1
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Intermolecular interaction study of Ag-amino acid biomolecular complex using vibrational spectroscopic techniques and density functional theory method. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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2
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Pichugina DA, Kuz'menko NE, Shestakov AF. Ligand-protected gold clusters: the structure, synthesis and applications. RUSSIAN CHEMICAL REVIEWS 2015. [DOI: 10.1070/rcr4493] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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3
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Zhang M, Zhang J, Gu T, Zhang H, Luo Y, Cao W. First-Principles Investigations of Chirality in Trimetallic Alloy Clusters: AlMnAun (n = 1–7). J Phys Chem A 2015; 119:3458-70. [DOI: 10.1021/jp511575y] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Meng Zhang
- Department
of Physics, East China University of Science and Technology, Shanghai 200237, China
| | - Jianfei Zhang
- Department
of Physics, East China University of Science and Technology, Shanghai 200237, China
| | - Teng Gu
- Department
of Physics, State Key Laboratory of Surface Physics and Advanced Materials
Laboratory, Fudan University, Shanghai 200433, China
| | - Hongyu Zhang
- Department
of Physics, East China University of Science and Technology, Shanghai 200237, China
| | - Youhua Luo
- Department
of Physics, East China University of Science and Technology, Shanghai 200237, China
| | - Wei Cao
- Department
of Physics, University of Oulu, P.O. Box 3000, Oulu FIN-90014, Finland
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4
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Baishya S, Deka RC. Exploring structures, electronic and reactivity properties of Au6Hn (n=1–12) clusters: A DFT approach. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2012.09.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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5
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Zhang M, Zhang H, Zhao L, Li Y, Luo Y. Low-energy isomer identification, structural evolution, and magnetic properties in manganese-doped gold clusters MnAu(n) (n = 1-16). J Phys Chem A 2012; 116:1493-502. [PMID: 22225504 DOI: 10.1021/jp2094406] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The size-dependent electronic, structural, and magnetic properties of Mn-doped gold clusters have been systematically investigated by using relativistic all-electron density functional theory with generalized gradient approximation. A number of new isomers are obtained for neutral MnAu(n) (n = 1-16) clusters to probe the structural evolution. The two-dimensional (2D) to three-dimensional (3D) transition occurs in the size range n = 7-10 with manifest structure competitions. From size n = 13 to n = 16, the MnAu(n) prefers a gold cage structure with Mn atom locating at the center. The relative stabilities of the ground-state MnAu(n) clusters show a pronounced odd-even oscillation with the number of Au atoms. The magnetic moments of MnAu(n) clusters vary from 3 μ(B) to 6 μ(B) with the different cluster size, suggesting that nonmagnetic Au(n) clusters can serve as a flexible host to tailor the dopant's magnetism, which has potential applications in new nanomaterials with tunable magnetic properties.
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Affiliation(s)
- Meng Zhang
- Department of Physics, East China University of Science and Technology, Shanghai 200237, China
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6
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Shi YK, Li ZH, Fan KN. Validation of Density Functional Methods for the Calculation of Small Gold Clusters. J Phys Chem A 2010; 114:10297-308. [DOI: 10.1021/jp105428b] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuan-Kun Shi
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, Shanghai 200433, People’s Republic of China
| | - Zhen Hua Li
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, Shanghai 200433, People’s Republic of China
| | - Kang-Nian Fan
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, Shanghai 200433, People’s Republic of China
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8
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Pakiari AH, Jamshidi Z. Interaction of coinage metal clusters with chalcogen dihydrides. J Phys Chem A 2008; 112:7969-75. [PMID: 18683913 DOI: 10.1021/jp804033w] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The interaction of chalcogen dihydrides (H 2E; E = O, S, and Se) with small coinage metal clusters (M n ; M = Cu, Ag, and Au, n = 3 and 4) is studied based on density functional theory, with a focus on the nature of chalcogen-metal bonds. A newly developed pseudopotential-based correlation-consistent basis set is used for metal clusters together with the 6-311++G** basis set for the remaining atoms. Geometrical data identified that no significant deviation has been observed for molecules before and after complexation. For these three metals, binding energy calculations indicate that gold has the highest and silver has the lowest affinities for interaction with H 2E. In comparison with gold and copper, complexation between silver and chalcogen dihydrides is significantly weaker. It is found that interaction of H 2E molecules with the coinage metals have the order of H 2Se > H 2S > H 2O. Therefore, in agreement with experimental works, our calculations confirm that the gold-selenium bond is the most stable. The nature of M-E bonds is also interpreted by means of the quantum theory of atoms in molecules (QTAIM) and natural bond orbital (NBO) analyses. According to the QTAIM results, the bonds are found to be partially ionic and partially covalent. Natural resonance theory (NRT) is used to calculate natural bond order and bond polarity. The NRT result indicates that the percentage of polarity of M-E bonds is affected by coinage metals.
