybrid functionals accurately reproduce the experimental ground state spins of the investigated Fe-porphyrins. However, the energetic ordering of the spin-states and the energies between them are still an issue. The widely used B3LYP provides consistent results for all chosen systems. The GGA+U functionals are found to be equally competent. After assessing the performance of various functionals in spin-state calculations, the potential energy surfaces of the oxygen binding process by heme is investigated. This reveals a "double spin-crossover" feature for the lowest energy reaction path that is consistent with previous CASPT2 calculations but predicting a lowest energy singlet state. The calculations have hence captured the spin-crossover as well as spin-flip processes. These are driven by the intra-atomic orbital polarization on the central metal atom due to the atomic and orbitals rearrangements. The nature of the chemical bonding and a molecular orbital analysis are also performed for the geometrically simple but electronic structurally complicated system tetra-coordinated planar Fe porphyrin in comparison to the penta-coordinated systems. This analysis explains the observed paradoxical appearance of certain peaks in the local density of states (DOS).
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Affiliation(s)
- Md Ehesan Ali
- Centre for Theoretical Chemistry, Ruhr-Universität, D-44780 Bochum, Germany.
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Golenya IA, Gumienna-Kontecka E, Boyko AN, Haukka M, Fritsky IO. Encapsulation of a guest sodium cation by iron(iii) tris-(hydroxamate)s. Dalton Trans 2012; 41:9427-30. [PMID: 22743963 DOI: 10.1039/c2dt30669g] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Irina A Golenya
- Department of Chemistry, National Taras Shevchenko University, 01601 Kiev, Ukraine
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LIAO MENGSHENG, WATTS JOHND, HUANG MINGJU. ASSESSMENT OF SOME RECENTLY DEVELOPED DENSITY FUNCTIONALS FOR CALCULATIONS ON IRON PORPHYRINS. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s0219633608004003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The behaviors of several recently developed density functionals (M05, M05-2x, M06, M06-2x, M06-L, KT1, KT2) in describing the spin-state energetics of iron porphyrins [ FeP , FeP ( Cl ), FeP ( THF )2, FeTpivPP ] have been investigated, where KT1 and KT2 are pure GGA (generalized gradient approximation) functionals; M06-L is a meta-GGA functional that contains the kinetic-energy density τ[=∑(∇ϕi)2]; M05, M05-2x, M06, and M06-2x are hybrid meta-GGA functionals that include both the kinetic-energy density and Hartree–Fock exchange. The results reveal that KT1 and KT2 are biased toward lower-spin states and so fail to give the correct ground state for the high-spin systems, but KT2 shows a significant improvement over KT1. M05, M05-2x, M06, and M06-2x yield results which are in qualitative agreement with the experimental findings for FeP ( Cl ) and FeP ( THF )2, but their relative energies for the high-spin states are actually underestimated greatly. Among the various functionals tested here, only M06-L is able to provide a satisfactory description of the energetics of FeP , FeP ( Cl ), and FeP ( THF )2, for which the ground-state multiplicities are surely known. FeTpivPP is predicted to be high spin by the M06-L functional, in agreement with the early experimental magnetic measurement, but different from the previous results (and conclusion) obtained with other various functionals.
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Affiliation(s)
- MENG-SHENG LIAO
- Department of Chemistry, Jackson State University, P.O. Box 17910, Jackson, MS 39217, USA
| | - JOHN D. WATTS
- Department of Chemistry, Jackson State University, P.O. Box 17910, Jackson, MS 39217, USA
| | - MING-JU HUANG
- Department of Chemistry, Jackson State University, P.O. Box 17910, Jackson, MS 39217, USA
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Barabanschikov A, Demidov A, Kubo M, Champion PM, Sage JT, Zhao J, Sturhahn W, Alp EE. Spectroscopic identification of reactive porphyrin motions. J Chem Phys 2011; 135:015101. [PMID: 21744919 PMCID: PMC3144962 DOI: 10.1063/1.3598473] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2011] [Accepted: 05/18/2011] [Indexed: 11/14/2022] Open
Abstract
Nuclear resonance vibrational spectroscopy (NRVS) reveals the vibrational dynamics of a Mössbauer probe nucleus. Here, (57)Fe NRVS measurements yield the complete spectrum of Fe vibrations in halide complexes of iron porphyrins. Iron porphine serves as a useful symmetric model for the more complex spectrum of asymmetric heme molecules that contribute to numerous essential biological processes. Quantitative comparison with the vibrational density of states (VDOS) predicted for the Fe atom by density functional theory calculations unambiguously identifies the correct sextet ground state in each case. These experimentally authenticated calculations then provide detailed normal mode descriptions for each observed vibration. All Fe-ligand vibrations are clearly identified despite the high symmetry of the Fe environment. Low frequency molecular distortions and acoustic lattice modes also contribute to the experimental signal. Correlation matrices compare vibrations between different molecules and yield a detailed picture of how heme vibrations evolve in response to (a) halide binding and (b) asymmetric placement of porphyrin side chains. The side chains strongly influence the energetics of heme doming motions that control Fe reactivity, which are easily observed in the experimental signal.
