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Wang R, Sun Z, Alexander MH. Development of the Time-Independent Methods for the Cl + H 2/F + HD Reaction Using Hyper-Spherical Coordinates Including (Full) Spin-Orbit Characteristics. J Chem Theory Comput 2024; 20:3449-3461. [PMID: 38691764 DOI: 10.1021/acs.jctc.4c00161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2024]
Abstract
Recently, a combined study of high-resolution molecular crossed beam experiment and accurate full-dimensional time-dependent theory, including full spin-orbit characteristics on the effect of electronic spin and orbital angular momenta in the F + HD reaction, was reported by some of us, focusing on the partial wave resonance phenomenon (Science 2021, 371, 936-940). It revealed that the time-dependent theory could explain all of the details observed in the high-resolution experiment. Here, we develop two time-independent close-coupling methods using hyperspherical coordinates, including the two-state model, where only a part of the spin-orbit characteristics is considered, and the six-state model, where the full spin-orbit characteristics is considered. With these two newly developed theoretical models and the adiabatic theoretical model, the detailed reaction dynamics of the F + HD (v = 0, j = 0) reaction and the Cl + H2 (v = 0, j = 0) reaction are investigated and compared. Some of the results are compared with the time-dependent quantum wave packet theory and the experimental observations, and good agreements have been obtained, which suggests the validity of the pure-procession approximation in the six-state model using different theoretical methods. This work demonstrates the ability of the reactive scattering theory including full spin-orbit characteristics for describing the reactions of a halogen atom plus hydrogen molecule and its isotopologues.
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Affiliation(s)
- Ransheng Wang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Millard H Alexander
- Department of Chemistry and Biochemistry and Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742, United States
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2
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Wang R, Shi H, Xie T, Sun Z. Significant Isotope Effects from the Nonadiabatic Couplings in the Cl( 2P) + HD( v = 0, j = 0) Reaction. J Phys Chem A 2024; 128:3301-3310. [PMID: 38648526 DOI: 10.1021/acs.jpca.4c00830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
The impact of non-Born-Oppenheimer couplings on the isotopic effects in the reaction of the Cl(2P) atom with the HD (v = 0, j = 0) molecule is investigated with our recently developed nonadiabatic time-independent quantum scattering methods, where the full open-shell characteristics are included in the six-state model, and also with the recently developed two-state model solving by time-independent methods, where part of the open-shell characteristic is included. The same reaction is also calculated with the simple adiabatic model using the lowest adiabatic potential energy surface. Compared with the results from different models, it is found that the reactivity of the Cl + HD → HCl + D channel is significantly overestimated in the adiabatic model. In contrast, the reactivity of the other channel agrees well with the nonadiabatic models. This is due to the van der Waals well in the reactant channel being changed a lot by including the nonadiabatic couplings. These quantum dynamics calculations suggest that sometimes the adiabatic model should be used with caution; otherwise, it may result in significant deviations for some reactions.
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Affiliation(s)
- Ransheng Wang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Haimei Shi
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ting Xie
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
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3
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Xie Y, Wang Y, Wang W, Dai D, Sun Z, Xiao C, Yang X. Experimental and Theoretical Study of the Vibrationally Excited Reaction Cl + D 2 ( v = 1, j = 0) → DCl + D. J Phys Chem A 2020; 124:1266-1271. [PMID: 31985219 DOI: 10.1021/acs.jpca.9b10981] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Vibrationally excited reaction of Cl + D2 (v = 1, j = 0) → DCl + D was investigated by a high-resolution crossed beam experiment, with D2 molecules in the vibrationally excited state prepared by the scheme of stimulated Raman pumping. Differential cross sections (DCSs) were obtained at three collision energies of 4.03, 4.93, and 5.68 kcal/mol. Backward scattering is dominant for both DCl (v' = 0) and DCl (v' = 1) products, and no forward scattering signal was observed at these three collision energies. Collision-energy-dependent DCS in the backward scattering direction was measured at collision energies between 3.62 and 5.97 kcal/mol. Comparing with the DCSs from the vibrational ground state, it is found that the vibrational excitation of D2 molecules significantly enhances the reactivity because of the later barrier nature of the reaction. No obvious oscillatory structure was found in the collision-energy-dependent DCS in the backward scattering direction, suggesting that the title reaction proceeds via a direct abstraction mechanism.