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Affiliation(s)
- A H Pakiari
- Chemistry Department, College of Sciences, Shiraz University, Shiraz 71454, Iran.
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Abstract
Using newly developed correlation consistent basis sets for gold, the relative energies for the neutral Au8 geometric isomers have been re-evaluated and the vertical ionization potentials calculated. The results using the correlation consistent basis sets show that second-order Moller-Plesset perturbation theory calculations strongly favor nonplanar Au8 structures for all basis sets that were employed. However, the general trend at the coupled cluster singles and doubles with perturbative triples level of theory is to increasingly favor planar structures as the basis set is improved. The effects of basis set and the effects of core-valence correlation are discussed.
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Affiliation(s)
- Ryan M Olson
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
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Hong-Yan W, Xi-Bo L, Yong-Jian T, King RB, Schaefer HF. Structures and electronic properties of Au
n
-1
Cu and Au
n
(
n
⩽ 9) clusters. ACTA ACUST UNITED AC 2007. [DOI: 10.1088/1009-1963/16/6/029] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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11
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Abstract
Binding of gold and silver clusters with amino acids (glycine and cysteine) was studied using density functional theory (DFT). Geometries of neutral, anionic, and cationic amino acids with Au3 and Ag3 clusters were optimized using the DFT-B3LYP approach. The mixed basis set used here was denoted by 6-31+G** (union or logical sum)LANL2DZ. This work demonstrated that the interaction of amino acids with gold and silver clusters is governed by two major bonding factors: (a) the anchoring N-Au(Ag), O-Au(Ag), and S-Au(Ag) bonds and (b) the nonconventional N-H...Au(Ag) and O-H...Au(Ag) hydrogen bonds. Among the three forms of amino acids, anionic ones exhibited the most tendency to interact with the Au and Ag clusters. Natural bond orbital analysis was performed to calculate charge transfer, natural population analysis, and Wiberg bond indices of the complexes. Atoms-in-molecules theory was also applied to determine the nature of interactions. It was shown that these bonds are partially electrostatic and partially covalent.
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Affiliation(s)
- A H Pakiari
- Chemistry Department, College of Sciences, Shiraz University, Shiraz 71454, Iran.
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12
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Li XB, Wang HY, Yang XD, Zhu ZH, Tang YJ. Size dependence of the structures and energetic and electronic properties of gold clusters. J Chem Phys 2007; 126:084505. [PMID: 17343456 DOI: 10.1063/1.2434779] [Citation(s) in RCA: 154] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The structures and stabilities of gold clusters with up to 14 atoms have been determined by density-functional theory. The structure optimizations and frequency analysis are performed with the Perdew-Wang 1991 gradient-corrected functional combined with the effective core potential and corresponding valence basis set (LANL2DZ). The turnover point from two-dimensional to three-dimensional geometry for gold clusters occurs at Au12. The energetic and electronic properties of the small gold clusters are strongly dependent on sizes and structures, which are in good agreement with experiment and other theoretical calculations. The even-odd oscillation in cluster stability and electronic properties predicted that the clusters with even numbers of atoms were more stable than the neighboring clusters with odd numbers of atoms. The stability and electronic structure properties of gold clusters are also characterized by the maximum hardness principle of chemical reactivity and minimum polarizability principle.
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Affiliation(s)
- Xi-Bo Li
- Atomic and Molecular Physics Institute, Sichuan University, Chengdu 610065, People's Republic of China
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Abstract
Density functional theory (DFT) calculations were carried out to study gold clusters of up to 55 atoms. Between the linear and zigzag monoatomic Au nanowires, the zigzag nanowires were found to be more stable. Furthermore, the linear Au nanowires of up to 2 nm are formed by slightly stretched Au dimers. These suggest that a substantial Peierls distortion exists in those structures. Planar geometries of Au clusters were found to be the global minima till the cluster size of 13. A quantitative correlation is provided between various properties of Au clusters and the structure and size. The relative stability of selected clusters was also estimated by the Sutton-Chen potential, and the result disagrees with that obtained from the DFT calculations. This suggests that a modification of the Sutton-Chen potential has to be made, such as obtaining new parameters, in order to use it to search the global minima for bigger Au clusters.
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Affiliation(s)
- Li Xiao
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, Illinois 62901, USA.
