1
|
Koyama A, Nicholson DA, Andreev M, Rutledge GC, Fukao K, Yamamoto T. Spectroscopic analysis in molecular simulations with discretized Wiener-Khinchin theorem for Fourier-Laplace transformation. Phys Rev E 2021; 102:063302. [PMID: 33465994 DOI: 10.1103/physreve.102.063302] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Accepted: 10/07/2020] [Indexed: 11/07/2022]
Abstract
The Wiener-Khinchin theorem for the Fourier-Laplace transformation (WKT-FLT) provides a robust method to obtain the single-side Fourier transforms of arbitrary time-domain relaxation functions (or autocorrelation functions). Moreover, by combining an on-the-fly algorithm with the WKT-FLT, the numerical calculations of various complex spectroscopic data in a wide frequency range become significantly more efficient. However, the discretized WKT-FLT equation, obtained simply by replacing the integrations with the discrete summations, always produces two artifacts in the frequency-domain relaxation function. In addition, the artifacts become more apparent in the frequency-domain response function converted from the relaxation function. We find the sources of these artifacts that are associated with the discretization of the WKT-FLT equation. Taking these sources into account, we derive discretized WKT-FLT equations designated for both the frequency-domain relaxation and response functions with the artifacts removed. The use of the discretized WKT-FLT equations with the on-the-fly algorithm is illustrated by a flow chart. We also give application examples for the wave-vector-dependent dynamic susceptibility in an isotropic amorphous polyethylene and the frequency-domain response functions of the orientation vectors in an n-alkane crystal.
Collapse
Affiliation(s)
- Akira Koyama
- Department of General Education, National Institute of Technology, Toyota College, 2-1 Eisei-cho, Toyota, Aichi 471-8525, Japan
| | - David A Nicholson
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
| | - Marat Andreev
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
| | - Gregory C Rutledge
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
| | - Koji Fukao
- Department of Physical Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan
| | - Takashi Yamamoto
- Department of Physics and Informatics, Yamaguchi University, Yamaguchi 753-8512, Japan
| |
Collapse
|
2
|
Bartoš J, Zgardzinska B, Švajdlenková H, Lukešová M, Zaleski R. ESR and PALS detection of the dynamic crossover in the supercooled liquid states of short and medium-sized n-alkanes. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.04.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
3
|
|
4
|
X-ray study of molecular motions in the rotator phases of normal tricosane. Polym J 2015. [DOI: 10.1038/pj.2015.115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
5
|
Reuter J, Würflinger A. Differential Thermal Analysis of Long-Chainn-Alcohols under High Pressure. ACTA ACUST UNITED AC 2014. [DOI: 10.1002/bbpc.199500067] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
6
|
Wickramarachchi PASR, Spells SJ, de Silva DSM. Study of disorder in different phases of tetratriacontane and a binary alkane mixture, using vibrational spectroscopy. J Phys Chem B 2007; 111:1604-9. [PMID: 17256892 DOI: 10.1021/jp066207h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Raman spectroscopy has been used to investigate the monoclinic crystal --> rotator --> melt phase transitions in n-C(34)H(70), for both real-time heating and cooling runs. Changes in band intensity and frequency in the CH2 bending, CH2 twisting, skeletal C-C stretching, and CH3 rocking regions revealed both transitions, particularly when using band components related to gauche bonds. In the room temperature infrared spectrum, the CH2 rocking-twisting and CH2 wagging progressions were observed and indexed for n-C(34)H(70) and a 2:1 (w/w) mixture of C(34)H(70) and C(36)D(74). This led to best estimates for the all-trans crystal core in both cases of 33 to 34 carbon atoms, indicating that the core corresponds to almost the whole of the C(34)H(70) molecule.
Collapse
|
7
|
Dirand M, Achour Z, Jouti B, Sabour A, Gachon JC. Binary Mixtures of n-Alkanes. Phase Diagram Generalization: Intermediate Solid Solutions, Rotator Phases. ACTA ACUST UNITED AC 2006. [DOI: 10.1080/10587259608034082] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- M. Dirand
- a Ecole Nationale Supérieure des Industries Chimiques, Laboratoire de Thermodynamique Chimique et Appliquée 1 , rue Grandville-BP 451, F 54001 , Nancy Cédex
| | - Z. Achour
- a Ecole Nationale Supérieure des Industries Chimiques, Laboratoire de Thermodynamique Chimique et Appliquée 1 , rue Grandville-BP 451, F 54001 , Nancy Cédex
| | - B. Jouti
- a Ecole Nationale Supérieure des Industries Chimiques, Laboratoire de Thermodynamique Chimique et Appliquée 1 , rue Grandville-BP 451, F 54001 , Nancy Cédex
| | - A. Sabour
- a Ecole Nationale Supérieure des Industries Chimiques, Laboratoire de Thermodynamique Chimique et Appliquée 1 , rue Grandville-BP 451, F 54001 , Nancy Cédex
| | - J.-C. Gachon
- b Laboratoire de Chimie du Solide Minéral, U.R.A.-C.N.R.S. n° 158, Service Themodynamique Métallurgique, Domaine Scientifique Victor Grignard, Université Henri Poincaré , Nancy I, BP, 239-F54506 , Vandoeuvre Les Nancy Cédex
| |
Collapse
|
8
|
Nouar H, Petitjean D, Bouroukba M, Dirand M. Isothermal Sections of Ternary Mixtures: n-docosane + n-tricosane + n-tetracosane. ACTA ACUST UNITED AC 2006. [DOI: 10.1080/10587259908025427] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- H. Nouar