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Affiliation(s)
- Yurun Xie
- Shanghai Advanced Research Institute , Chinese Academy of Sciences , Shanghai 201210 , China.,State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian , Liaoning 116023 , China.,University of Chinese Academy of Sciences , Beijing 100049 , China
| | - Yufeng Wang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian , Liaoning 116023 , China.,University of Chinese Academy of Sciences , Beijing 100049 , China
| | - Wei Wang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian , Liaoning 116023 , China.,University of Chinese Academy of Sciences , Beijing 100049 , China
| | - Dongxu Dai
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian , Liaoning 116023 , China
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian , Liaoning 116023 , China
| | - Chunlei Xiao
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian , Liaoning 116023 , China
| | - Xueming Yang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian , Liaoning 116023 , China.,College of Science , Southern University of Science and Technology , Shenzhen , Guangdong 518055 , China
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4
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Xing L, Bao JL, Wang Z, Zhang F, Truhlar DG. Degradation of Carbonyl Hydroperoxides in the Atmosphere and in Combustion. J Am Chem Soc 2017; 139:15821-15835. [PMID: 29022349 DOI: 10.1021/jacs.7b08297] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Oxygenates with carbonyl and hydroperoxy functional groups are important intermediates that are generated during the autoxidation of organic compounds in the atmosphere and during the autoignition of transport fuels. In the troposphere, the degradation of carbonyl hydroperoxides leads to low-vapor-pressure polyfunctional species that may precipitate in clouds and fog droplets or to the formation of secondary organic aerosols (SOAs). In combustion, the fate of carbonyl hydroperoxides is important for the performance of advanced combustion engines, especially for autoignition. A key fate of the carbonyl hydroperoxides is reaction with OH radicals, for which kinetics data are experimentally unavailable. Here, we study 4-hydroperoxy-2-pentanone (CH3C(═O)CH2CH(OOH)CH3) as a model compound to clarify the kinetics of OH reactions with carbonyl hydroperoxides, in particular H atom abstraction and OH addition reactions. With a combination of electronic structure calculations, we determine previously missing thermochemical data, and with multipath variational transition state theory (MP-VTST), a multidimensional tunneling (MT) approximation, multiple-structure anharmonicity, and torsional potential anharmonicity, we obtained much more accurate rate constants than the ones that can computed by conventional single-structure harmonic transition state theory (TST) and than the empirically estimated rate constants that are currently used in atmospheric and combustion modeling. The roles of various factors in determining the rates are elucidated. The pressure-dependent rate constants for the addition reaction are computed using system-specific quantum RRK theory. The calculated temperature range is 298-2400 K, and the pressure range is 0.01-100 atm. The accurate thermodynamic and kinetics data determined in this work are indispensable in the global modeling of SOAs in atmospheric science and in the detailed understanding and prediction of ignition properties of hydrocarbons and alternative fuels.
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Affiliation(s)
- Lili Xing
- National Synchrotron Radiation Laboratory, University of Science and Technology of China , Hefei, Anhui 230029, China.,Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota , Minnesota 55455-0431, United States
| | - Junwei Lucas Bao
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota , Minnesota 55455-0431, United States
| | - Zhandong Wang
- King Abdullah University of Science and Technology (KAUST) , Clean Combustion Research Center (CCRC), Thuwal, 23955-6900, Saudi Arabia
| | - Feng Zhang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China , Hefei, Anhui 230029, China
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota , Minnesota 55455-0431, United States
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Bao JL, Truhlar DG. Variational transition state theory: theoretical framework and recent developments. Chem Soc Rev 2017; 46:7548-7596. [DOI: 10.1039/c7cs00602k] [Citation(s) in RCA: 207] [Impact Index Per Article: 29.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
This article reviews the fundamentals of variational transition state theory (VTST), its recent theoretical development, and some modern applications.
