1
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Ariyageadsakul P, Baeck KK. Dynamics of FHCl Including Two Bidirectional Dissociation Channels: Comparative Study Using Quantum Nuclear Wavepackets and Semiclassical Trajectory Surface Hopping. J Phys Chem A 2024; 128:8659-8671. [PMID: 39321032 DOI: 10.1021/acs.jpca.4c04346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2024]
Abstract
The dynamics starting from the charge transfer excited state of neutral FHCl includes two bidirectional dissociation channels, producing "FH" and "Cl" fragments or "F" and "HCl" fragments by electron-transfer (ET) or proton-transfer (PT) processes, respectively. The quantum features of its dynamics were studied using the quantum dynamics of nuclear wavepacket propagation and the semiclassical dynamics of trajectory surface hopping propagation. The MS-CASPT2(17,11)/aug-cc-pVTZ method was used for calculating the energies of electronic states. Two critical quantum features identified in previous studies were the dominance of PT over ET and the ∼80 fs time gap between the onset of the earlier PT and the later ET processes. These features, in contrast to classical anticipation, were confirmed again, and their classical interpretations were developed based on the results of semiclassical dynamics. The relative location of nonadiabatic regions with respect to the starting point of dynamics and the activation of angular motion altering the HFCl angle play crucial roles in governing the two quantum features.
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Affiliation(s)
- Pinit Ariyageadsakul
- Department of Chemistry, National Gangneung-Wonju University, Gangneung, Gangwon-do 25457, Republic of Korea
| | - Kyoung Koo Baeck
- Department of Chemistry, National Gangneung-Wonju University, Gangneung, Gangwon-do 25457, Republic of Korea
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2
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Zaporozhets I, Musil F, Kapil V, Clementi C. Accurate nuclear quantum statistics on machine-learned classical effective potentials. J Chem Phys 2024; 161:134102. [PMID: 39352405 DOI: 10.1063/5.0226764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Accepted: 09/13/2024] [Indexed: 10/03/2024] Open
Abstract
The contribution of nuclear quantum effects (NQEs) to the properties of various hydrogen-bound systems, including biomolecules, is increasingly recognized. Despite the development of many acceleration techniques, the computational overhead of incorporating NQEs in complex systems is sizable, particularly at low temperatures. In this work, we leverage deep learning and multiscale coarse-graining techniques to mitigate the computational burden of path integral molecular dynamics (PIMD). In particular, we employ a machine-learned potential to accurately represent corrections to classical potentials, thereby significantly reducing the computational cost of simulating NQEs. We validate our approach using four distinct systems: Morse potential, Zundel cation, single water molecule, and bulk water. Our framework allows us to accurately compute position-dependent static properties, as demonstrated by the excellent agreement obtained between the machine-learned potential and computationally intensive PIMD calculations, even in the presence of strong NQEs. This approach opens the way to the development of transferable machine-learned potentials capable of accurately reproducing NQEs in a wide range of molecular systems.
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Affiliation(s)
- Iryna Zaporozhets
- Department of Physics, Freie Universität Berlin, Arnimallee 12, 14195 Berlin, Germany
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
- Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, USA
| | - Félix Musil
- Department of Physics, Freie Universität Berlin, Arnimallee 12, 14195 Berlin, Germany
| | - Venkat Kapil
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
- Department of Physics and Astronomy, University College, London WC1E 6BT, United Kingdom
- Thomas Young Centre and London Centre for Nanotechnology, London WC1E 6BT, United Kingdom
| | - Cecilia Clementi
- Department of Physics, Freie Universität Berlin, Arnimallee 12, 14195 Berlin, Germany
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
- Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, USA
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3
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Liu Z, Chen YC, Ao P. Entangled biphoton generation in the myelin sheath. Phys Rev E 2024; 110:024402. [PMID: 39294965 DOI: 10.1103/physreve.110.024402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 07/09/2024] [Indexed: 09/21/2024]
Abstract
Consciousness within the brain hinges on the synchronized activities of millions of neurons, but the mechanism responsible for orchestrating such synchronization remains elusive. In this study we employ cavity quantum electrodynamics to explore entangled biphoton generation through cascade emission in the vibration spectrum of C-H bonds within the lipid molecules' tails. The results indicate that the cylindrical cavity formed by a myelin sheath can facilitate spontaneous photon emission from the vibrational modes and generate a significant number of entangled photon pairs. The abundance of C-H bond vibration units in neurons can therefore serve as a source of quantum entanglement resources for the nervous system. These findings may offer insight into the brain's ability to leverage these resources for quantum information transfer, thereby elucidating a potential source for the synchronized activity of neurons.
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4
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Trabelsi T, Lipson J, Francisco JS. ClSO and ClSO2 photochemistry: Implications for the Venusian atmosphere. J Chem Phys 2024; 161:044303. [PMID: 39037139 DOI: 10.1063/5.0218751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 07/05/2024] [Indexed: 07/23/2024] Open
Abstract
The electronic structure and spectroscopy of ClSOx (x = 1 and 2) isomers were investigated using coupled cluster theory and multireference interaction methods. In this study, the equilibrium geometry and harmonic vibrational frequencies of these isomers in their ground electronic state were shown. Our analysis of the vertical excitation energy and potential energy surface showed the photochemical instability of ClSO for wavelengths below 280 nm. Furthermore, the photodissociation of ClSO was unlikely to cause the formation of diatomic ClS. At the same time, ClSO could form atomic chlorine and SO as a result of photodissociation through the repulsive states. In the case of ClSO2, a novel weakly bound Cl-SO2 isomer was identified, indicating the potential influences on the chlorine and SO2 reactions. The potential energy surface of the most stable ClSO2 isomer also indicated the potential production of SO2 in both its ground and excited states. In addition, the electronic spectrum of ClSO2 was predicted to be broad, with numerous significant peaks in the near-UV‒Vis range. Valuable new insights into the chemical role of chlorine and sulfur in Venus's atmosphere were provided, along with a discussion of a potential mechanism contributing to the H2O and SO2 depletion in Venus's atmosphere.
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Affiliation(s)
- Tarek Trabelsi
- Department of Earth and Environmental Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, USA
| | - Juliette Lipson
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
| | - Joseph S Francisco
- Department of Earth and Environmental Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, USA
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
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5
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Xu Y, Peschel MT, Jänchen M, Foja R, Storch G, Thyrhaug E, de Vivie-Riedle R, Hauer J. Determining Excited-State Absorption Properties of a Quinoid Flavin by Polarization-Resolved Transient Spectroscopy. J Phys Chem A 2024; 128:3830-3839. [PMID: 38709806 PMCID: PMC11103687 DOI: 10.1021/acs.jpca.4c01260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 04/19/2024] [Accepted: 04/25/2024] [Indexed: 05/08/2024]
Abstract
As important naturally occurring chromophores, photophysical/chemical properties of quinoid flavins have been extensively studied both experimentally and theoretically. However, little is known about the transition dipole moment (TDM) orientation of excited-state absorption transitions of these important compounds. This aspect is of high interest in the fields of photocatalysis and quantum control studies. In this work, we employ polarization-associated spectra (PAS) to study the excited-state absorption transitions and the underlying TDM directions of a standard quinoid flavin compound. As compared to transient absorption anisotropy (TAA), an analysis based on PAS not only avoids diverging signals but also retrieves the relative angle for ESA transitions with respect to known TDM directions. Quantum chemical calculations of excited-state properties lead to good agreement with TA signals measured in magic angle configuration. Only when comparing experiment and theory for TAA spectra and PAS, do we find deviations when and only when the S0 → S1 of flavin is used as a reference. We attribute this to the vibronic coupling of this transition to a dark state. This effect is only observed in the employed polarization-controlled spectroscopy and would have gone unnoticed in conventional TA.
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Affiliation(s)
- Yi Xu
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Martin T. Peschel
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, 81377 München, Germany
| | - Miriam Jänchen
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Richard Foja
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Golo Storch
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Erling Thyrhaug
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | | | - Jürgen Hauer
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
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6
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Phuc NT. Semiclassical Truncated-Wigner-Approximation Theory of Molecular Vibration-Polariton Dynamics in Optical Cavities. J Chem Theory Comput 2024; 20:3019-3027. [PMID: 38608260 DOI: 10.1021/acs.jctc.4c00078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/14/2024]
Abstract
It has been experimentally demonstrated that molecular-vibration polaritons formed by strong coupling of a molecular vibration to an infrared cavity mode can significantly modify the physical properties and chemical reactivities of various molecular systems. However, a complete theoretical understanding of the underlying mechanisms of the modifications remains elusive due to the complexity of the hybrid system, especially the collective nature of polaritonic states in systems containing many molecules. We develop here the semiclassical theory of molecular vibration-polariton dynamics based on the truncated Wigner approximation (TWA) that is tractable in large molecular systems and simultaneously captures the quantum character of photons in the optical cavity. The theory is then applied to investigate the nuclear quantum dynamics of a system of identical diatomic molecules having the ground-state Morse potential and being strongly coupled to an infrared cavity mode in the ultrastrong coupling regime. The validity of TWA is examined by comparing it with the full quantum dynamics of a single-molecule system for two different initial states in the dipole and Coulomb gauges. For the initial tensor-product ground state in the dipole gauge, which corresponds to a light-matter entangled state in the Coulomb gauge, the collective and resonance effects of molecular vibration-polariton formation on the nuclear dynamics are observed in a system of many molecules.
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Affiliation(s)
- Nguyen Thanh Phuc
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
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7
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Allan L, Zuehlsdorff TJ. Taming the third order cumulant approximation to linear optical spectroscopy. J Chem Phys 2024; 160:074108. [PMID: 38380749 DOI: 10.1063/5.0182745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 01/23/2024] [Indexed: 02/22/2024] Open
Abstract
The second order cumulant method offers a promising pathway to predicting optical properties in condensed phase systems. It allows for the computation of linear absorption spectra from excitation energy fluctuations sampled along molecular dynamics (MD) trajectories, fully accounting for vibronic effects, direct solute-solvent interactions, and environmental polarization effects. However, the second order cumulant approximation only guarantees accurate line shapes for energy gap fluctuations obeying Gaussian statistics. A third order correction has recently been derived but often yields unphysical spectra or divergent line shapes for moderately non-Gaussian fluctuations due to the neglect of higher order terms in the cumulant expansion. In this work, we develop a corrected cumulant approach, where the collective effect of neglected higher order contributions is approximately accounted for through a dampening factor applied to the third order cumulant term. We show that this dampening factor can be expressed as a function of the skewness and kurtosis of energy gap fluctuations and can be parameterized from a large set of randomly sampled model Hamiltonians for which exact spectral line shapes are known. This approach is shown to systematically remove unphysical contributions in the form of negative absorbances from cumulant spectra in both model Hamiltonians and condensed phase systems sampled from MD and dramatically improves over the second order cumulant method in describing systems exhibiting Duschinsky mode mixing effects. We successfully apply the approach to the coumarin-153 dye in toluene, obtaining excellent agreement with experiment.