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14
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Temelso B, Sherrill CD. High accuracy ab initio studies of Li6+, Li6−, and three isomers of Li6. J Chem Phys 2005; 122:064315. [PMID: 15740380 DOI: 10.1063/1.1846671] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The structures and energetics of Li(6) (+), Li(6) (-) and three isomers of Li(6) are investigated using the coupled-cluster singles, doubles and perturbative triples [CCSD(T)] method with valence and core-valence correlation consistent basis sets of double- to quadruple-zeta quality (cc-pVXZ and cc-pCVXZ, where X=D-Q). These results are compared with qualitatively different predictions by less reliable methods. Our results conclusively show that the D(4h) isomer is the global minimum structure for Li(6). It is energetically favored over the C(5v) and D(3h) structures by about 5.1 and 7.1 kcal mol(-1), respectively, after the inclusion of the zero-point vibrational energy (ZPVE) correction. Our most accurate total atomization energies are 123.2, 117.6, and 115.7 kcal mol(-1) for the D(4h), C(5v), and D(3h) isomers, respectively. Comparison of experimental optical absorption spectra with our computed electronic spectra also indicate that the D(4h) isomer is indeed the most stable structure. The cation, anion, and some higher spin states are investigated using the less expensive cc-pCVDZ basis set. Adiabatic ionization energies and electron affinities are reported and compared with experimental values. Predictions of molecular properties are found to be sensitive to the basis set used and to the treatment of electron correlation.
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Affiliation(s)
- Berhane Temelso
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
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15
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Remacle F, Kryachko ES. Structure and energetics of two- and three-dimensional neutral, cationic, and anionic gold clusters Au5⩽n⩽9Z (Z=0,±1). J Chem Phys 2005; 122:44304. [PMID: 15740245 DOI: 10.1063/1.1830451] [Citation(s) in RCA: 106] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Low-energy structures are found on the potential energy surfaces of the neutral, cationic, and anionic gold clusters Au(5< or = n < or =9)Z (Z=0,+/-1) and on the neutral potential energy surface of Au(9). These structures provide insights on the two to three dimensional (2D-->3D) transition in small neutral and charged gold clusters. It is demonstrated that the size threshold for the 2D-3D coexistence is lower for cationic than neutral gold clusters: the 2D-3D coexistence develops for Au(5) (+) and Au(7) (+) on the cationic potential energy surfaces while only for Au(9) on the neutral. Two metastable long-lived dianions of gold clusters are also reported.
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Affiliation(s)
- F Remacle
- Department of Chemistry B6c, University of Liege Sart-Tilman, B-4000 Liege 1, Belgium.
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16
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Olson RM, Varganov S, Gordon MS, Metiu H, Chretien S, Piecuch P, Kowalski K, Kucharski SA, Musial M. Where Does the Planar-to-Nonplanar Turnover Occur in Small Gold Clusters? J Am Chem Soc 2004; 127:1049-52. [PMID: 15656643 DOI: 10.1021/ja040197l] [Citation(s) in RCA: 194] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Several levels of theory, including both Gaussian-based and plane wave density functional theory (DFT), second-order perturbation theory (MP2), and coupled cluster methods (CCSD(T)), are employed to study Au6 and Au8 clusters. All methods predict that the lowest energy isomer of Au6 is planar. For Au8, both DFT methods predict that the two lowest isomers are planar. In contrast, both MP2 and CCSD(T) predict the lowest Au8 isomers to be nonplanar.
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Affiliation(s)
- Ryan M Olson
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
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17
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Small Gold Clusters Au5≤n≤8 and Their Cationic and Anionic Cousins. ADVANCES IN QUANTUM CHEMISTRY 2004. [DOI: 10.1016/s0065-3276(04)47023-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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18
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Time-resolved photodissociation and threshold collision-induced dissociation of anionic gold clusters. Chem Phys 2000. [DOI: 10.1016/s0301-0104(00)00165-8] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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19
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20
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Whoolery Johnson AJ, Spencer B, Dahl LF. Synthesis and experimental/theoretical investigation of the high-nuclearity cubic Td [Au6Ni12(CO)24]2− cluster, an initial example of a discrete gold-nickel bimetallic-bonded species: comparative analysis of the results of electron-counting methods and the Fenske-Hall MO model in rationalizing the bonding interactions of its Au6Ni12 core consisting of five face-fused metal octahedra. Inorganica Chim Acta 1994. [DOI: 10.1016/0020-1693(94)04220-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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21
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Handschuh H, Ganteför G, Bechthold PS, Eberhardt W. A comparison of photoelectron spectroscopy and two‐photon ionization spectroscopy: Excited states of Au2, Au3, and Au4. J Chem Phys 1994. [DOI: 10.1063/1.467267] [Citation(s) in RCA: 76] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Liao D, Balasubramanian K. Electronic structure of Cu6, Ag6, Au6, and their positive ions. J Chem Phys 1992. [DOI: 10.1063/1.463093] [Citation(s) in RCA: 61] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Relativistic and electron-correlation contributions in atomic and molecular properties: benchmark calculations on Au and Au2. Chem Phys Lett 1991. [DOI: 10.1016/0009-2614(91)90409-3] [Citation(s) in RCA: 82] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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