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Affiliation(s)
- Junwei Lucas Bao
- Department of Chemistry
- Chemical Theory Center, and Minnesota Supercomputing Institute
- University of Minnesota
- Minneapolis
- USA
| | - Donald G. Truhlar
- Department of Chemistry
- Chemical Theory Center, and Minnesota Supercomputing Institute
- University of Minnesota
- Minneapolis
- USA
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Dashtaki SLH, Ramazani S. Variational transition state theory with multidimensional tunnelling and kinetic isotope effects in the reactions of C2H6, C2H5D and C2D6 with .CCl3 to produce CHCl3 and CDCl3. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1190875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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7
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Song H, Lee SY, Sun Z, Lu Y. Time-dependent wave packet state-to-state dynamics of H/D + HCl/DCl reactions. J Chem Phys 2013; 138:054305. [DOI: 10.1063/1.4790116] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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8
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Zheng J, Rocha RJ, Pelegrini M, Ferrão LFA, Carvalho EFV, Roberto-Neto O, Machado FBC, Truhlar DG. A product branching ratio controlled by vibrational adiabaticity and variational effects: Kinetics of the H + trans-N2H2 reactions. J Chem Phys 2012; 136:184310. [DOI: 10.1063/1.4707734] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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9
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Fleming DG, Arseneau DJ, Sukhorukov O, Brewer JH, Mielke SL, Truhlar DG, Schatz GC, Garrett BC, Peterson KA. Kinetics of the reaction of the heaviest hydrogen atom with H2, the4Heμ + H2→4HeμH + H reaction: Experiments, accurate quantal calculations, and variational transition state theory, including kinetic isotope effects for a factor of 36.1 in isotopic mass. J Chem Phys 2011; 135:184310. [DOI: 10.1063/1.3657440] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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10
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Cao J, Zhang Z, Zhang C, Bian W, Guo Y. Kinetic study on the H+SiH4 abstraction reaction using an ab initio potential energy surface. J Chem Phys 2011; 134:024315. [DOI: 10.1063/1.3521477] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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11
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Ju GZ, Bian WS. The TST-CEQ calculations on the light-heavy-light H+ClH reaction. CHINESE J CHEM 2010. [DOI: 10.1002/cjoc.19930110203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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12
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Matsugi A, Suma K, Miyoshi A. Rate Constants and Kinetic Isotope Effects on the Reaction of C2(X1Σg+) with CH4 and CD4. J Phys Chem A 2010; 114:4580-5. [DOI: 10.1021/jp1012494] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Akira Matsugi
- Department of Chemical System Engineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Kohsuke Suma
- Department of Chemical System Engineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Akira Miyoshi
- Department of Chemical System Engineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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13
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14
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Ghosal S, Mahapatra S. A time-dependent wave packet study of the vibronic and spin-orbit interactions in the dynamics of Cl(2P)+H2→HCl(X̃ 1Σg+)+H(2S) reaction. J Chem Phys 2004; 121:5740-53. [PMID: 15366998 DOI: 10.1063/1.1784781] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