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Affiliation(s)
- Lucas Allan
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331, USA
| | - Tim J Zuehlsdorff
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331, USA
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8
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Hepguler A, Ulukan P, Catak S. The photophysical properties of sulfone-based TADF emitters in relation to their structural properties. Phys Chem Chem Phys 2023; 25:31457-31470. [PMID: 37962481 DOI: 10.1039/d3cp03557c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
In this work, thermally activated delayed fluorescence (TADF) of a series of emitters with sulfone-based acceptor moieties was studied by density functional theory (DFT) methods. Sulfone derivatives were shown to be high performing TADF emitters over recent years. When discussing the TADF efficiency, various properties, such as the singlet-triplet energy gap (ΔEST), spin-orbit coupling (SOC) and the nature of states, stand out due to their roles in reverse intersystem crossing (RISC). Here, we mainly focused on three important structural parameters that affect the intersystem crossing (ISC) and RISC pathways and their efficiencies. These three parameters are: (1) the effect of meta- and para-conjugation, (2) the effect of rigid acceptor moieties and (3) the effect of the phenyl bridge on photophysical properties.
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Affiliation(s)
- Aslıhan Hepguler
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
| | - Pelin Ulukan
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
| | - Saron Catak
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
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9
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Geng P, Zybin S, Naserifar S, Goddard WA. Quantum mechanics based non-bonded force field functions for use in molecular dynamics simulations of materials and systems: The nitrogen and oxygen columns. J Chem Phys 2023; 159:164104. [PMID: 37873955 DOI: 10.1063/5.0174188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 09/25/2023] [Indexed: 10/25/2023] Open
Abstract
Accurate Force Fields (FFs) are essential for Molecular Dynamics (MD) simulations of the dynamics of realistic materials in terms of atomic-level interactions. The FF parameters of short-range valence interactions can be derived through Quantum Mechanical (QM) calculations on model systems practical for QM (<300 atoms). Similarly, the dynamic electrostatic interactions can be described with methods such as QEq or PQEq that allow charges and polarization to adjust dynamically. However, accurately extracting long-range van der Waals (vdW) interactions from QM calculations poses challenges due to the absence of a definitive method to distinguish between the different energetic components of electrostatics, polarization, vdW, hydrogen bonding, and valence interactions. To do this we use the Perdew-Burke-Ernzerhof flavor of Density Functional Theory, including empirical D3 vdW corrections, to predict the Equation of State for each element (keeping any covalent bonds fixed), from which we obtain the two-body vdW nonbond potential. Here, we extend these calculations to include non-bonded parameters for the N and O columns of the periodic table so that we now describe columns 15 (N), 16 (O), 17 (F), and 18 (Ne) of the periodic table. For these 20 elements, we find that the two-body vdW potentials can all be mapped to a single universal two-body curve, with just three scaling parameters: Re, De, and L. We refer to this as the Universal NonBond (UNB) potential. We expect this to be useful for new MD simulations and a helpful starting point to obtain UNB parameters for the remainder of the periodic table.
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Affiliation(s)
- Peng Geng
- Materials and Process Simulation Center (MSC), California Institute of Technology, Pasadena, California 91125, USA
| | - Sergey Zybin
- Materials and Process Simulation Center (MSC), California Institute of Technology, Pasadena, California 91125, USA
| | - Saber Naserifar
- Materials and Process Simulation Center (MSC), California Institute of Technology, Pasadena, California 91125, USA
| | - William A Goddard
- Materials and Process Simulation Center (MSC), California Institute of Technology, Pasadena, California 91125, USA
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10
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Qu Z, Guo Y, Zhang J, Zhou Z. Mesomerism induced temperature-dependent multicomponent phosphorescence emissions in ClBDBT. Chem Sci 2023; 14:10096-10102. [PMID: 37772120 PMCID: PMC10529706 DOI: 10.1039/d3sc03963c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 08/16/2023] [Indexed: 09/30/2023] Open
Abstract
Quantum mechanics/molecular mechanics (QM/MM) and molecular dynamics (MD) methods were applied to systematically investigate the temperature-dependent phosphorescence emission of dibenzo[b,d]thiophen-2-yl(4-chlorophenyl)methanone (ClBDBT) and its derivatives. The calculated temperature-dependent spectra on the lowest triplet state (T1) are in good agreement with the experimental observations, which means that the two-component white light emission should stem from the T1 state. The further MD simulations demonstrate the existence of two mesomerism structures at room temperature which can emit two lights simultaneously. The multi-component light emissions induced by mesomerism structures have advantages in balancing the distribution of excitons which could be beneficial to obtain pure white light along with stable Commission Internationale de l'Éclairage (CIE) coordinates. We hope this mesomerism concept can be further used to design new white light emitters based on room-temperature phosphorescence.
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Affiliation(s)
- Zexing Qu
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University Changchun 130023 China
| | - Yujie Guo
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University Changchun 130023 China
| | - Jilong Zhang
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University Changchun 130023 China
| | - Zhongjun Zhou
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University Changchun 130023 China
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11
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Zhou L, Ni H, Jiang Z, Qiang J, Jiang W, Zhang W, Lu P, Wen J, Lin K, Zhu M, Dörner R, Wu J. Ultrafast formation dynamics of D 3+ from the light-driven bimolecular reaction of the D 2-D 2 dimer. Nat Chem 2023; 15:1229-1235. [PMID: 37264104 DOI: 10.1038/s41557-023-01230-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 05/04/2023] [Indexed: 06/03/2023]
Abstract
The light-driven formation of trihydrogen cation has been attracting considerable attention because of its important role as an initiator of chemical reactions in interstellar clouds. To understand the formation dynamics, most previous studies focused on creating H3+ or D3+ from unimolecular reactions of various organic molecules. Here we observe and characterize the ultrafast formation dynamics of D3+ from a bimolecular reaction, using pump-probe experiments that employ ultrashort laser pulses to probe its formation from a D2-D2 dimer. Our molecular dynamics simulations provide an intuitive representation of the reaction dynamics, which agree well with the experimental observation. We also show that the emission direction of D3+ can be controlled using a tailored two-colour femtosecond laser field. The underlying control mechanism is in line with what is known from the light control of electron localization in the bond breaking of single molecules.
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Affiliation(s)
- Lianrong Zhou
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Hongcheng Ni
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, China
| | - Zhejun Jiang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Junjie Qiang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Wenyu Jiang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Wenbin Zhang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Peifen Lu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Jin Wen
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University, Shanghai, China.
| | - Kang Lin
- Institut für Kernphysik, Goethe-Universität Frankfurt am Main, Frankfurt, Germany.
| | - Meifang Zhu
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University, Shanghai, China
| | - Reinhard Dörner
- Institut für Kernphysik, Goethe-Universität Frankfurt am Main, Frankfurt, Germany
| | - Jian Wu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China.
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, China.
- Chongqing Key Laboratory of Precision Optics, Chongqing Institute of East China Normal University, Chongqing, China.
- CAS Center for Excellence in Ultra-intense Laser Science, Shanghai, China.
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12
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Guerrero RD, Reyes A. Optimizing Quantum Control Pulses with Gaussian Process Priors: The Spectral Way. J Phys Chem A 2023; 127:6123-6134. [PMID: 37462537 DOI: 10.1021/acs.jpca.3c03162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
Abstract
This study presents the Gaussian Process Prior Optimization for Pulse Shaping (GPPOPS) methodology, a novel approach to pulse shaping engineering. Its main objective is to efficiently identify laser pulse shapes that can achieve a desired task encoded in a cost function while being experimentally implementable. The AlH+ molecule was utilized as a test case to find pulse shapes that maximized vibronic transitions. The results demonstrate that optimal pulses can be readily implemented using current laser technology and that their control capabilities can withstand noise. The study emphasizes the benefits of constructing a surrogate approach to the control landscape during the optimization process. This approach is expected to be versatile, efficient and readily implementable in the laboratory. Its demonstrated robustness to noise sets it apart from other numerical pulse shaping engineering methods. By reducing the required experimental labor, this method has the potential to facilitate breakthroughs in quantum engineering.
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Affiliation(s)
- Rubén Darío Guerrero
- Quantum and Computational Chemistry Group, Universidad Nacional de Colombia, Bogota 111321, Colombia
| | - Andrés Reyes
- Quantum and Computational Chemistry Group, Universidad Nacional de Colombia, Bogota 111321, Colombia
- Department of Chemistry, Universidad Nacional de Colombia, Bogota 111321, Colombia
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13
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Vörös D, Mai S. Role of Ultrafast Internal Conversion and Intersystem Crossing in the Nonadiabatic Relaxation Dynamics of ortho-Nitrobenzaldehyde. J Phys Chem A 2023. [PMID: 37405967 PMCID: PMC10364085 DOI: 10.1021/acs.jpca.3c02899] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/07/2023]
Abstract
ortho-Nitrobenzaldehyde (oNBA) is a well-known photoactivated acid and a prototypical photolabile nitro-aromatic compound. Despite extensive investigations, the ultrafast relaxation dynamics of oNBA is still not properly understood, especially concerning the role of the triplet states. In this work, we provide an in-depth picture of this dynamics by combining single- and multireference electronic structure methods with potential energy surface exploration and nonadiabatic dynamics simulations using the Surface Hopping including ARbitary Couplings (SHARC) approach. Our results reveal that the initial decay from the bright ππ* state to the S1 minimum is barrierless. It involves three changes in electronic structure from ππ* (ring) to nπ* (nitro group), to nπ* (aldehyde group), and then to another nπ* (nitro group). The decay of the ππ* takes 60-80 fs and can be tracked with time-resolved luminescence spectroscopy, where we predict for the first time a short-lived coherence of the luminescence energy with a 25 fs period. Intersystem crossing can occur already during the S4 → S1 deactivation cascade but also from S1, with a time constant of about 2.4 ps and such that first a triplet ππ* state localized on the nitro group is populated. The triplet population first evolves into an nπ* and then quickly undergoes hydrogen transfer to form a biradical intermediate, from where the ketene is eventually produced. The majority of the excited population decays from S1 through two conical intersections of equal utilization, a previously unreported one involving a scissoring motion of the nitro group that leads back to the oNBA ground state and the one involving hydrogen transfer that leads to the ketene intermediate.
