Bimolecular annihilation reactions with immobile reactants

Biophysical assay for tethered signaling reactions reveals tether-controlled activity for the phosphatase SHP-1

Tethered enzymatic reactions are ubiquitous in signaling networks but are poorly understood. A previously unreported mathematical analysis is established for tethered signaling reactions in surface plasmon resonance (SPR). Applying the method to the phosphatase SHP-1 interacting with a phosphorylated tether corresponding to an immune receptor cytoplasmic tail provides five biophysical/biochemical constants from a single SPR experiment: two binding rates, two catalytic rates, and a reach parameter. Tether binding increases the activity of SHP-1 by 900-fold through a binding-induced allosteric activation (20-fold) and a more significant increase in local substrate concentration (45-fold). The reach parameter indicates that this local substrate concentration is exquisitely sensitive to receptor clustering. We further show that truncation of the tether leads not only to a lower reach but also to lower binding and catalysis. This work establishes a new framework for studying tethered signaling processes and highlights the tether as a control parameter in clustered receptor signaling.

Nonlinear reactive systems on a lattice viewed as Boolean dynamical systems

We present a stochastic, time-discrete Boolean model that mimics the mesoscopic dynamics of the desorption reactions A+A-->A+S and A+A-->S+S in a one-dimensional lattice. In the continuous-time limit, we derive a hierarchy of dynamical equations for the subset of moments involving contiguous lattice sites. The solution of the hierarchy allows to compute the exact dynamics of the mean coverage for both microscopic and coarse-grained initial conditions, which turn out to be different from the mean field predictions. The evolution equations for the mean coverage and the second-order moments are shown to be equivalent to those provided by a time-continuous master equation. The important role of higher-order fluctuations is brought out by the failure of a truncation scheme retaining only two-particle fluctuation correlations.

Static A+B-->0 annihilation process in arbitrary dimension

The pair annihilation A+B-->0 of static particles distributed at random in a d-dimensional space is studied in the large time regime for a tunneling law. The consequences of a superposition approximation used to close the hierarchy of equations describing the process are analytically explored. It is shown that the density and pair correlations of surviving particles have scaling expressions which display the ordering and clustering effects.