We investigate the vibronic and spin-orbit (SO) coupling effects in the state-selected dynamics of the title reaction with the aid of a time-dependent wave packet approach. The ab initio potential energy surfaces of Capecchi and Werner [Science 296, 715 (2002)] have been employed for this purpose. Collinear approach of the Cl((2)P) atom to the H(2) molecule splits the degeneracy of the (2)P state and gives rise to (2)Sigma and (2)Pi electronic states. These two surfaces form a conical intersection at this geometry. These states transform as 1 (2)A('), 1 (2)A("), and 2 (2)A('), respectively, at the nonlinear configurations of the nuclei. In addition, the SO interaction due to Cl atom further splits these states into (2)Sigma(1/2), (2)Pi(3/2), and (2)Pi(1/2) components at the linear geometry. The ground-state reagent Cl((2)P(3/2))+H(2) correlates with (2)Sigma(1/2) and (2)Pi(3/2), where as the SO excited reagent Cl(*)((2)P(1/2))+H(2) correlates with (2)Pi(1/2) at the linear geometry. In order to elucidate the impact of the vibronic and SO coupling effects on the initial state-selected reactivity of these electronic states we carry out quantum scattering calculations based on a flux operator formalism and a time-dependent wave packet approach. In this work, total reaction probabilities and the time dependence of electronic population of the system by initiating the reaction on each of the above electronic states are presented. The role of conical intersection alone on the reaction dynamics is investigated with a coupled two-state model and for the total angular momentum J=0 (neglecting the electronic orbital angular momentum) both in a diabatic as well as in the adiabatic electronic representation. The SO interaction is then included and the dynamics is studied with a coupled three-state model comprising six diabatic surfaces for the total angular momentum J=0.5 neglecting the Coriolis Coupling terms of the Hamiltonian. Companion calculations are carried out for the uncoupled adiabatic and diabatic surfaces in order to explicitly reveal the impact of two different surface coupling mechanisms in the dynamics of this prototypical reaction.
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Affiliation(s)
- Subhas Ghosal
- School of Chemistry, University of Hyderabad, Hyderabad 500 046, India
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15
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Chen MD, Han KL, Lou NQ. Theoretical study of stereodynamics for the reactions Cl+H2/HD/D2. J Chem Phys 2003. [DOI: 10.1063/1.1545112] [Citation(s) in RCA: 185] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16
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Shen C, Wu T, Ju G, Bian W. Reaction Cross Sections and Rate Constants for the Cl + H2 Reaction from Quasiclassical Trajectory Calculation on Two New ab Initio Potential Energy Surfaces. J Phys Chem A 2001. [DOI: 10.1021/jp012421o] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Changsheng Shen
- State Key Laboratory of Coordination Chemistry, Mesoscopical Solid State Chemistry Institute, Department of Chemistry, Nanjing University, Nanjing 210093, P. R. China, State Key Laboratory of Crystal Material, Shandong University, Jinan 250100, P. R. China, and Institute of Theoretical Chemistry, Shandong University, Jinan 250100, P.R. China
| | - Tao Wu
- State Key Laboratory of Coordination Chemistry, Mesoscopical Solid State Chemistry Institute, Department of Chemistry, Nanjing University, Nanjing 210093, P. R. China, State Key Laboratory of Crystal Material, Shandong University, Jinan 250100, P. R. China, and Institute of Theoretical Chemistry, Shandong University, Jinan 250100, P.R. China
| | - Guanzhi Ju
- State Key Laboratory of Coordination Chemistry, Mesoscopical Solid State Chemistry Institute, Department of Chemistry, Nanjing University, Nanjing 210093, P. R. China, State Key Laboratory of Crystal Material, Shandong University, Jinan 250100, P. R. China, and Institute of Theoretical Chemistry, Shandong University, Jinan 250100, P.R. China
| | - Wensheng Bian
- State Key Laboratory of Coordination Chemistry, Mesoscopical Solid State Chemistry Institute, Department of Chemistry, Nanjing University, Nanjing 210093, P. R. China, State Key Laboratory of Crystal Material, Shandong University, Jinan 250100, P. R. China, and Institute of Theoretical Chemistry, Shandong University, Jinan 250100, P.R. China
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17
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Shen C, Wu T, Ju G, Bian W. Cl+HD reaction dynamics from quasiclassical trajectory calculation on a new ab initio potential energy surface. Chem Phys 2001. [DOI: 10.1016/s0301-0104(01)00445-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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18
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Taatjes CA, Klippenstein SJ. Kinetic Isotope Effects and Variable Reaction Coordinates in Barrierless Recombination Reactions. J Phys Chem A 2001. [DOI: 10.1021/jp011632q] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Craig A. Taatjes