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Affiliation(s)
- Dóra Vörös
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
- Vienna Doctoral School in Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
| | - Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
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14
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Mandal M, Rajak K, Maiti B. Mechanistic Insight and Intersystem Crossing Dynamics of the C( 3P) + H 2CO/D 2CO Reaction. J Phys Chem A 2023. [PMID: 37209129 DOI: 10.1021/acs.jpca.3c01480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The reaction of atomic carbon, C(3P), with H2CO has been investigated using the direct dynamics trajectory surface hopping (DDTSH) method with Tully's fewest switches algorithm. The lowest lying ground triplet and single states are considered for the dynamics study at a reagent collision energy of 8.0 kcal/mol. From the trajectory calculations, we observed that CH2 + CO and H + HCCO are the two major product channels for the title reaction. The insertion mechanism of the C(3P) + H2CO reaction is rather complex and is followed by three distinct intermediates with no entrance channel barrier to the reaction on the B3LYP/6-31G(d,p) potential energy surfaces. The triplet insertion complexes are formed by three different approaches; "Sideways", "End-on" and "Head-on" attack of the triplet carbon atom toward H2CO molecule. Our dynamics calculations predict a new product channel (H + HCCO(X 2A'')) with a contribution of ∼46% of the overall products formation via ketocarbene intermediate through "Head-on" approach. Despite the weak spin-orbit coupling (SOC) interactions, intersystem crossing (ISC) via a ketocarbene intermediate has a small but significant contribution, about 2.3%, for the CH2 + CO channel. To understand the kinetic isotope effects on the reaction dynamics, we have extended our study for the C(3P) + D2CO reaction. It is seen that isotopic substitution of both the H atoms has a small reduction in the extent of ISC dynamics for the carbene formation. Our results, certainly, reveal the importance of the ketocarbene intermediate and the H + HCCO products channel as one of the major product formation channels in the title reaction, which was not reported earlier.
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Affiliation(s)
- Mrinmoy Mandal
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Karunamoy Rajak
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Biswajit Maiti
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
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15
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Hernández F, Cox JM, Li J, Crespo-Otero R, Lopez SA. Multiconfigurational Calculations and Photodynamics Describe Norbornadiene Photochemistry. J Org Chem 2023; 88:5311-5320. [PMID: 37022327 PMCID: PMC10629221 DOI: 10.1021/acs.joc.2c02758] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Indexed: 04/07/2023]
Abstract
Storing solar energy is a vital component of using renewable energy sources to meet the growing demands of the global energy economy. Molecular solar thermal (MOST) energy storage is a promising means to store solar energy with on-demand energy release. The light-induced isomerization reaction of norbornadiene (NBD) to quadricyclane (QC) is of great interest because of the generally high energy storage density (0.97 MJ kg-1) and long thermal reversion lifetime (t1/2,300K = 8346 years). However, the mechanistic details of the ultrafast excited-state [2 + 2]-cycloaddition are largely unknown due to the limitations of experimental techniques in resolving accurate excited-state molecular structures. We now present a full computational study on the excited-state deactivation mechanism of NBD and its dimethyl dicyano derivative (DMDCNBD) in the gas phase. Our multiconfigurational calculations and nonadiabatic molecular dynamics simulations have enumerated the possible pathways with 557 S2 trajectories of NBD for 500 fs and 492 S1 trajectories of DMDCNBD for 800 fs. The simulations predicted the S2 and S1 lifetimes of NBD (62 and 221 fs, respectively) and the S1 lifetime of DMDCNBD (190 fs). The predicted quantum yields of QC and DCQC are 10 and 43%, respectively. Our simulations also show the mechanisms of forming other possible reaction products and their quantum yields.
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Affiliation(s)
- Federico
J. Hernández
- School
of Physical and Chemical Sciences, Queen
Mary University of London, Mile End Road, London E1 4NS, U.K.
| | - Jordan M. Cox
- Department
of Chemistry and Chemical Biology, Northeastern
University, Boston, Massachusetts 02115, United States
| | - Jingbai Li
- Hoffmann
Institute of Advanced Materials, Shenzhen
Polytechnic, 7098 Liuxian Blvd, Nanshan District, Shenzhen 518055, People’s
Republic of China
| | - Rachel Crespo-Otero
- School
of Physical and Chemical Sciences, Queen
Mary University of London, Mile End Road, London E1 4NS, U.K.
| | - Steven A. Lopez
- Department
of Chemistry and Chemical Biology, Northeastern
University, Boston, Massachusetts 02115, United States
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16
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Hu D, Huo P. Ab Initio Molecular Cavity Quantum Electrodynamics Simulations Using Machine Learning Models. J Chem Theory Comput 2023; 19:2353-2368. [PMID: 37000936 PMCID: PMC10134431 DOI: 10.1021/acs.jctc.3c00137] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Indexed: 04/03/2023]
Abstract
We present a mixed quantum-classical simulation of polariton dynamics for molecule-cavity hybrid systems. In particular, we treat the coupled electronic-photonic degrees of freedom (DOFs) as the quantum subsystem and the nuclear DOFs as the classical subsystem and use the trajectory surface hopping approach to simulate non-adiabatic dynamics among the polariton states due to the coupled motion of nuclei. We use the accurate nuclear gradient expression derived from the Pauli-Fierz quantum electrodynamics Hamiltonian without making further approximations. The energies, gradients, and derivative couplings of the molecular systems are obtained from the on-the-fly simulations at the level of complete active space self-consistent field (CASSCF), which are used to compute the polariton energies and nuclear gradients. The derivatives of dipoles are also necessary ingredients in the polariton nuclear gradient expression but are often not readily available in electronic structure methods. To address this challenge, we use a machine learning model with the Kernel ridge regression method to construct the dipoles and further obtain their derivatives, at the same level as the CASSCF theory. The cavity loss process is modeled with the Lindblad jump superoperator on the reduced density of the electronic-photonic quantum subsystem. We investigate the azomethane molecule and its photoinduced isomerization dynamics inside the cavity. Our results show the accuracy of the machine-learned dipoles and their usage in simulating polariton dynamics. Our polariton dynamics results also demonstrate the isomerization reaction of azomethane can be effectively tuned by coupling to an optical cavity and by changing the light-matter coupling strength and the cavity loss rate.
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Affiliation(s)
- Deping Hu
- Department of Chemistry, University of Rochester, Rochester, New York 14627, United States
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, Rochester, New York 14627, United States
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17
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Zhao X, Shu Y, Zhang L, Xu X, Truhlar DG. Direct Nonadiabatic Dynamics of Ammonia with Curvature-Driven Coherent Switching with Decay of Mixing and with Fewest Switches with Time Uncertainty: An Illustration of Population Leaking in Trajectory Surface Hopping Due to Frustrated Hops. J Chem Theory Comput 2023; 19:1672-1685. [PMID: 36877830 DOI: 10.1021/acs.jctc.2c01260] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
Abstract
Mixed quantum-classical nonadiabatic dynamics is a widely used approach to simulate molecular dynamics involving multiple electronic states. There are two main categories of mixed quantum-classical nonadiabatic dynamics algorithms, namely, trajectory surface hopping (TSH) in which the trajectory propagates on a single potential energy surface, interrupted by hops, and self-consistent-potential (SCP) methods, such as semiclassical Ehrenfest, in which propagation occurs on a mean-field surface without hops. In this work, we will illustrate an example of severe population leaking in TSH. We emphasize that such leaking is a combined effect of frustrated hops and long-time simulations that drive the final excited-state population toward zero as a function of time. We further show that such leaking can be alleviated-but not eliminated-by the fewest switches with time uncertainty TSH algorithm (here implemented in the SHARC program); the time uncertainty algorithm slows down the leaking process by a factor of 4.1. The population leaking is not present in coherent switching with decay of mixing (CSDM), which is an SCP method with non-Markovian decoherence included. Another result in this paper is that we find very similar results with the original CSDM algorithm, with time-derivative CSDM (tCSDM), and with curvature-driven CSDM (κCSDM). Not only do we find good agreement for electronically nonadiabatic transition probabilities but also we find good agreement of the norms of the effective nonadiabatic couplings (NACs) that are derived from the curvature-driven time-derivative couplings as implemented in κCSDM with the time-dependent norms of the nonadiabatic coupling vectors computed by state-averaged complete-active-space self-consistent field theory.
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Affiliation(s)
- Xiaorui Zhao
- Center for Combustion Energy, Tsinghua University, Beijing 100084, P. R. China.,School of Aerospace Engineering, Tsinghua University, Beijing 100084, P. R. China
| | - Yinan Shu
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Linyao Zhang
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, P. R. China
| | - Xuefei Xu
- Center for Combustion Energy, Tsinghua University, Beijing 100084, P. R. China
| | - Donald G Truhlar
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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18
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Krug SL, von Rudorff GF, von Lilienfeld OA. Relative energies without electronic perturbations via alchemical integral transform. J Chem Phys 2022; 157:164109. [DOI: 10.1063/5.0111511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We show that the energy of a perturbed system can be fully recovered from the unperturbed system’s electron density. We derive an alchemical integral transform by parametrizing space in terms of transmutations, the chain rule, and integration by parts. Within the radius of convergence, the zeroth order yields the energy expansion at all orders, restricting the textbook statement by Wigner that the p-th order wave function derivative is necessary to describe the (2 p + 1)-th energy derivative. Without the need for derivatives of the electron density, this allows us to cover entire chemical neighborhoods from just one quantum calculation instead of single systems one by one. Numerical evidence presented indicates that predictive accuracy is achieved in the range of mHa for the harmonic oscillator or the Morse potential and in the range of machine accuracy for hydrogen-like atoms. Considering isoelectronic nuclear charge variations by one proton in all multi-electron atoms from He to Ne, alchemical integral transform based estimates of the relative energy deviate by only few mHa from corresponding Hartree–Fock reference numbers.