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Affiliation(s)
- Alexander Barabanschikov
- Department of Physics and Center for Interdisciplinary Research on Complex Systems, Northeastern University, Boston, Massachusetts 02115, USA
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Panchmatia PM, Ali ME, Sanyal B, Oppeneer PM. Halide Ligated Iron Porphines: A DFT+U and UB3LYP Study. J Phys Chem A 2010; 114:13381-7. [DOI: 10.1021/jp106358m] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pooja M. Panchmatia
- Department of Physics and Astronomy, Uppsala University, Box 516, S-751 20 Uppsala, Sweden, Department of Chemistry, University of Bath, Bath, BA2 7AY, U.K., and Theoretische Chemie, Ruhr-Universität, Bochum, D-44780, Bochum, Germany
| | - Md. Ehesan Ali
- Department of Physics and Astronomy, Uppsala University, Box 516, S-751 20 Uppsala, Sweden, Department of Chemistry, University of Bath, Bath, BA2 7AY, U.K., and Theoretische Chemie, Ruhr-Universität, Bochum, D-44780, Bochum, Germany
| | - Biplab Sanyal
- Department of Physics and Astronomy, Uppsala University, Box 516, S-751 20 Uppsala, Sweden, Department of Chemistry, University of Bath, Bath, BA2 7AY, U.K., and Theoretische Chemie, Ruhr-Universität, Bochum, D-44780, Bochum, Germany
| | - Peter M. Oppeneer
- Department of Physics and Astronomy, Uppsala University, Box 516, S-751 20 Uppsala, Sweden, Department of Chemistry, University of Bath, Bath, BA2 7AY, U.K., and Theoretische Chemie, Ruhr-Universität, Bochum, D-44780, Bochum, Germany
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Li M, Neal TJ, Ehlinger N, Schulz CE, Scheidt WR. Inter-Ring Interactions in [Fe(TalkylP)(Cl)] (alkyl = ethyl, n-propyl, n-hexyl) Complexes: Control by meso-Substituted Groups. J PORPHYR PHTHALOCYA 2010; 14:115-122. [PMID: 20526455 PMCID: PMC2879655 DOI: 10.1142/s1088424610001714] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Syntheses, molecular structures and magnetic susceptibilities of three meso-substituted high-spin iron(III) porphyrinate complexes ([Fe(TEtP)(Cl)], [Fe(TPrP)(Cl)], and [Fe(THexP)(Cl)]) are described. It was determined that the inter-ring interactions within each dimeric unit change upon alteration of the alkyl groups at the meso-positions. Magnetic exchange couplings between iron centers of the dimers are in accord with the trends in structural inter-ring geometries. Crystal data for [Fe(TEtP)(Cl)]: a = 10.1710(5) Å, b = 11.309(3) Å, c = 12.170(3) Å, α = 91.774(9) °, β = 113.170(14) °, γ = 112.149(9) °, V = 1165.2(4) Å(3), triclinic, P1̄, Z = 2, R(1) = 0.0844 and ωR(2) = 0.2073 for observed data. Crystal data for [Fe([Fe(TPrP)(Cl)])(Cl)]: a = 13.040(2) Å, b = 15.221(2) Å, c = 14.6681(9) Å, β = 109.997(11) °, V = 2735.9(7) Å(3), monoclinic, P2(1)/n, Z = 4, R(1) = 0.0477 and ωR(2) = 0.1176 for observed data. Crystal data for [Fe(THexP)(Cl)]: a = 10.246(7) Å, b = 12.834(4) Å, c = 17.420(15) Å, α = 69.74(3) °, β = 87.52(4) °, γ, = 84.89(3) °, V = 2140(2) Å(3), triclinic, P1̄, Z = 2, R(1) = 0.1024 and ωR(2) = 0.2659 for observed data.
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Affiliation(s)
- Ming Li
- The Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556
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Tajima H, Shimatani K, Komino T, Matsuda M, Ikeda S, Ando Y, Akiyama H. A Voltage-Induced Transition of Hemin in BIODE (Biomolecular Light-Emitting Diode). BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2006. [DOI: 10.1246/bcsj.79.549] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Liao MS, Watts JD, Huang MJ. Assessment of the performance of density-functional methods for calculations on iron porphyrins and related compounds. J Comput Chem 2006; 27:1577-92. [PMID: 16868988 DOI: 10.1002/jcc.20458] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The behaviors of a large number of GGA, meta-GGA, and hybrid-GGA density functionals in describing the spin-state energetics of iron porphyrins and related compounds have been investigated. There is a large variation in performance between the various functionals for the calculations of the high-spin state relative energies. Most GGA and meta-GGA functionals are biased toward lower-spin states and so fail to give the correct ground state for the high-spin systems, for which the meta-GGA functionals show more or less improvement over the GGA ones. The GGA functionals that use the OPTX correction for exchange show remarkably high performance for calculating the high-spin state energetics, but their results for the intermediate-spin states are somewhat questionable. A heavily parameterized GGA functional, HCTH/407, provides results which are in qualitative agreement with the experimental findings for the iron porphyrins [FeP, FeP(Cl), FeP(THF)2], but its relative energies for the high-spin states are probably somewhat too low. The high-spin state relative energies are then even more underestimated by the corresponding meta-GGA functional tau-HCTH. For the hybrid-GGA functionals, the Hartree-Fock (HF)-type (or exact) exchange contribution strongly stabilizes the high-spin states, and so the performance of such functionals is largely dependent upon the amount of the HF exchange admixture in them. The B3LYP, B97, B97-1, and tau-HCTH-hyb functionals are able to provide a satisfactory description of the energetics of all the systems considered.