- Combustion Research Facility, Mail Stop 9055, Sandia National Laboratories, Livermore, California 94551-0969
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19
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Aoiz FJ, Bañares L, Castillo JF, Menéndez M, Skouteris D, Werner HJ. A quantum mechanical and quasi-classical trajectory study of the Cl+H2 reaction and its isotopic variants: Dependence of the integral cross section on the collision energy and reagent rotation. J Chem Phys 2001. [DOI: 10.1063/1.1385155] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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Quasi-classical trajectory study of the DCl/HCl product branching ratios for the Cl+HD reaction on BW2 potential energy surface. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)00219-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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21
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Yang BH, Gao HT, Han KL, Zhang JZH. Time-dependent quantum dynamics study of the Cl+H2 reaction. J Chem Phys 2000. [DOI: 10.1063/1.481933] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Bian W, Werner HJ. Global ab initio potential energy surfaces for the ClH2 reactive system. J Chem Phys 2000. [DOI: 10.1063/1.480574] [Citation(s) in RCA: 129] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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23
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Abstract
BEBOVA-based TS determination has been very successful in elucidating enzyme mechanisms at a level of detail that would be otherwise inaccessible. The resulting TS structures have been used successfully as the basis for designing TS mimics as enzyme inhibitors with dissociation constants to 10(-11) M. The structure interpolation approach has systematized the process of finding a TS, increasing both the speed and the accuracy of TS determination. The combination of information from several TSs into a unified model increases the accuracy of the process significantly and results in an extremely sensitive probe of changes in TS with varying reaction conditions (i.e., enzymatic vs nonenzymatic reactions, different enzymes, or different nucleophiles). The TS determination process is summarized in Fig. 15.
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Affiliation(s)
- P J Berti
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, USA
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24
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Battin-Leclerc F, Kim IK, Talukdar RK, Portmann RW, Ravishankara AR, Steckler R, Brown D. Rate Coefficients for the Reactions of OH and OD with HCl and DCl between 200 and 400 K. J Phys Chem A 1999. [DOI: 10.1021/jp990177j] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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25
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26
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Glad SS, Jensen F. Kinetic Isotope Effects and Transition State Geometries. A Theoretical Investigation of E2 Model Systems. J Org Chem 1997; 62:253-260. [PMID: 11671397 DOI: 10.1021/jo9618379] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ab initio calculations at the MP2/6-31+G level have been performed on E2 model systems to investigate whether differences in kinetic isotope effects correlate with changes in transition state geometries. By combining various nucleophiles (NH(2)(-), OH(-), F(-), PH(2)(-), SH(-), Cl(-)) and leaving groups (NH(3), Br(-), Cl(-), F(-), SH(-)) for reactions of the type Nu(-) + CH(3)CH(2)X, a large diversity of transition structures from reactant-like to product-like are generated. For each reaction one primary and two different alpha-secondary kinetic isotope effects are calculated. The primary kinetic isotope effects depend strongly on the nucleophilic placement in the periodic system, which mainly is due to differences in equilibrium isotope effects. When this effect is subtracted, the primary kinetic isotope effects display the expected maximum for symmetric transition structures, although the maximum is broad. The secondary kinetic isotope effects associated with the leaving group provide a qualitative correlation with the hybridization at the carbon, but the corresponding effects at the carbon where the hydrogen abstraction takes place is uncorrelated with the transition state geometry.
