Diatomics‐in‐molecules models for H2O and H2O−. II. A self‐consistent description of the1A′,1A″,3A′, and3A″states of H2O

Atomic Spectral Methods for Ab Initio Molecular Electronic Energy Surfaces: Transitioning From Small-Molecule to Biomolecular-Suitable Approaches

Continuing attention has addressed incorportation of the electronically dynamical attributes of biomolecules in the largely static first-generation molecular-mechanical force fields commonly employed in molecular-dynamics simulations. We describe here a universal quantum-mechanical approach to calculations of the electronic energy surfaces of both small molecules and large aggregates on a common basis which can include such electronic attributes, and which also seems well-suited to adaptation in ab initio molecular-dynamics applications. In contrast to the more familiar orbital-product-based methodologies employed in traditional small-molecule computational quantum chemistry, the present approach is based on an "ex-post-facto" method in which Hamiltonian matrices are evaluated prior to wave function antisymmetrization, implemented here in the support of a Hilbert space of orthonormal products of many-electron atomic spectral eigenstates familiar from the van der Waals theory of long-range interactions. The general theory in its various forms incorporates the early semiempirical atoms- and diatomics-in-molecules approaches of Moffitt, Ellison, Tully, Kuntz, and others in a comprehensive mathematical setting, and generalizes the developments of Eisenschitz, London, Claverie, and others addressing electron permutation symmetry adaptation issues, completing these early attempts to treat van der Waals and chemical forces on a common basis. Exact expressions are obtained for molecular Hamiltonian matrices and for associated energy eigenvalues as sums of separate atomic and interaction-energy terms, similar in this respect to the forms of classical force fields. The latter representation is seen to also provide a long-missing general definition of the energies of individual atoms and of their interactions within molecules and matter free from subjective additional constraints. A computer code suite is described for calculations of the many-electron atomic eigenspectra and the pairwise-atomic Hamiltonian matrices required for practical applications. These matrices can be retained as functions of scalar atomic-pair separations and employed in assembling aggregate Hamiltonian matrices, with Wigner rotation matrices providing analytical representations of their angular degrees of freedom. In this way, ab initio potential energy surfaces are obtained in the complete absence of repeated evaluations and transformations of the one- and two-electron integrals at different molecular geometries required in most ab inito molecular calculations, with large Hamiltonian matrix assembly simplified and explicit diagonalizations avoided employing partitioning and Brillouin-Wigner or Rayleigh-Schrödinger perturbation theory. Illustrative applications of the important components of the formalism, selected aspects of the scaling of the approach, and aspects of "on-the-fly" interfaces with Monte Carlo and molecular-dynamics methods are described in anticipation of subsequent applications to biomolecules and other large aggregates.

Dynamics of insertion reactions of H2 molecules with excited atoms

Recent progress in the study of insertion reactions of hydrogen molecules with excited atoms is reviewed in this article. In particular, the dynamics of the reaction of O(1D), N(2D), C(1D), and S(1D) with H2 and its isotopomers, which have received a great deal of attention over the past decade, are examined in detail. All of these systems have in common the existence of several potential energy surfaces (PES) correlating with the reagents' states, and consequently, they can give rise to reaction following different adiabatic and nonadiabatic pathways. The main contribution, however, arises from their ground singlet PESs which feature the existence of deep wells with small or null barriers for insertion. Accordingly, these reactions proceed mainly via formation of relatively long-lived collision complexes and display an overall nearly statistical behavior. In spite of their similarities, the various reactions have peculiar characteristics caused by important differences of their respective PESs. The contribution of excited PES to the global reactivity, which has also become an important issue and a challenge both for theory and experiment, is also examined. The different theoretical approaches are discussed in the text, along with the experimental results obtained by a variety of techniques. The recent exact quantum treatments of these reactive systems together with the development of a rigorous statistical model have contributed to a very accurate description which in many cases matches very well the detailed measurements. The quasi-classical trajectory (QCT) method has also provided a fairly accurate description of the reaction dynamics for these systems. In particular, the analysis in terms of collision times has yielded interesting clues about the reaction mechanisms.