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Affiliation(s)
- Simon León Krug
- University of Vienna, Computational Materials Physics, Kolingasse 14-16, 1090 Vienna, Austria
- Machine Learning Group, Technische Universität Berlin and Institute for the Foundations of Learning and Data, 10587 Berlin, Germany
| | - Guido Falk von Rudorff
- University of Vienna, Computational Materials Physics, Kolingasse 14-16, 1090 Vienna, Austria
- Institute for Pure and Applied Mathematics (IPAM), University of California, Los Angeles, 460 Portola Plaza, Los Angeles, California 90095, USA
| | - O. Anatole von Lilienfeld
- Machine Learning Group, Technische Universität Berlin and Institute for the Foundations of Learning and Data, 10587 Berlin, Germany
- Vector Institute for Artificial Intelligence, Toronto, Ontario, M5S 1M1, Canada
- Departments of Chemistry, Materials Science and Engineering, and Physics, University of Toronto, St. George Campus, Toronto, Ontario M5S 1A7, Canada
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19
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Nag P, Bera A, Vennapusa SR. Rapid Intersystem Crossing Induced by Ultrafast Excited-State Intramolecular Proton Transfer in 3-Mercaptopyran-4-one. J Phys Chem A 2022; 126:6407-6415. [PMID: 36069738 DOI: 10.1021/acs.jpca.2c04205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Investigation into the photoinduced processes of 3-mercaptopyran-4-one is carried out using trajectory-based surface hopping simulations. Excitation into the near-degenerate higher singlet excited states reveals rapid internal conversion (IC) into S1 on a sub-50 fs timescale. Excited-state intramolecular proton transfer (ESIPT) also takes place simultaneously with IC. We observe that following tautomerization, the molecule has multiple relaxation pathways. A channel exists for it to nonradiatively decay into the tautomer ground-state or undergo rapid intersystem crossing (ISC) into the close-lying higher triplet state, which ultimately decays into T1. The simulations show that ISC is significantly enhanced after ESIPT, which is studied by tracking the changes in energy gaps and associated spin-orbit coupling elements.
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Affiliation(s)
- Probal Nag
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Maruthamala P.O., Vithura, Thiruvananthapuram, Kerala 695551, India
| | - Anshuman Bera
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Maruthamala P.O., Vithura, Thiruvananthapuram, Kerala 695551, India
| | - Sivaranjana Reddy Vennapusa
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Maruthamala P.O., Vithura, Thiruvananthapuram, Kerala 695551, India
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20
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Rimgard BP, Tao Z, Parada GA, Cotter LF, Hammes-Schiffer S, Mayer JM, Hammarström L. Proton-coupled energy transfer in molecular triads. Science 2022; 377:742-747. [PMID: 35862490 PMCID: PMC9597948 DOI: 10.1126/science.abq5173] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
We experimentally discovered and theoretically analyzed a photochemical mechanism, which we term proton-coupled energy transfer (PCEnT). A series of anthracene-phenol-pyridine triads formed a local excited anthracene state after light excitation at a wavelength of ~400 nanometers (nm), which led to fluorescence around 550 nm from the phenol-pyridine unit. Direct excitation of phenol-pyridine would have required ~330-nm light, but the coupled proton transfer within the phenol-pyridine unit lowered its excited-state energy so that it could accept excitation energy from anthracene. Singlet-singlet energy transfer thus occurred despite the lack of spectral overlap between the anthracene fluorescence and the phenol-pyridine absorption. Moreover, theoretical calculations indicated negligible charge transfer between the anthracene and phenol-pyridine units. We construe PCEnT as an elementary reaction of possible relevance to biological systems and future photonic devices.
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Affiliation(s)
| | - Zhen Tao
- Yale University, Department of Chemistry, New Haven, Connecticut 06520, USA
| | - Giovanny A. Parada
- Yale University, Department of Chemistry, New Haven, Connecticut 06520, USA
- The College of New Jersey, Department of Chemistry, Ewing, NJ 08628, USA
| | - Laura F. Cotter
- Yale University, Department of Chemistry, New Haven, Connecticut 06520, USA
| | | | - James M. Mayer
- Yale University, Department of Chemistry, New Haven, Connecticut 06520, USA
| | - Leif Hammarström
- Uppsala University, Department of Chemistry, Ångström laboratory, Uppsala, Box 523, SE75120, Sweden
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21
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Matsubara T. Dynamic effects of the bridged structure on the quantum yield of the cis → trans photoisomerization of azobenzene. Phys Chem Chem Phys 2022; 24:17303-17313. [PMID: 35815656 DOI: 10.1039/d2cp02418g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A nonadiabatic molecular dynamics simulation was performed for the cis → trans photoisomerization of diindane diazocine to determine how its bridged structure results in the highest reported quantum yield for this isomerization. Similar to azobenzene, when diindane diazocine is excited to the S1 state, it isomerizes to the trans form by a pedal motion of the -NN- moiety passing through the S1/S0 conical intersection. However, due to the faster intramolecular vibrational energy redistribution, the excited state lifetime of diindane diazocine is shorter. The bridged structure reduces the degrees of freedom, other than those that drive the isomerization. Therefore, the kinetic energy is selectively distributed to the specific normal mode for the pedal motion of the -NN- moiety, and it is efficiently utilized for the isomerization to the trans form, which is considered a major reason for the increased isomerization yield.
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Affiliation(s)
- Toshiaki Matsubara
- Department of Chemistry, Faculty of Science, Kanagawa University, 2946, Tsuchiya, Hiratsuka, Kanagawa 259-1293, Japan.
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22
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Li J, Lopez SA. A Look Inside the Black Box of Machine Learning Photodynamics Simulations. Acc Chem Res 2022; 55:1972-1984. [PMID: 35796602 DOI: 10.1021/acs.accounts.2c00288] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
ConspectusPhotochemical reactions are of great importance in chemistry, biology, and materials science because they take advantage of a renewable energy source, mild reaction conditions, and high atom economy. Light absorption can excite molecules to a higher energy electronic state of the same spin multiplicity. The following nonadiabatic processes induce molecular transformations that afford exotic molecular architectures and high-energy-isomers that are inaccessible by thermal means. Computational simulations now complement time-resolved instrumentation to reveal ultrafast excited-state mechanistic information for photochemical reactions that is essential in disentangling elusive spectroscopic features, excited-state lifetimes, and excited-state mechanistic critical points. Nonadiabatic molecular dynamics (NAMD), powered by surface hopping techniques, is among the most widely applied techniques to model the photochemical reactions of medium-sized molecules. However, the computational efficiency is limited because of the requisite thousands of multiconfigurational quantum-chemical calculations multiplied by hundreds of trajectories. Machine learning (ML) has emerged as a revolutionary force in computational chemistry to predict the outcome of the resource-intensive multiconfigurational calculations on the fly. An ML potential trained with a substantial set of quantum-chemical calculations can predict the energies and forces with errors under chemical accuracy at a negligible cost. The integration of ML potentials in NAMD dramatically extends the maximum simulation time scale by ∼10 000-fold to the nanosecond regime.In this Account, we present a comprehensive demonstration of ML photodynamics simulations and summarize our most recent applications in resolving complex photochemical reactions. First, we address three fundamental components of ML techniques for photodynamics simulations: the quantum-chemical data set, the ML potential, and NAMD. Second, we describe best practices in building training data and our procedure toward training the ML photodynamics model with our recent literature contributions. We introduce a convenient training data generation scheme combining Wigner sampling and geometrical interpolation. It trains reliable and effective ML potentials suitable for subsequent active learning to detect undersampled data. We demonstrate how active learning automatically discovers new mechanistic pathways and reproduces experimental results. We point out that atomic permutation is an essential data augmentation approach to improve the learnability of distance-based molecular descriptors for highly symmetric molecules. Third, we demonstrate the utility of ML-photodynamics by showing the results of ML photodynamics simulations of (1) photo-torquoselective 4π disrotatory electrocyclic ring closing of norbornyl cyclohexadiene, which reveals a thermal conversion from experimentally unobserved intermediates to the reactant in 1 ns; (2) [2 + 2] photocycloaddition of substituted [3]-syn-ladderdienes in competition with 4π and 6π electrocyclic ring-opening reactions, uncovering substituent effects to explain the reported increased quantum yield of substituted cubane precursors; and (3) photochemical 4π disrotatory electrocyclic reactions of fluorobenzenes in nanoseconds with XMS-CASPT2-level training data. We expect this Account to broaden understanding of ML photodynamics and inspire future developments and applications to increasingly large molecules within complex environments on long time scales.
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Affiliation(s)
- Jingbai Li
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
| | - Steven A Lopez
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
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23
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Ulukan P, Bas EE, Ozek RB, Dal Kaynak C, Monari A, Aviyente V, Catak S. Computational descriptor analysis on excited state behaviours of a series of TADF and non-TADF compounds. Phys Chem Chem Phys 2022; 24:16167-16182. [PMID: 35748918 DOI: 10.1039/d2cp01323a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The thermally activated delayed fluorescence (TADF) behaviours of seventeen organic TADF emitters and two non-TADF chromophores bearing various donor and acceptor moieties were investigated, focusing on their torsion angles, singlet-triplet gap (ΔEST), spin orbit couplings (SOC) and topological ΦS index. Electronic structure calculations were performed in the framework of the Tamm-Dancoff approximation (TDA) allowing the possible reverse intersystem crossing (RISC) pathways to be characterized. The electronic density reorganization of the excited states was checked also with respect to the different exchange-correlation functional and absorption spectra were obtained by considering vibrational and dynamical effects through Wigner sampling of the ground state equilibrium regions. Examining all the parameters obtained in our computational study, we rationalized the influence of electron-donating and electron-accepting groups and the effects of geometrical factors, especially torsion angles, on a wide class of diverse compounds ultimately providing an easy and computationally effective protocol to assess TADF efficiencies.
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Affiliation(s)
- Pelin Ulukan
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
| | - Ekin Esme Bas
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
| | - Rengin Busra Ozek
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
| | - Cansul Dal Kaynak
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
| | - Antonio Monari
- Université de Lorraine and CNRS, LPCT UMR 7019, F-54000 Nancy, France.,Université de Paris and CNRS, Itodys, F-75006 Paris, France
| | - Viktorya Aviyente
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
| | - Saron Catak
- Department of Chemistry, Bogazici University, Bebek, 34342, Istanbul, Turkey.
