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A detailed analysis of the spin-crossover reaction of H 2S binding to heme and the six-coordinated FeP(Im)-HS - porphyrin complex. J Inorg Biochem 2020; 206:111049. [PMID: 32171934 DOI: 10.1016/j.jinorgbio.2020.111049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 02/21/2020] [Accepted: 02/22/2020] [Indexed: 11/23/2022]
Abstract
The potential energy surfaces of the H2S binding to iron-porphyrin (FeP) with the imidazole (Im) ligand via intersystem crossings are investigated by using density functional theory. The minimum energy intersystem crossing point (MEISCP) between the quintet and triplet states (MEISCPTQ) for the Fe(II)P(Im)-H2S complex is located at a Fe-S distance of 3.39 Å with only 1.1 kcal/mol above the quintet state minimum. The second spin-crossover point, where a change from the triplet to the singlet state occurs, comes at a much shorter Fe-S distance of 2.79 Å, and the MEISCPST is located at 3.7 kcal/mol above the triplet state minimum. The nature of the chemical bonding along the Fe-S reaction coordinate from the ground state singlet to the quintet state along the path to the separated species is analyzed. An inspection of the vibrational modes reveals that the largest contribution to the triplet-quintet transition around the quintet and triplet state minimum comes from the symmetric shrinking of the pyrrole units of the porphyrin ring, indicating that the related reaction coordinate plays a main role in the intersystem crossing. The fully optimized structures of the Fe(II)P(Im)-HS- complex corresponding to three different spin multiplicities (M = 1, 3, 5) are characterized by a bent Fe-H-S conformation. The binding of the hydrosulfide anion to Fe(II)P(Im) in the quintet state induces a 0.2 Å displacement of the Fe atom out of the nitrogen porphyrin (Npyr) plane. The fully optimized structure of the ground state of Fe(II)P(Im)-HS- agrees well with experimental data for the corresponding heme models.
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Bop CT, Trabelsi T, Hammami K, Mogren Al Mogren M, Lique F, Hochlaf M. Cold collisions of SH− with He: Potential energy surface and rate coefficients. J Chem Phys 2017; 147:124301. [DOI: 10.1063/1.4994970] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- C. T. Bop
- Laboratory of Atoms Lasers, Department of Physics, Faculty of Sciences and Techniques, University Cheikh Anta Diop of Dakar, Dakar, Senegal
| | - T. Trabelsi
- Laboratory of Atomic Molecular Spectroscopy and Applications, Department of Physics, Faculty of Sciences, University Tunis El Manar, Campus Universities, 1060 Tunis, Tunisia
| | - K. Hammami
- Laboratory of Atomic Molecular Spectroscopy and Applications, Department of Physics, Faculty of Sciences, University Tunis El Manar, Campus Universities, 1060 Tunis, Tunisia
| | - M. Mogren Al Mogren
- Chemistry Department, Faculty of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Kingdom of Saudi Arabia
| | - F. Lique
- LOMC-UMR 6294, CNRS-Université du Havre, 25 Rue Philippe Lebon, BP 1123, 76 063 Le Havre Cedex, France
| | - M. Hochlaf
- Université Paris-Est, Laboratoire Modélisation et Simulation Multi Echelle, MSME UMR 8208 CNRS, 5 Blvd. Descartes, F-77454 Marne-la-Vallée, France
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Sebald P, Stein C, Oswald R, Botschwina P. Rovibrational States of N3– and CO2 Up to High J: A Theoretical Study Beyond fc-CCSD(T). J Phys Chem A 2013; 117:13806-14. [DOI: 10.1021/jp4081806] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Peter Sebald
- Institute of Physical Chemistry, University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
| | - Christopher Stein
- Institute of Physical Chemistry, University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
| | - Rainer Oswald
- Institute of Physical Chemistry, University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
| | - Peter Botschwina
- Institute of Physical Chemistry, University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
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Gao S, Mo Y. Ion-pair dissociation dynamics of H2S in the photon energy range 15.26-15.55 eV. J Phys Chem A 2011; 115:1781-6. [PMID: 21344893 DOI: 10.1021/jp108808w] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The H(+) velocity map images from the ion-pair dissociation of H(2)S + hν → SH(-)(X(1)Σ(+), υ = 0, 1) + H(+) have been measured at the excitation energies 15.259, 15.395, and 15.547 eV, respectively. The experimental results show that most of the available energies are transformed into the translational energies. The angular distributions of the fragments SH(-)(X(1)Σ(+), υ = 0) indicate that the dissociation occurs via pure parallel transition with limiting anisotropy parameter of +2. Because the ion-pair dissociation usually occurs via the predissociation of Rydberg states, this suggests that the ion cores of the excited Rydberg states have linear geometries. The geometries and electronic structures of the linear H(2)S(+) have been calculated employing the quantum chemistry calculation method at the CASPT2/avqz level. The electronic structures for the ion-pair states have been calculated at the CASSCF/avtz level, which indicates that the equilibrium geometries of the ion-pair states have bent geometries.