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27
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Kumaran SS, Michael JV. Comment on “An Improved Potential Energy Surface for the H2Cl System and Its Use for Calculations of Rate Coefficients and Kinetic Isotope Effects” and “Quantum Mechanical Rate Coefficients for the Cl + H2 Reaction”. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp963086k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- S. S. Kumaran
- Chemistry Division, Argonne National Laboratory, Argonne, Illinois 60439
| | - J. V. Michael
- Chemistry Division, Argonne National Laboratory, Argonne, Illinois 60439
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28
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Aoiz FJ, Bañares L. Reaction Cross Sections and Rate Constants for the Cl + H2(D2) → HCl(DCl) + H(D) Reaction from Quasiclassical Trajectory Calculations on an ab Initio Potential Energy Surface. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp962059r] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Francisco J. Aoiz
- Departamento de Química Física, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - Luis Bañares
- Departamento de Química Física, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
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29
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Nielsen PA, Glad SS, Jensen F. Influence of Substituents on Kinetic Isotope Effects. J Am Chem Soc 1996. [DOI: 10.1021/ja961501g] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Peter Aa. Nielsen
- Contribution from the Research School of Chemistry, Australian National University, Canberra, ACT 0200 Australia, and Department of Chemistry, Odense University, DK-5230 Odense M., Denmark
| | - Sanne S. Glad
- Contribution from the Research School of Chemistry, Australian National University, Canberra, ACT 0200 Australia, and Department of Chemistry, Odense University, DK-5230 Odense M., Denmark
| | - Frank Jensen
- Contribution from the Research School of Chemistry, Australian National University, Canberra, ACT 0200 Australia, and Department of Chemistry, Odense University, DK-5230 Odense M., Denmark
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30
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Alagia M, Balucani N, Cartechini L, Casavecchia P, van Kleef EH, Volpi GG, Aoiz FJ, Bañares L, Schwenke DW, Allison TC, Mielke SL, Truhlar DG. Dynamics of the Simplest Chlorine Atom Reaction: An Experimental and Theoretical Study. Science 1996. [DOI: 10.1126/science.273.5281.1519] [Citation(s) in RCA: 87] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Affiliation(s)
- M. Alagia
- M. Alagia, N. Balucani, L. Cartechini, P. Casavecchia, E. H. van Kleef, G. G. Volpi, Dipartimento di Chimica, Universita di Perugia, 06100 Perugia, Italy
| | - N. Balucani
- M. Alagia, N. Balucani, L. Cartechini, P. Casavecchia, E. H. van Kleef, G. G. Volpi, Dipartimento di Chimica, Universita di Perugia, 06100 Perugia, Italy
| | - L. Cartechini
- M. Alagia, N. Balucani, L. Cartechini, P. Casavecchia, E. H. van Kleef, G. G. Volpi, Dipartimento di Chimica, Universita di Perugia, 06100 Perugia, Italy
| | - P. Casavecchia
- M. Alagia, N. Balucani, L. Cartechini, P. Casavecchia, E. H. van Kleef, G. G. Volpi, Dipartimento di Chimica, Universita di Perugia, 06100 Perugia, Italy
| | - E. H. van Kleef
- M. Alagia, N. Balucani, L. Cartechini, P. Casavecchia, E. H. van Kleef, G. G. Volpi, Dipartimento di Chimica, Universita di Perugia, 06100 Perugia, Italy
| | - G. G. Volpi
- M. Alagia, N. Balucani, L. Cartechini, P. Casavecchia, E. H. van Kleef, G. G. Volpi, Dipartimento di Chimica, Universita di Perugia, 06100 Perugia, Italy
| | - F. J. Aoiz
- F. J. Aoiz and L. Bañares, Departamento de Química Física, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - L. Bañares
- F. J. Aoiz and L. Bañares, Departamento de Química Física, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain
| | - D. W. Schwenke
- D. W. Schwenke, NASA Ames Research Center, Mail Stop 230-3, Moffett Field, CA 94035, USA
| | - T. C. Allison
- T. C. Allison, S. L. Mielke, D. G. Truhlar, Department of Chemistry, Chemical Physics Program, and Supercomputer Institute, University of Minnesota, Minneapolis, MN 55455, USA
| | - S. L. Mielke
- T. C. Allison, S. L. Mielke, D. G. Truhlar, Department of Chemistry, Chemical Physics Program, and Supercomputer Institute, University of Minnesota, Minneapolis, MN 55455, USA
| | - D. G. Truhlar
- T. C. Allison, S. L. Mielke, D. G. Truhlar, Department of Chemistry, Chemical Physics Program, and Supercomputer Institute, University of Minnesota, Minneapolis, MN 55455, USA