- a Laboratoire de Thermodynamique des Séparations, Ecole Nationale Supérieure des Industries Chimiques , Institut National Polytechnique de Lorraine , 1, rue Grandville BP 451, F54001 , NANCY , Cedex , France
| | - D. Petitjean
- a Laboratoire de Thermodynamique des Séparations, Ecole Nationale Supérieure des Industries Chimiques , Institut National Polytechnique de Lorraine , 1, rue Grandville BP 451, F54001 , NANCY , Cedex , France
| | - M. Bouroukba
- a Laboratoire de Thermodynamique des Séparations, Ecole Nationale Supérieure des Industries Chimiques , Institut National Polytechnique de Lorraine , 1, rue Grandville BP 451, F54001 , NANCY , Cedex , France
| | - M. Dirand
- a Laboratoire de Thermodynamique des Séparations, Ecole Nationale Supérieure des Industries Chimiques , Institut National Polytechnique de Lorraine , 1, rue Grandville BP 451, F54001 , NANCY , Cedex , France
| |
Collapse
|
9
|
Mavrantza IE, Prentzas D, Mavrantzas VG, Galiotis C. Detailed atomistic molecular-dynamics simulation of the orthorhombic phase of crystalline polyethylene and alkane crystals. J Chem Phys 2001. [DOI: 10.1063/1.1386912] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
10
|
Fujiwara S, Sato T. Structure formation of a single polymer chain. I. Growth of trans domains. J Chem Phys 2001. [DOI: 10.1063/1.1356440] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
11
|
Chevallier V, Petitjean D, Bouroukba M, Dirand M. Mixtures of numerous different n-alkanes: 2. Studies by X-ray diffraction and differential thermal analyses with increasing temperature. POLYMER 1999. [DOI: 10.1016/s0032-3861(98)00409-1] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
12
|
Induced structural changes at aliphatic hydrocarbon–graphite interfaces. Colloids Surf A Physicochem Eng Asp 1998. [DOI: 10.1016/s0927-7757(98)00205-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
13
|
Arteca GA. Dynamic Molecular Shape Analysis of Configurational Transitions Associated with Melting and Premelting of n-Alkane Chains. J Phys Chem B 1997. [DOI: 10.1021/jp9621538] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Gustavo A. Arteca
- Département de Chimie et Biochimie, Laurentian University, Ramsey Lake Road, Sudbury, Ontario, Canada P3E 2C6
| |
Collapse
|
14
|
Jouti B, Provost E, Petitjean D, Bouroukba M, Dirand M. Phase diagram of n-heneicosane and n-tricosane molecular alloys. J Mol Struct 1996. [DOI: 10.1016/0022-2860(96)09245-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
15
|
|
16
|
Achour-Boudjema Z, Bourdet J, Petitjean D, Dirand M. Structural behaviour of n-tetracosane and n-hexacosane mixtures. J Mol Struct 1995. [DOI: 10.1016/0022-2860(95)08889-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
17
|
Liang G, Noid D, Sumpter B, Wunderlich B. Structure and mass transport in constrained polymer crystals via molecular dynamics simulations. POLYMER 1995. [DOI: 10.1016/0032-3861(95)90682-r] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
18
|
Karaborni S. Order-disorder transition during approach and separation of two parallel surfaces. PHYSICAL REVIEW LETTERS 1994; 73:1668-1671. [PMID: 10056853 DOI: 10.1103/physrevlett.73.1668] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
|
19
|
|
20
|
|
21
|
Royaud I, Hendra P, Maddams W, Passingham C, Willis H. Structural changes in even-numbered crystalline paraffins at temperatures below their melting point. J Mol Struct 1990. [DOI: 10.1016/0022-2860(90)80204-w] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
22
|
Yamamoto T, Nozaki K, Hara T. X‐ray and thermal studies on the rotator phases of normal higher alcohols C17H35OH, C18H37OH, and their mixtures. J Chem Phys 1990. [DOI: 10.1063/1.458414] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
23
|
|
24
|
Guillaume F, Doucet J, Sourisseau C, Dianoux AJ. Molecular motions inn‐nonadecane C19H40: An incoherent neutron scattering study. J Chem Phys 1989. [DOI: 10.1063/1.457015] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
25
|
Ryckaert JP, McDonald IR, Klein ML. Disorder in the pseudohexagonal rotator phase ofn-alkanes: molecular-dynamics calculations for tricosane. Mol Phys 1989. [DOI: 10.1080/00268978900101561] [Citation(s) in RCA: 96] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
|
26
|
Yamamoto T. Monte Carlo simulation of the crystal structure of the rotator phase of n‐paraffins. II. Effects of rotation and translation of the rigid molecules. J Chem Phys 1988. [DOI: 10.1063/1.455079] [Citation(s) in RCA: 54] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
27
|
Ryckaert JP, Klein ML, McDonald IR. Disorder at the bilayer interface in the pseudohexagonal rotator phase of solid n-alkanes. PHYSICAL REVIEW LETTERS 1987; 58:698-701. [PMID: 10035012 DOI: 10.1103/physrevlett.58.698] [Citation(s) in RCA: 56] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
|
28
|
Ryckaert J, Klein ML. Translational and rotational disorder in solid n‐alkanes: Constant temperature–constant pressure molecular dynamics calculations using infinitely long flexible chains. J Chem Phys 1986. [DOI: 10.1063/1.451203] [Citation(s) in RCA: 84] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
29
|
Craievich A, Doucet J, Denicoló I. Molecular disorder in even-numbered paraffins. PHYSICAL REVIEW. B, CONDENSED MATTER 1985; 32:4164-4168. [PMID: 9937573 DOI: 10.1103/physrevb.32.4164] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/11/2023]
|