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Affiliation(s)
- Shumin Gao
- Department of Physics and Key Laboratory for Atomic and Molecular Nanosciences, Tsinghua University, Beijing 100084, China
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Amano T. Extended negative glow and “hollow anode” discharges for submillimeter-wave observation of CN−, C2H−, and C4H−. J Chem Phys 2008; 129:244305. [DOI: 10.1063/1.3043739] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
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Wild DA, Lenzer T. Structures and infrared spectra of fluoride–hydrogen sulfide clusters from ab initio calculations: F–-(H2S)n, n= 1–5. Phys Chem Chem Phys 2005; 7:3793-804. [PMID: 16358028 DOI: 10.1039/b510923j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Clusters formed between a fluoride anion and several hydrogen sulfide molecules have been investigated via ab initio calculations at the MP2 level of theory, using Dunning's augmented correlation consistent basis sets. Optimised geometries, vibrational frequencies, and enthalpy changes for the ligand association reactions are presented for clusters with up to five H2S ligands interacting with a F- anion. The minimum energy structure for the 1:1 F(-)-H2S complex features proton transfer from the H2S to the F- anion, forming a planar C(s) symmetry FH...SH- structure. For the F(-)-(H2S)2 cluster, the FH...SH- core remains and is solvated by a perturbed H2S ligand. For the larger F(-)-(H2S)(3-5) clusters, in addition to the FH...SH(-)-(H2S)n cluster forms, other minima featuring a 'solvated F-' anion are predicted. Calculated infrared spectra for the minima of each cluster size are presented to aid in assigning spectra from future experimental studies.
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Affiliation(s)
- D A Wild
- MPI für biophysikalische Chemie, Abteilung Spektroskopie und Photochemische Kinetik (10100), Am Fassberg 11, D-37077, Göttingen, Germany.
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Affiliation(s)
- Robert J. Hinde
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996-1600
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Shiell RC, Hu XK, Hu QJ, Hepburn JW. A Determination of the Bond Dissociation Energy (D0(H−SH)): Threshold Ion-Pair Production Spectroscopy (TIPPS) of a Triatomic Molecule. J Phys Chem A 2000. [DOI: 10.1021/jp000025k] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- R. C. Shiell
- Chemistry Department, University of Waterloo, Waterloo, ON N2L 3G1 Canada
| | - X. K. Hu
- Chemistry Department, University of Waterloo, Waterloo, ON N2L 3G1 Canada
| | - Q. J. Hu
- Chemistry Department, University of Waterloo, Waterloo, ON N2L 3G1 Canada
| | - J. W. Hepburn
- Chemistry Department, University of Waterloo, Waterloo, ON N2L 3G1 Canada
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Botschwina P, Seeger S, Mladenović M, Schulz B, Horn M, Schmatz S, Flügge J, Oswald R. Quantum-chemical investigations of small molecular anions. INT REV PHYS CHEM 1995. [DOI: 10.1080/01442359509353308] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Kitsopoulos T, Waller I, Loeser J, Neumark D. High resolution threshold photodetachment spectroscopy of negative ions. Chem Phys Lett 1989. [DOI: 10.1016/0009-2614(89)87488-3] [Citation(s) in RCA: 84] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Lee TJ, Willetts A, Gaw JF, Handy NC. The molecular structure and vibrational spectrum of the cyclopropenyl cation, C3H+3, and its deuterated isotopomers. J Chem Phys 1989. [DOI: 10.1063/1.456644] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Clabo D, Allen WD, Remington RB, Yamaguchi Y, Schaefer HF. A systematic study of molecular vibrational anharmonicity and vibration—rotation interaction by self-consistent-field higher-derivative methods. Asymmetric top molecules. Chem Phys 1988. [DOI: 10.1016/0301-0104(88)87271-9] [Citation(s) in RCA: 439] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Rehfuss BD, Liu D, Dinelli BM, Jagod M, Ho WC, Crofton MW, Oka T. Infrared spectroscopy of carbo‐ions. IV. TheA 2Πu–X 2Σ+gelectronic transition of C−2. J Chem Phys 1988. [DOI: 10.1063/1.455731] [Citation(s) in RCA: 57] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Gruebele M, Polak M, Saykally RJ. Diode laser velocity modulation spectroscopy of carbanions: The CC stretching vibration of C2H−. J Chem Phys 1987. [DOI: 10.1063/1.453278] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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