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24
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Avagliano D, Lorini E, González L. Sampling effects in quantum mechanical/molecular mechanics trajectory surface hopping non-adiabatic dynamics. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2022; 380:20200381. [PMID: 35341304 PMCID: PMC8958275 DOI: 10.1098/rsta.2020.0381] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 09/01/2021] [Indexed: 05/29/2023]
Abstract
The impact of different initial conditions in non-adiabatic trajectory surface hopping dynamics within a hybrid quantum mechanical/molecular mechanics scheme is investigated. The influence of a quantum sampling, based on a Wigner distribution, a fully thermal sampling, based on classical molecular dynamics, and a quantum sampled system, but thermally equilibrated with the environment, is investigated on the relaxation dynamics of solvated fulvene after light irradiation. We find that the decay from the first singlet excited state to the ground state shows high dependency on the initial condition and simulation parameters. The three sampling methods lead to different distributions of initial geometries and momenta, which then affect the fate of the excited state dynamics. We evaluated both the effect of sampling geometries and momenta, analysing how the ultrafast decay of fulvene changes accordingly. The results are expected to be of interest to decide how to initialize non-adiabatic dynamics in the presence of the environment. This article is part of the theme issue 'Chemistry without the Born-Oppenheimer approximation'.
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Affiliation(s)
- Davide Avagliano
- Faculty of Chemistry, Institute of Theoretical Chemistry, University of Vienna, Währinger Straße 17, A-1180 Vienna, Austria
| | - Emilio Lorini
- Faculty of Chemistry, Institute of Theoretical Chemistry, University of Vienna, Währinger Straße 17, A-1180 Vienna, Austria
| | - Leticia González
- Faculty of Chemistry, Institute of Theoretical Chemistry, University of Vienna, Währinger Straße 17, A-1180 Vienna, Austria
- Vienna Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währinger Straße 17, A-1180 Vienna, Austria
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25
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Nag P, Vennapusa SR. Unraveling the sub-100 fs ESIPT in 5-hydroxychromone using surface hopping simulations. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2021.113767] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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26
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27
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Ma XR, Zhang J, Xiong YC, Zhou W. Revising the performance of the Landau–Zener surface hopping on some typical one-dimensional nonadiabatic models. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2051761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Xiang-Rui Ma
- Department of Material Physics, School of Mathematics, Physics and Optoelectronic Engineering, Hubei University of Automotive Technology, Shiyan, People's Republic of China
- Collaborative Innovation Center for Optoelectronic Technology, Hubei University of Automotive Technology, Shiyan, People's Republic of China
| | - Jun Zhang
- Department of Material Physics, School of Mathematics, Physics and Optoelectronic Engineering, Hubei University of Automotive Technology, Shiyan, People's Republic of China
- Collaborative Innovation Center for Optoelectronic Technology, Hubei University of Automotive Technology, Shiyan, People's Republic of China
| | - Yong-Chen Xiong
- Department of Material Physics, School of Mathematics, Physics and Optoelectronic Engineering, Hubei University of Automotive Technology, Shiyan, People's Republic of China
- Collaborative Innovation Center for Optoelectronic Technology, Hubei University of Automotive Technology, Shiyan, People's Republic of China
| | - Wanghuai Zhou
- Department of Material Physics, School of Mathematics, Physics and Optoelectronic Engineering, Hubei University of Automotive Technology, Shiyan, People's Republic of China
- Collaborative Innovation Center for Optoelectronic Technology, Hubei University of Automotive Technology, Shiyan, People's Republic of China
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28
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Eriksson SL, Lindale JR, Li X, Warren WS. Improving SABRE hyperpolarization with highly nonintuitive pulse sequences: Moving beyond avoided crossings to describe dynamics. SCIENCE ADVANCES 2022; 8:eabl3708. [PMID: 35294248 PMCID: PMC8926330 DOI: 10.1126/sciadv.abl3708] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 01/24/2022] [Indexed: 05/26/2023]
Abstract
Signal amplification by reversible exchange (SABRE) creates "hyperpolarization" (large spin magnetization) using a transition metal catalyst and parahydrogen, addressing the sensitivity limitations of magnetic resonance. SABRE and its heteronuclear variant X-SABRE are simple, fast, and general, but to date have not produced polarization levels as large as more established methods. We show here that the commonly used theoretical framework for these applications, which focuses on avoided crossings (also called level anticrossings or LACs), steer current SABRE and X-SABRE experiments away from optimal solutions. Accurate simulations show astonishingly rich and unexpected dynamics in SABRE/X-SABRE, which we explain with a combination of perturbation theory and average Hamiltonian approaches. This theoretical picture predicts simple pulse sequences with field values far from LACs (both instantaneously and on average) using different terms in the effective Hamiltonian to strategically control evolution and improve polarization transfer. Substantial signal enhancements under such highly nonintuitive conditions are verified experimentally.
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Affiliation(s)
- Shannon L. Eriksson
- Department of Chemistry, Duke University, Durham, NC 27708, USA
- School of Medicine, Duke University, Durham, NC 27708, USA
| | | | - Xiaoqing Li
- Department of Physics, Duke University, Durham, NC 27708, USA
| | - Warren S. Warren
- Department of Chemistry, Duke University, Durham, NC 27708, USA
- School of Medicine, Duke University, Durham, NC 27708, USA
- Department of Physics, Duke University, Durham, NC 27708, USA
- Department of Physics, Chemistry, Biomedical Engineering, and Radiology, Duke University, Durham, NC 27704, USA
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29
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Messerly RA, Gifford BJ, Holland TM. Kinetic isotope effects for dissociative recombination of tritiated ketenyl ion (3HCCO+): A surface-hopping ab initio molecular dynamics study. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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30
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Gamper J, Kluibenschedl F, Weiss AKH, Hofer TS. From vibrational spectroscopy and quantum tunnelling to periodic band structures – a self-supervised, all-purpose neural network approach to general quantum problems. Phys Chem Chem Phys 2022; 24:25191-25202. [DOI: 10.1039/d2cp03921d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
A general, feedforward neural network strategy for the treatment of a broad range of quantum problems including rotational and vibrational spectroscopy, tunnelling and band structure calculations is presented in this study.
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Affiliation(s)
- Jakob Gamper
- Theoretical Chemistry, Division, Institute of General, Inorganic and Theoretical Chemistry, Center for Chemistry and Biomedicine, University of Innsbruck, Innrain 80-82, A-6020 Innsbruck, Austria
| | - Florian Kluibenschedl
- Theoretical Chemistry, Division, Institute of General, Inorganic and Theoretical Chemistry, Center for Chemistry and Biomedicine, University of Innsbruck, Innrain 80-82, A-6020 Innsbruck, Austria
| | - Alexander K. H. Weiss
- Research Institute for Biomedical Aging Research, University of Innsbruck, Rennweg 10, A-6020 Innsbruck, Austria
| | - Thomas S. Hofer
- Theoretical Chemistry, Division, Institute of General, Inorganic and Theoretical Chemistry, Center for Chemistry and Biomedicine, University of Innsbruck, Innrain 80-82, A-6020 Innsbruck, Austria
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31
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de Castro Araujo Valente D, Borges I, Cardozo TM. Nonradiative relaxation mechanisms of the elusive silole molecule. Phys Chem Chem Phys 2021; 23:26561-26574. [PMID: 34811562 DOI: 10.1039/d1cp03803f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Silole derivatives have been extensively employed for developing organic optoelectronics, but few studies focused on the photophysical properties of the silole molecule. In this work, we investigate these properties by computing the absorption spectra and performing nonadiabatic molecular dynamics of silole employing the algebraic diagrammatic construction [ADC(2)] and extended multi-state XMS-CASPT2 ab initio electronic structure methods. For vertical excitations and excited state optimizations, the equation of motion coupled-cluster singles and doubles (EOM-CCSD) was also used. The nuclear ensemble and the fewest-switches surface hopping molecular dynamics methods coupled with the first two high-level electronic structure methods were applied to probe the relaxation mechanisms of silole. We could reproduce the experimental first absorption maximum value and found an ultrafast relaxation process occurring exclusively through ring-puckering distortions without breaking ring bonds or hydrogen elimination. Minimum energy conical intersection optimizations were carried out and potential energy curves, including triplet states, were calculated to further elucidate the relaxation process of silole.
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Affiliation(s)
| | - Itamar Borges
- Departamento de Química, Instituto Militar de Engenharia, Rio de Janeiro, RJ, Brazil
| | - Thiago Messias Cardozo
- Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
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32
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Fındık V, Fındık BK, Aviyente V, Monari A. Origins of the photoinitiation capacity of aromatic thiols as photoinitiatiors: a computational study. Phys Chem Chem Phys 2021; 23:24377-24385. [PMID: 34676839 DOI: 10.1039/d1cp04345e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, we report the photophysical properties of three thiol derivatives, commonly used as photoinitiators in thiol-ene free radical polymerization, the ultimate goal being to rationalize the main reason behind the photoinitiation efficiency. For this aim, time dependent density functional theory is used to simulate the absorption spectra of alkyl thiol (R-SH), thiophenol (PhSH) and p-(trifluoromethyl) thiophenol (p-CF3PhSH), describe their excited state topologies, and explore their potential energy surfaces along the S-H dissociation. Excited state calculations have shown that the S-H photolysis is achieved through the triplet excited states following intersystem crossing from the originally populated singlet manifolds. More specifically, while in aromatic thiol derivatives dissociation is mainly triplet-state mediated, the first excited singlet state and first triplet state of alkyl thiol are both dissociative and hence potentially capable of generating the photoinduced radical species. We have also justified the experimental findings concerning the photoinitiator efficiency considering both their potential energy surface topologies and the absorption intensity, in the lowest energy region.
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Affiliation(s)
- Volkan Fındık
- Univesité de Lorraine, CNRS, LPCT, F54000 Nancy, France. .,Department of Chemistry, Faculty of Arts and Sciences, Marmara University, 34722 Istanbul, Turkey
| | - Basak Koca Fındık
- Department of Chemistry, Bogazici University, 34342, Bebek, Istanbul, Turkey
| | - Viktorya Aviyente
- Department of Chemistry, Bogazici University, 34342, Bebek, Istanbul, Turkey
| | - Antonio Monari
- Univesité de Lorraine, CNRS, LPCT, F54000 Nancy, France. .,Université de Paris and CNRS, ITODYS, F-75006, Paris, France.
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33
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M J C, Nag P, Vennapusa SR. Surface hopping dynamics reveal ultrafast triplet generation promoted by S 1-T 2-T 1 spin-vibronic coupling in 2-mercaptobenzothiazole. Phys Chem Chem Phys 2021; 23:20183-20192. [PMID: 34473155 DOI: 10.1039/d1cp02587b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate the T1 formation upon populating the optically "bright" S2 in 2-mercaptobenzothiazole to interpret the underlying relaxation pathways associated with the experimental decay constants reported by D. Koyama and A. J. Orr-Ewing, Phys. Chem. Chem. Phys., 2016, 18, 26224-26235. Energetics, electronic populations and geometries of various stationary points of low-lying electronic states are computed using the semi-classical ab initio surface hopping dynamics simulations. Estimated decay constants of S2-S1 internal conversion (IC) and S1-T2 intersystem crossing (ISC) are in excellent agreement with the experiment. The observed ultrafast ISC is analyzed based on the S1-T2-T1 spin-vibronic coupling mechanism. In contrast to the previous assignment of 6 ps to the T2-T1 IC, our findings enable us to attribute this decay constant to the combined events of T2-T1 IC followed by relaxation of vibrationally hot T1.