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Allison TC, Lynch GC, Truhlar DG, Gordon MS. An Improved Potential Energy Surface for the H2Cl System and Its Use for Calculations of Rate Coefficients and Kinetic Isotope Effects. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp960781j] [Citation(s) in RCA: 97] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Thomas C. Allison
- Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Gillian C. Lynch
- Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Donald G. Truhlar
- Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Mark S. Gordon
- Department of Chemistry, Iowa State University, Ames, Iowa 50011
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Truhlar DG, Garrett BC, Klippenstein SJ. Current Status of Transition-State Theory. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp953748q] [Citation(s) in RCA: 1585] [Impact Index Per Article: 56.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Donald G. Truhlar
- Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Bruce C. Garrett
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 902 Battelle Boulevard, MS K1-96, Richland, Washington 99352
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Hu WP, Truhlar DG. Factors Affecting Competitive Ion−Molecule Reactions: ClO- + C2H5Cl and C2D5Cl via E2 and SN2 Channels. J Am Chem Soc 1996. [DOI: 10.1021/ja952464g] [Citation(s) in RCA: 233] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Wei-Ping Hu
- Contribution from the Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455
| | - Donald G. Truhlar
- Contribution from the Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455
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Allison TC, Mielke SL, Schwenke DW, Lynch GC, Gordon MS, Truhlar DG. Die photochemische Bildung des Chlorwasserstoffs Dynamics of Cl + H2 ⇌ HC1 + H on a New Potential Energy Surface: The Photosynthesis of Hydrogen Chloride Revisited 100 Years after Max Bodenstein. ACTA ACUST UNITED AC 1996. [DOI: 10.1007/978-3-642-80299-7_8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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Kumaran SS, Lim KP, Michael JV. Thermal rate constants for the Cl+H2 and Cl+D2 reactions between 296 and 3000 K. J Chem Phys 1994. [DOI: 10.1063/1.468486] [Citation(s) in RCA: 72] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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36
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Melissas VS, Truhlar DG. Deuterium and carbon‐13 kinetic isotope effects for the reaction of OH with CH4. J Chem Phys 1993. [DOI: 10.1063/1.466230] [Citation(s) in RCA: 73] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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37
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Gonzalez AC, Tempelmann A, Arseneau DJ, Fleming DG, Senba M, Kempton JR, Pan JJ. Muonium reaction kinetics with the hydrogen halide gases. J Chem Phys 1992. [DOI: 10.1063/1.463693] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Rice BM, Garrett BC, Koszykowski ML, Foiles SM, Daw MS. Kinetic isotope effects for hydrogen diffusion in bulk nickel and on nickel surfaces. J Chem Phys 1990. [DOI: 10.1063/1.458381] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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40
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Schwenke DW, Tucker SC, Steckler R, Brown FB, Lynch GC, Truhlar DG, Garrett BC. Global potential‐energy surfaces for H2Cl. J Chem Phys 1989. [DOI: 10.1063/1.455914] [Citation(s) in RCA: 76] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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41
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Joseph T, Steckler R, Truhlar DG. A new potential energy surface for the CH3+H2↔CH4+H reaction: Calibration and calculations of rate constants and kinetic isotope effects by variational transition state theory and semiclassical tunneling calculations. J Chem Phys 1987. [DOI: 10.1063/1.453349] [Citation(s) in RCA: 116] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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42
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Persky A, Broida M. Quasiclassical trajectory studies of the chlorine–hydrogen system. V. The reactions of Cl atoms with T2, HT, and DT. J Chem Phys 1986. [DOI: 10.1063/1.450337] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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44
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Steckler R, Truhlar DG, Garrett BC. Variational transition state theory calculations of the reaction rates of F with H2, D2, and HD and the intermolecular and intramolecular kinetic isotope effects. J Chem Phys 1985. [DOI: 10.1063/1.448585] [Citation(s) in RCA: 87] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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