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Affiliation(s)
- Meng-Sheng Liao
- Department of Chemistry, P O Box 17910, Jackson State University, Jackson, Mississippi 39217, USA
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Liao MS, Scheiner S. Comparative study of metal-porphyrins, -porphyrazines, and -phthalocyanines. J Comput Chem 2002; 23:1391-403. [PMID: 12370942 DOI: 10.1002/jcc.10142] [Citation(s) in RCA: 104] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A theoretical comparative study of complexes of porphyrin (P), porphyrazine (Pz), and phthalocyanine (Pc) with metal (M) = Fe, Co, Ni, Cu, and Zn has been carried out using a DFT method. The calculations provide a clear elucidation of the ground states for the MP/Pz/Pc molecules and for a series of [MP/Pz/Pc](x-) and [MP/Pz/Pc](y+) ions (x = 1, 2, 3, 4; y = 1, 2). There are significant differences among MP, MPz, and MPc in the electronic structure and other calculated properties. For FeP/Pz and CoP/Pz, the first oxidation occurs at the central metal, while it is the macroring of FePc and CoPc that is the site of oxidation. The smaller coordination cavity results in a stronger ligand field in Pz than in P. However, the benzo annulation produces a surprisingly strong destabilizing effect on the metal-macrocycle bonding. The effects of Cl axial bonding upon the electronic structures of the iron(III) complexes of P, Pz, and Pc were examined, as was the bonding of pyridine (py) to NiP, NiPz, and NiPc. The porphinato core size plays a crucial role in controlling the spin state of Fe(III) in these complexes. FePc(Cl) is predicted to be a pure intermediate-spin system, whereas NiPz(py)(2) and NiPc(py)(2) are metastable in high-spin (S = 1) states. The NiPz/Pc-(py)(2) binding energy curve has only a shallow well that facilitates decomposition of the complex. The NiP-(py)(2) bond energy is small, but the relatively deep well in the binding energy curve ought to make this system stable to decomposition.
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Affiliation(s)
- Meng-Sheng Liao
- Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, USA
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A linear polymer manganese(III) complex; synthesis, crystal and molecular structure and magnetic properties of catena-μ-acetato-[N,N′-O-phenylenebis(salicylideneaminato)]manganese(III). Inorganica Chim Acta 2001. [DOI: 10.1016/s0020-1693(01)00417-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Structure and magnetic properties of dinuclear [Mn(III)(salen)(H2O)]2(ClO4)2 and polynuclear [Mn(III)(salen)(NO3)]n. Inorganica Chim Acta 1999. [DOI: 10.1016/s0020-1693(99)00089-4] [Citation(s) in RCA: 83] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Ghosh K, Ramakrishnan S, Chinchure AD, Jonason K, Marathe VR, Chandra G, Shah SS. Heat-capacity studies in the Y5-xDyxOs4Ge10 system. PHYSICAL REVIEW. B, CONDENSED MATTER 1995; 51:11656-11663. [PMID: 9977901 DOI: 10.1103/physrevb.51.11656] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Ramakrishnan S, Ghosh K, Chinchure AD, Jonason K, Marathe VR, Chandra G. Superconductivity and magnetism in the Sc5-xDyxIr4Si10 system. PHYSICAL REVIEW. B, CONDENSED MATTER 1995; 51:8398-8403. [PMID: 9977451 DOI: 10.1103/physrevb.51.8398] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Sundaresan A, Chinchure AD, Ghosh K, Ramakrishnan S, Marathe VR, Gupta LC, Sharon M, Shah SS. Superconducting and magnetic properties of TlSr2Ca1-xRxCu2O7. PHYSICAL REVIEW. B, CONDENSED MATTER 1995; 51:3893-3898. [PMID: 9979209 DOI: 10.1103/physrevb.51.3893] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Chinchure AD, Mazumdar C, Marathe VR, Nagarajan R, Gupta LC, Shah SS. Valence states of Sm in SmRuSn3. PHYSICAL REVIEW. B, CONDENSED MATTER 1994; 50:609-611. [PMID: 9974591 DOI: 10.1103/physrevb.50.609] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Snyder B, Reynolds M, Holm R, Papaefthymiou G, Frankel R. Electronic properties of monocapped prismane and basket iron-sulphur clusters. Polyhedron 1991. [DOI: 10.1016/s0277-5387(00)81590-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Gupta GP, Lang G, Scheidt WR, Geiger DK, Reed CA. Mössbauer and susceptibility study of inter‐heme spin coupling in [Fe (OEP) (2‐MeHIm)]+dimers. J Chem Phys 1985. [DOI: 10.1063/1.449626] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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