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Affiliation(s)
- Chithra M J
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER TVM), Maruthamala PO, Vithura, Thiruvananthapuram 695551, Kerala, India.
| | - Probal Nag
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER TVM), Maruthamala PO, Vithura, Thiruvananthapuram 695551, Kerala, India.
| | - Sivaranjana Reddy Vennapusa
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER TVM), Maruthamala PO, Vithura, Thiruvananthapuram 695551, Kerala, India.
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34
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Nag P, Anand N, Vennapusa SR. Ultrafast nonadiabatic excited-state intramolecular proton transfer in 3-hydroxychromone: A surface hopping approach. J Chem Phys 2021; 155:094301. [PMID: 34496583 DOI: 10.1063/5.0060934] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We employ the ab initio molecular dynamics within the surface hopping method to explore the excited-state intramolecular proton transfer taking place on the coupled "bright" S1 (ππ*) and "dark" S2 (nπ*) states of 3-hydroxychromone. The nonadiabatic population transfer between these states via an accessible conical intersection would open up multiple proton transfer pathways. Our findings reveal the keto tautomer formation via S1 on a timescale similar to the O-H in-plane vibrational period (<100 fs). Structural analysis indicates that a few parameters of the five-membered proton transfer geometry that constitute the donor (hydroxyl) and acceptor (carbonyl) groups would be adequate to drive the enol to keto transformation. We also investigate the role of O-H in-plane and out-of-plane vibrational motions in the excited-state dynamics of 3-hydroxychromone.
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Affiliation(s)
- Probal Nag
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Maruthamala PO, Vithura, Thiruvananthapuram 695551, India
| | - Neethu Anand
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Maruthamala PO, Vithura, Thiruvananthapuram 695551, India
| | - Sivaranjana Reddy Vennapusa
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Maruthamala PO, Vithura, Thiruvananthapuram 695551, India
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35
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Weight BM, Mandal A, Huo P. Ab initio symmetric quasi-classical approach to investigate molecular Tully models. J Chem Phys 2021; 155:084106. [PMID: 34470343 DOI: 10.1063/5.0061934] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We perform on-the-fly non-adiabatic molecular dynamics simulations using the symmetrical quasi-classical (SQC) approach with the recently suggested molecular Tully models: ethylene and fulvene. We attempt to provide benchmarks of the SQC methods using both the square and triangle windowing schemes as well as the recently proposed electronic zero-point-energy correction scheme (the so-called γ correction). We use the quasi-diabatic propagation scheme to directly interface the diabatic SQC methods with adiabatic electronic structure calculations. Our results showcase the drastic improvement of the accuracy by using the trajectory-adjusted γ-corrections, which outperform the widely used trajectory surface hopping method with decoherence corrections. These calculations provide useful and non-trivial tests to systematically investigate the numerical performance of various diabatic quantum dynamics approaches, going beyond simple diabatic model systems that have been used as the major workhorse in the quantum dynamics field. At the same time, these available benchmark studies will also likely foster the development of new quantum dynamics approaches based on these techniques.
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Affiliation(s)
- Braden M Weight
- Department of Physics and Astronomy, University of Rochester, Rochester, New York 14627, USA
| | - Arkajit Mandal
- Department of Chemistry, University of Rochester, Rochester, New York 14627, USA
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, Rochester, New York 14627, USA
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36
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Wernbacher AM, González L. The importance of finite temperature and vibrational sampling in the absorption spectrum of a nitro-functionalized Ru(ii) water oxidation catalyst. Phys Chem Chem Phys 2021; 23:17724-17733. [PMID: 34378587 PMCID: PMC8371993 DOI: 10.1039/d1cp02748d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Accepted: 07/31/2021] [Indexed: 01/14/2023]
Abstract
Consideration of finite temperature and vibrational motion can be an essential component for accurate simulations of absorption spectra. Here we use finite-temperature Wigner phase-space sampling to investigate the intense absorption of the water oxidation catalyst Ru(dppip-NO2) in the visible (vis) region. The influence of vibrational and torsional motions as well as temperature effects are addressed for the different protonation forms of the pH-sensitive dppip-NO2 ligand of the catalyst. Excitations to the nitrophenyl group and π-system of dppip-NO2, which characterize the absorption band in the equilibrium spectra, experience energy shifts and a significant decrease in oscillator strength when nuclear motion is considered. The importance of excitations to the nitrophenyl group for the vis band is reduced in the spectra computed from the 300 K ensembles, which feature broad distributions of the corresponding dihedral angles. The effects of vibrational sampling on the absorption spectra may be attributed to nitrophenyl and, in particular, to NO2 torsional motions. We expect finite temperature and vibrational sampling to be important for simulating the absorption spectra of other transition metal complexes with flexible ligands or nitro-aromatic motifs.
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Affiliation(s)
- Anna M. Wernbacher
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna1090 ViennaWähringer Straße 17Austria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna1090 ViennaWähringer Straße 17Austria
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37
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Scutelnic V, Tsuru S, Pápai M, Yang Z, Epshtein M, Xue T, Haugen E, Kobayashi Y, Krylov AI, Møller KB, Coriani S, Leone SR. X-ray transient absorption reveals the 1A u (nπ*) state of pyrazine in electronic relaxation. Nat Commun 2021; 12:5003. [PMID: 34408141 PMCID: PMC8373973 DOI: 10.1038/s41467-021-25045-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 07/21/2021] [Indexed: 11/09/2022] Open
Abstract
Electronic relaxation in organic chromophores often proceeds via states not directly accessible by photoexcitation. We report on the photoinduced dynamics of pyrazine that involves such states, excited by a 267 nm laser and probed with X-ray transient absorption spectroscopy in a table-top setup. In addition to the previously characterized 1B2u (ππ*) (S2) and 1B3u (nπ*) (S1) states, the participation of the optically dark 1Au (nπ*) state is assigned by a combination of experimental X-ray core-to-valence spectroscopy, electronic structure calculations, nonadiabatic dynamics simulations, and X-ray spectral computations. Despite 1Au (nπ*) and 1B3u (nπ*) states having similar energies at relaxed geometry, their X-ray absorption spectra differ largely in transition energy and oscillator strength. The 1Au (nπ*) state is populated in 200 ± 50 femtoseconds after electronic excitation and plays a key role in the relaxation of pyrazine to the ground state.
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Affiliation(s)
- Valeriu Scutelnic
- Department of Chemistry, University of California, Berkeley, CA, USA
| | - Shota Tsuru
- DTU Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark.,Ruhr-Universität, Bochum, Germany
| | - Mátyás Pápai
- DTU Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark.,Wigner Research Centre for Physics, Budapest, Hungary
| | - Zheyue Yang
- Department of Chemistry, University of California, Berkeley, CA, USA.,, Shanghai, China
| | - Michael Epshtein
- Department of Chemistry, University of California, Berkeley, CA, USA.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.,, Beer-Sheva, Israel
| | - Tian Xue
- Department of Chemistry, University of California, Berkeley, CA, USA
| | - Eric Haugen
- Department of Chemistry, University of California, Berkeley, CA, USA.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Yuki Kobayashi
- Department of Chemistry, University of California, Berkeley, CA, USA.,Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Anna I Krylov
- Department of Chemistry, University of Southern California, Los Angeles, CA, USA
| | - Klaus B Møller
- DTU Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Sonia Coriani
- DTU Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Stephen R Leone
- Department of Chemistry, University of California, Berkeley, CA, USA. .,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. .,Department of Physics, University of California, Berkeley, CA, USA.
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38
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Avagliano D, Bonfanti M, Garavelli M, González L. QM/MM Nonadiabatic Dynamics: the SHARC/COBRAMM Approach. J Chem Theory Comput 2021; 17:4639-4647. [PMID: 34114454 DOI: 10.1021/acs.jctc.1c00318] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present the SHARC/COBRAMM approach to enable easy and efficient excited-state dynamics simulations at different levels of electronic structure theory in the presence of complex environments using a quantum mechanics/molecular mechanics (QM/MM) setup. SHARC is a trajectory surface-hoping method that can incorporate the simultaneous effects of nonadiabatic and spin-orbit couplings in the excited-state dynamics of molecular systems. COBRAMM allows ground- and excited-state QM/MM calculations using a subtractive scheme, with electrostatic embedding and a hydrogen link-atom approach. The combination of both free and open-source program packages provides a modular and extensive framework to model nonadiabatic processes after light irradiation from the atomistic scale to the nano-scale. As an example, the relaxation of acrolein from S1 to T1 in solution is provided.
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Affiliation(s)
- Davide Avagliano
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1180 Vienna, Austria
| | - Matteo Bonfanti
- Dipartimento di Chimica Industriale "Toso Montanari", Università degli Studi di Bologna, Viale Del Risorgimento, 4, I-40136 Bologna, Italy
| | - Marco Garavelli
- Dipartimento di Chimica Industriale "Toso Montanari", Università degli Studi di Bologna, Viale Del Risorgimento, 4, I-40136 Bologna, Italy
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1180 Vienna, Austria.,Vienna Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währinger Straße 17, A-1180 Vienna, Austria
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39
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Yong H, Moreno Carrascosa A, Ma L, Stankus B, Minitti MP, Kirrander A, Weber PM. Determination of excited state molecular structures from time-resolved gas-phase X-ray scattering. Faraday Discuss 2021; 228:104-122. [PMID: 33595043 DOI: 10.1039/d0fd00118j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a comprehensive investigation of a recently introduced method to determine transient structures of molecules in excited electronic states with sub-ångstrom resolution from time-resolved gas-phase scattering signals. The method, which is examined using time-resolved X-ray scattering data measured on the molecule N-methylmorpholine (NMM) at the Linac Coherent Light Source (LCLS), compares the experimentally measured scattering patterns against the simulated patterns corresponding to a large pool of molecular structures to determine the full set of structural parameters. In addition, we examine the influence of vibrational state distributions and find the effect negligible within the current experimental detection limits, despite that the molecules have a comparatively high internal vibrational energy. The excited state structures determined using three structure pools generated using three different computational methods are in good agreement, demonstrating that the procedure is largely independent of the computational chemistry method employed as long as the pool is sufficiently expansive in the vicinity of the sought structure and dense enough to yield good matches to the experimental patterns.
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Affiliation(s)
- Haiwang Yong
- Brown University, Department of Chemistry, Providence, Rhode Island 02912, USA.
| | | | - Lingyu Ma
- Brown University, Department of Chemistry, Providence, Rhode Island 02912, USA.
| | - Brian Stankus
- Department of Chemistry and Biochemistry, Western Connecticut State University, Danbury, Connecticut 06810, USA
| | - Michael P Minitti
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Adam Kirrander
- Brown University, Department of Chemistry, Providence, Rhode Island 02912, USA. and EaStCHEM School of Chemistry and Centre for Science at Extreme Conditions, University of Edinburgh, David Brewster Road, Edinburgh EH9 3FJ, UK
| | - Peter M Weber
- Brown University, Department of Chemistry, Providence, Rhode Island 02912, USA.
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40
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Crippa G, Faccialà D, Prasannan Geetha P, Pusala A, Musheghyan M, Assion A, Bonanomi M, Cinquanta E, Ciriolo AG, Devetta M, Fazzi D, Gatto L, De Silvestri S, Vozzi C, Stagira S. Time-domain spectroscopy of methane excited by resonant high-energy mid-IR pulses. JPHYS PHOTONICS 2021. [DOI: 10.1088/2515-7647/ac0d0e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Abstract
We describe the implementation of nonlinear time-domain spectroscopy of rotovibrational IR-active modes in methane through broadband Four-Wave Mixing driven by resonant high-energy mid infrared laser pulses. At high driving pulse intensities we observe an efficient vibrational ladder climbing triggered in the molecules. This study opens the possibility to impulsively and selectively excite molecules of biological interest to high-lying vibrational states and to characterize their dynamics.
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41
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Yong H, Xu X, Ruddock JM, Stankus B, Carrascosa AM, Zotev N, Bellshaw D, Du W, Goff N, Chang Y, Boutet S, Carbajo S, Koglin JE, Liang M, Robinson JS, Kirrander A, Minitti MP, Weber PM. Ultrafast X-ray scattering offers a structural view of excited-state charge transfer. Proc Natl Acad Sci U S A 2021; 118:e2021714118. [PMID: 33947814 PMCID: PMC8126834 DOI: 10.1073/pnas.2021714118] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Intramolecular charge transfer and the associated changes in molecular structure in N,N'-dimethylpiperazine are tracked using femtosecond gas-phase X-ray scattering. The molecules are optically excited to the 3p state at 200 nm. Following rapid relaxation to the 3s state, distinct charge-localized and charge-delocalized species related by charge transfer are observed. The experiment determines the molecular structure of the two species, with the redistribution of electron density accounted for by a scattering correction factor. The initially dominant charge-localized state has a weakened carbon-carbon bond and reorients one methyl group compared with the ground state. Subsequent charge transfer to the charge-delocalized state elongates the carbon-carbon bond further, creating an extended 1.634 Å bond, and also reorients the second methyl group. At the same time, the bond lengths between the nitrogen and the ring-carbon atoms contract from an average of 1.505 to 1.465 Å. The experiment determines the overall charge transfer time constant for approaching the equilibrium between charge-localized and charge-delocalized species to 3.0 ps.
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Affiliation(s)
- Haiwang Yong
- Department of Chemistry, Brown University, Providence, RI 02912
| | - Xuan Xu
- Department of Chemistry, Brown University, Providence, RI 02912
| | | | - Brian Stankus
- Department of Chemistry and Biochemistry, Western Connecticut State University, Danbury, CT 06810
| | | | - Nikola Zotev
- EaStCHEM, School of Chemistry, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
- Center for Science at Extreme Conditions, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
| | - Darren Bellshaw
- EaStCHEM, School of Chemistry, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
- Center for Science at Extreme Conditions, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
| | - Wenpeng Du
- Department of Chemistry, Brown University, Providence, RI 02912
| | - Nathan Goff
- Department of Chemistry, Brown University, Providence, RI 02912
| | - Yu Chang
- Department of Chemistry, Brown University, Providence, RI 02912
| | - Sébastien Boutet
- Linac Coherent Light Source, Stanford Linear Accelerator Center National Accelerator Laboratory, Menlo Park, CA 94025
| | - Sergio Carbajo
- Linac Coherent Light Source, Stanford Linear Accelerator Center National Accelerator Laboratory, Menlo Park, CA 94025
| | - Jason E Koglin
- Linac Coherent Light Source, Stanford Linear Accelerator Center National Accelerator Laboratory, Menlo Park, CA 94025
| | - Mengning Liang
- Linac Coherent Light Source, Stanford Linear Accelerator Center National Accelerator Laboratory, Menlo Park, CA 94025
| | - Joseph S Robinson
- Linac Coherent Light Source, Stanford Linear Accelerator Center National Accelerator Laboratory, Menlo Park, CA 94025
| | - Adam Kirrander
- EaStCHEM, School of Chemistry, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom;
- Center for Science at Extreme Conditions, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
| | - Michael P Minitti
- Linac Coherent Light Source, Stanford Linear Accelerator Center National Accelerator Laboratory, Menlo Park, CA 94025
| | - Peter M Weber
- Department of Chemistry, Brown University, Providence, RI 02912;
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42
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Rott F, Reduzzi M, Schnappinger T, Kobayashi Y, Chang KF, Timmers H, Neumark DM, de Vivie-Riedle R, Leone SR. Ultrafast strong-field dissociation of vinyl bromide: An attosecond transient absorption spectroscopy and non-adiabatic molecular dynamics study. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2021; 8:034104. [PMID: 34169117 PMCID: PMC8208825 DOI: 10.1063/4.0000102] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 05/24/2021] [Indexed: 06/13/2023]
Abstract
Attosecond extreme ultraviolet (XUV) and soft x-ray sources provide powerful new tools for studying ultrafast molecular dynamics with atomic, state, and charge specificity. In this report, we employ attosecond transient absorption spectroscopy (ATAS) to follow strong-field-initiated dynamics in vinyl bromide. Probing the Br M edge allows one to assess the competing processes in neutral and ionized molecular species. Using ab initio non-adiabatic molecular dynamics, we simulate the neutral and cationic dynamics resulting from the interaction of the molecule with the strong field. Based on the dynamics results, the corresponding time-dependent XUV transient absorption spectra are calculated by applying high-level multi-reference methods. The state-resolved analysis obtained through the simulated dynamics and related spectral contributions enables a detailed and quantitative comparison with the experimental data. The main outcome of the interaction with the strong field is unambiguously the population of the first three cationic states, D 1, D 2, and D 3. The first two show exclusively vibrational dynamics while the D 3 state is characterized by an ultrafast dissociation of the molecule via C-Br bond rupture within 100 fs in 50% of the analyzed trajectories. The combination of the three simulated ionic transient absorption spectra is in excellent agreement with the experimental results. This work establishes ATAS in combination with high-level multi-reference simulations as a spectroscopic technique capable of resolving coupled non-adiabatic electronic-nuclear dynamics in photoexcited molecules with sub-femtosecond resolution.
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Affiliation(s)
- Florian Rott
- Department of Chemistry, LMU Munich, 81377 Munich, Germany
| | - Maurizio Reduzzi
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | | | - Yuki Kobayashi
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Kristina F. Chang
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Henry Timmers
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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43
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Al-Mamun M, Orlowski M. Electron tunneling between vibrating atoms in a copper nano-filament. Sci Rep 2021; 11:7413. [PMID: 33795732 PMCID: PMC8016960 DOI: 10.1038/s41598-021-86603-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Accepted: 03/17/2021] [Indexed: 11/08/2022] Open
Abstract
Nanowires, atomic point contacts, and chains of atoms are one-dimensional nanostructures, which display size-dependent quantum effects in electrical and thermal conductivity. In this work a Cu nanofilament of a defined resistance and formed between a Cu and Pt electrode is heated remotely in a controlled way. Depending on the robustness of the conductive filament and the amount of heat transferred several resistance-changing effects are observed. In case of sufficiently fragile nanofilament exhibiting electrical quantum conductance effects and moderate heating applied to it, a dramatic increase of resistance is observed just after the completion of the heating cycle. However, when the filament is allowed to cool off, a spontaneous restoration of the originally set resistance of the filament is observed within less than couple tens of seconds. When the filament is sufficiently fragile or the heating too excessive, the filament is permanently ruptured, resulting in a high resistance of the cell. In contrast, for robust, low resistance filaments, the remote heating does not affect the resistance. The spontaneous restoration of the initial resistance value is explained by electron tunneling between neighboring vibrating Cu atoms. As the vibrations of the Cu atoms subside during the cooling off period, the electron tunneling between the Cu atoms becomes more likely. At elevated temperatures, the average tunneling distance increases, leading to a sharp decrease of the tunneling probability and, consequently, to a sharp increase in transient resistance.
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Affiliation(s)
- Mohammad Al-Mamun
- Bradley Department of Electrical and Computer Engineering, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Marius Orlowski
- Bradley Department of Electrical and Computer Engineering, Virginia Tech, Blacksburg, VA, 24061, USA.
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44
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Arpin PC, Turner DB. Signatures of Vibrational and Electronic Quantum Beats in Femtosecond Coherence Spectra. J Phys Chem A 2021; 125:2425-2435. [PMID: 33724844 PMCID: PMC8023717 DOI: 10.1021/acs.jpca.0c10807] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Indexed: 11/29/2022]
Abstract
Femtosecond laser pulses can produce oscillatory signals in transient-absorption spectroscopy measurements. The quantum beats are often studied using femtosecond coherence spectra (FCS), the Fourier domain amplitude, and phase profiles at individual oscillation frequencies. In principle, one can identify the mechanism that gives rise to each quantum-beat signal by comparing its measured FCS to those arising from microscopic models. To date, however, most measured FCS deviate from the ubiquitous harmonic oscillator model. Here, we expand the inventory of models to which the measured spectra can be compared. We develop quantum-mechanical models of the fundamental, overtone, and combination-band FCS arising from harmonic potentials, the FCS of anharmonic potentials, and the FCS of a purely electronic dimer. This work solidifies the use of FCS for identifying electronic coherences that can arise in measurements of molecular aggregates including photosynthetic proteins. Furthermore, future studies can use the derived expressions to fit the measured FCS and thereby extract microscopic parameters of molecular potential-energy surfaces.
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Affiliation(s)
- Paul C. Arpin
- Department
of Physics, California State University,
Chico, Chico, California 95929, United States
| | - Daniel B. Turner
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
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Hu Y, Yue L, Gu FL, Zhu C. Photoisomerization-mechanism-associated excited-state hydrogen transfer in 2'-hydroxychalcone revealed by on-the-fly trajectory surface-hopping molecular dynamics simulation. Phys Chem Chem Phys 2021; 23:4300-4310. [PMID: 33587072 DOI: 10.1039/d0cp06668k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
By performing global-switching on-the-fly trajectory surface-hopping molecular dynamics simulation at the OM2/MRCI (14,15) quantum level, we probed the S3(ππ*) photoisomerization mechanisms associated with excited-state intramolecular hydrogen transfer for 2'-hydroxychalcone (2HC) within the interwoven conical intersection networks from four singlet electronic states (S3, S2, S1, and S0). The simulated quantum yields of 0.03 for cis-to-trans and zero for trans-to-cis photoisomerization were due to almost all the conical intersections being localized either in the cis-2HC or in trans-2HC region, and there was little chance for sampling trajectories to reach the rotation conical intersection (S1/S0) in between cis-2HC and trans-2HC that is key for reactive isomerization. The potential energy well on the S1 state in the trans-2HC region prevents trajectories from trans-to-cis photoisomerization, while the fact there is no well on S1 state in cis-2HC region opens a few chances for trajectories to reach the rotation conical intersections. The present simulation found that excited-state intramolecular hydrogen transfers in 2HC have a negative impact for reactive isomerization, and that hydrogen transfers take place on the S1 state, while back-transfer on the S0 state prevents sampling trajectories reaching rotational conical intersections. It was realized that it could be possible to enhance the quantum yield of 2HC photoisomerization by suppressing the hydrogen transfer (such as by changing an electron-donating substitution or adjusting the substitution position to decrease the acidity of the phenol group). From a perspective view of the potential energy surfaces, the theoretical design of such 2HC derivatives could enhance (control) the quantum yield by shifting the conical intersections away from the cis- and trans-region.
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Affiliation(s)
- Ying Hu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education; School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China.
| | - Ling Yue
- Key Laboratory for Non-Equilibrium Synthesis and Modulation of Condensed Matter, Ministry of Education, School of Chemistry, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Feng Long Gu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education; School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China.
| | - Chaoyuan Zhu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education; School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China. and Department of Applied Chemistry and Institute of Molecular Science, National Chiao-Tung University, Hsinchu 30010, Taiwan. and Department of Applied Chemistry and Center for Emergent Functional Matter Science, National Yang Ming Chiao Tung University, Hsinchu 30010, Taiwan
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Gabriel JP, Tress M, Kossack W, Popp L, Kremer F. Molecular heterogeneities in the thermal expansivity of polyalcohols. J Chem Phys 2021; 154:024503. [PMID: 33445918 DOI: 10.1063/5.0036067] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Density is the key quantity for nearly all the numerous theories of the (dynamic) glass transition of supercooled liquids and melts. As mean field quantity, it is used to describe correlations and heterogeneities between regions consisting of several molecules. In contrast, the question how density is created by the interactions (i.e., bonds) within a molecule and to its nearest neighbors is almost unexplored. To investigate this for the example of a homologous series of polyalcohols (glycerol, threitol, xylitol, and sorbitol), Fourier-Transform InfraRed (FTIR) spectroscopy is carried out in a wide range of temperatures from far above to far below the calorimetric glass transition Tg. This enables us to determine the potentials and hence the bond lengths of specific intramolecular and intermolecular interactions. While the former has an expansion coefficient of (∼0.1 pm/100 K) with only smooth changes, the latter shows a 30-40 times stronger response with pronounced kinks at Tg. A comparison with the overall expansion based on mass density reveals that one has to separate between strong (OH⋅⋅⋅O) and weak (CH⋅⋅⋅O) intermolecular hydrogen (H)-bridges. Despite the fact that the latter dominates glassy dynamics, their expansivity is 5 times smaller than that of the weak H-bridges. It is to be expected that such heterogeneities on intramolecular and intermolecular scales are a general phenomenon in liquids and glassy systems demonstrating especially the necessity of atomistic simulations.
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Affiliation(s)
- Jan Philipp Gabriel
- Peter Debye Institute for Soft Matter Research, Leipzig University, 04103 Leipzig, Germany
| | - Martin Tress
- Peter Debye Institute for Soft Matter Research, Leipzig University, 04103 Leipzig, Germany
| | - Wilhelm Kossack
- Peter Debye Institute for Soft Matter Research, Leipzig University, 04103 Leipzig, Germany
| | - Ludwig Popp
- Peter Debye Institute for Soft Matter Research, Leipzig University, 04103 Leipzig, Germany
| | - Friedrich Kremer
- Peter Debye Institute for Soft Matter Research, Leipzig University, 04103 Leipzig, Germany
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Hu Y, Xu C, Ye L, Gu FL, Zhu C. Nonadiabatic molecular dynamics simulation for the ultrafast photoisomerization of dMe-OMe-NAIP based on TDDFT on-the-fly potential energy surfaces. Phys Chem Chem Phys 2021; 23:5236-5243. [PMID: 33629668 DOI: 10.1039/d0cp06104b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Global switching on-the-fly trajectory surface hopping molecular dynamics simulation was performed on the accurate TD-B3LYP/6-31G* potential energy surfaces for E-to-Z and Z-to-E photoisomerization of dMe-OMe-NAIP up to S1(ππ*) excitation. The present TD(DFT) simulation provides accurate calculation for conical intersections between the first-excited and ground states. Thus, simulated quantum yield and lifetime of 0.23 and 620 fs (0.15 and 600 fs) for E-to-Z (Z-to-E) isomerization are in good (relatively good) agreement with experimental observation of 0.25 and 480 fs (0.24 and 430 fs), respectively. Simulated results reveal that photoisomerization pathways are initially uphill to conical intersection zones on the S1 potential energy surface and then downhill to product zones. Three types of representative conical intersections are found for determining photoisomerization mechanisms: one is the rotation type responsible for reactive isomerization and the other two are close to E and Z configurations, respectively, only for nonreactive isomerization. The present conclusions can be held in general for similar large NAIP systems of photoinduced isomerization based on E and Z configurations.
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Affiliation(s)
- Ying Hu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education, School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China.
| | - Chao Xu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education, School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China.
| | - Linfeng Ye
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education, School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China. and Qingdao Institute for Theoretical and Computational Sciences, Shandong University, Qingdao 266237, P. R. China
| | - Feng Long Gu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education, School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China.
| | - Chaoyuan Zhu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education, School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China. and Department of Applied Chemistry and Institute of Molecular Science, National Chiao-Tung University, Hsinchu 30010, Taiwan. and Department of Applied Chemistry and Center for Emergent Functional Matter Science, National Yang Ming Chiao Tung University, Hsinchu 30010, Taiwan
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Goings JJ, Hammes-Schiffer S. Nonequilibrium Dynamics of Proton-Coupled Electron Transfer in Proton Wires: Concerted but Asynchronous Mechanisms. ACS CENTRAL SCIENCE 2020; 6:1594-1601. [PMID: 32999935 PMCID: PMC7517869 DOI: 10.1021/acscentsci.0c00756] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Indexed: 05/29/2023]
Abstract
The coupling between electrons and protons and the long-range transport of protons play important roles throughout biology. Biomimetic systems derived from benzimidazole-phenol (BIP) constructs have been designed to undergo proton-coupled electron transfer (PCET) upon electrochemical or photochemical oxidation. Moreover, these systems can transport protons along hydrogen-bonded networks or proton wires through multiproton PCET. Herein, the nonequilibrium dynamics of both single and double proton transfer in BIP molecules initiated by oxidation are investigated with first-principles molecular dynamics simulations. Although these processes are concerted in that no thermodynamically stable intermediate is observed, the simulations predict that they are predominantly asynchronous on the ultrafast time scale. For both systems, the first proton transfer typically occurs ∼100 fs after electron transfer. For the double proton transfer system, typically the second proton transfer occurs hundreds of femtoseconds after the initial proton transfer. A machine learning algorithm was used to identify the key molecular vibrational modes essential for proton transfer: a slow, in-plane bending mode that dominates the overall inner-sphere reorganization, the proton donor-acceptor motion that leads to vibrational coherence, and the faster donor-hydrogen stretching mode. The asynchronous double proton transfer mechanism can be understood in terms of a significant mode corresponding to the two anticorrelated proton donor-acceptor motions, typically decreasing only one donor-acceptor distance at a time. Although these PCET processes appear concerted on the time scale of typical electrochemical experiments, attaching these BIP constructs to photosensitizers may enable the detection of the asynchronicity of the electron and multiple proton transfers with ultrafast two-dimensional spectroscopy. Understanding the fundamental PCET mechanisms at this level will guide the design of PCET systems for catalysis and energy conversion processes.
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Affiliation(s)
- Joshua J. Goings
- Department of Chemistry, Yale University, 225
Prospect Street, New Haven, Connecticut 06520, United States
| | - Sharon Hammes-Schiffer
- Department of Chemistry, Yale University, 225
Prospect Street, New Haven, Connecticut 06520, United States
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Sayfutyarova ER, Hammes-Schiffer S. Excited State Molecular Dynamics of Photoinduced Proton-Coupled Electron Transfer in Anthracene-Phenol-Pyridine Triads. J Phys Chem Lett 2020; 11:7109-7115. [PMID: 32787327 DOI: 10.1021/acs.jpclett.0c02012] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Photoinduced proton-coupled electron transfer (PCET) in anthracene-phenol-pyridine triads exhibits inverted region behavior, where the more thermodynamically favorable process is slower. The long-lived transient charge-separated state (CSS) associated with electron transfer from phenol to anthracene and inverted region behavior were only observed experimentally for certain triads. Herein, excited state molecular dynamics simulations were performed on four different triads to simulate the nonequilibrium dynamics following photoexcitation to the locally excited state (LES) of anthracene. These simulations identified two distinct PCET pathways: the triads exhibiting inverted region behavior transitioned from the LES to the CSS, whereas the other triads transitioned to a local electron-proton transfer (LEPT) state within phenol and pyridine. The simulations suggest that PCET to the LEPT state is slower than PCET to the CSS and provides an alternative relaxation pathway. The mechanistic pathways, as well as the time scales of the electron and proton transfers, can be controlled by tuning the substituents.
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Affiliation(s)
- Elvira R Sayfutyarova
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Sharon Hammes-Schiffer
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
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