1
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Lin Z, Liu J, Zhang C, Zheng X, Cheng L. Elucidating Anomalous Intensity Ratios in Chlorine L-Edge X-ray Absorption Spectroscopy: Multiplet Effects and Core Rydberg Transitions. J Phys Chem A 2024; 128:8373-8383. [PMID: 39312206 DOI: 10.1021/acs.jpca.4c04089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2024]
Abstract
A relativistic core-valence-separated equation-of-motion coupled cluster (CVS-EOM-CC) study of chlorine L2,3-edge X-ray absorption near-edge structure (XANES) spectra using CH3Cl and CH2ICl as representative molecules is reported. The nearly identical intensity for the main features in the L2- and L3-edge XANES spectra is attributed to multiplet effects and the overlap between core-valence and core Rydberg transitions. The multiplet effects originating from the interaction between the core hole and the C-Cl σ* orbitals account for around half of the deviation of the L3 and L2 intensity ratio from the 2:1 ratio of the numbers of 2p3/2 and 2p1/2 electrons. The 2p3/2 → 4s core Rydberg transitions are shown to overlap with the 2p1/2 → σ* transitions and contribute to the other half of the intensity anomaly. We demonstrate that triple excitations in CVS-EOM-CC calculations play important roles in accurate simulation of the overlap between the 2p1/2 → σ* and 2p3/2 → 4s transitions.
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Affiliation(s)
- Zhe Lin
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Junzi Liu
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Chaoqun Zhang
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Xuechen Zheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Lan Cheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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2
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Banerjee S, Sokolov AY. Algebraic Diagrammatic Construction Theory for Simulating Charged Excited States and Photoelectron Spectra. J Chem Theory Comput 2023. [PMID: 37191264 DOI: 10.1021/acs.jctc.3c00251] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Charged excitations are electronic transitions that involve a change in the total charge of a molecule or material. Understanding the properties and reactivity of charged species requires insights from theoretical calculations that can accurately describe orbital relaxation and electron correlation effects in open-shell electronic states. In this Review, we describe the current state of algebraic diagrammatic construction (ADC) theory for simulating charged excitations and its recent developments. We start with a short overview of ADC formalism for the one-particle Green's function, including its single- and multireference formulations and extension to periodic systems. Next, we focus on the capabilities of ADC methods and discuss recent findings about their accuracy for calculating a wide range of excited-state properties. We conclude our Review by outlining possible directions for future developments of this theoretical approach.
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Affiliation(s)
- Samragni Banerjee
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - Alexander Yu Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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3
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Otis L, Neuscamman E. A promising intersection of excited‐state‐specific methods from quantum chemistry and quantum Monte Carlo. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2023. [DOI: 10.1002/wcms.1659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Affiliation(s)
- Leon Otis
- Department of Physics University of California Berkeley Berkeley California USA
| | - Eric Neuscamman
- Department of Chemistry University of California Berkeley Berkeley California USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory Berkeley California USA
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4
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Staemmler V. Wavefunction-based quantum-chemical ab initiocalculations for core electron binding energies of small open shell molecules. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2022; 34:354004. [PMID: 35700722 DOI: 10.1088/1361-648x/ac78b9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 06/14/2022] [Indexed: 06/15/2023]
Abstract
Core electron binding energies (CEBEs), i.e. ionization energies of 1s core orbitals, are calculated by means of wavefunction-based quantum-chemicalab initiomethods for a series of small open-shell molecules containing first-row atoms. The calculations are performed in three steps: (a) Koopmans' theorem, where the orbitals of the electronic ground state are used unchanged also for the ions, (b) Hartree-Fock or self consistent field (SCF) approximation in which the orbitals are allowed to relax after 1s ionization (ΔSCF), (c) dynamic correlation effects on top of SCF. For open-shell molecules 1s ionization leads to ions in several spin states, mostly to a pair of a triplet and a singlet state. In several cases one or both of these ionic states are only poorly described by a single-reference SCF wavefunction, therefore a multi-reference complete active space self consistent field (CAS-SCF) wavefunction is used instead. The correlation effects are evaluated by means of our multi-reference coupled electron pair approximation program. The accuracy of the calculated CEBEs is in the order of 0.1-0.4 eV. This is in agreement with experimental results for NO and O2. But there exist only very few gas phase data for CEBEs of open-shell molecules.
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Affiliation(s)
- Volker Staemmler
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, D-44780 Bochum, Germany
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5
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Zheng X, Zhang C, Jin Z, Southworth SH, Cheng L. Benchmark relativistic delta-coupled-cluster calculations of K-edge core-ionization energies of third-row elements. Phys Chem Chem Phys 2022; 24:13587-13596. [PMID: 35616685 DOI: 10.1039/d2cp00993e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
A benchmark computational study of K-edge core-ionization energies of third-row elements using relativistic delta-coupled-cluster (ΔCC) methods and a revised core-valence separation (CVS) scheme is reported. High-level relativistic (HLR) corrections beyond the spin-free exact two-component theory in its one-electron variant (SFX2C-1e), including the contributions from two-electron picture-change effects, spin-orbit coupling, the Breit term, and quantum electrodynamics effects, have been taken into account and demonstrated to play an important role. Relativistic ΔCC calculations are shown to provide accurate results for core-ionization energies of third-row elements. The SFX2C-1e-CVS-ΔCC results augmented with HLR corrections show a maximum deviation of less than 0.5 eV with respect to experimental values.
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Affiliation(s)
- Xuechen Zheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, MD 21218, USA.
| | - Chaoqun Zhang
- Department of Chemistry, The Johns Hopkins University, Baltimore, MD 21218, USA.
| | - Zheqi Jin
- Department of Chemistry, University College London, London, WC1E 6BT, UK
| | - Stephen H Southworth
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Lan Cheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, MD 21218, USA.
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6
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Hardikar TS, Neuscamman E. A self-consistent field formulation of excited state mean field theory. J Chem Phys 2020; 153:164108. [DOI: 10.1063/5.0019557] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tarini S. Hardikar
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Eric Neuscamman
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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7
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Zhao L, Neuscamman E. Excited state mean-field theory without automatic differentiation. J Chem Phys 2020; 152:204112. [DOI: 10.1063/5.0003438] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Affiliation(s)
- Luning Zhao
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Eric Neuscamman
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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8
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Zheng X, Liu J, Doumy G, Young L, Cheng L. Hetero-site Double Core Ionization Energies with Sub-electronvolt Accuracy from Delta-Coupled-Cluster Calculations. J Phys Chem A 2020; 124:4413-4426. [DOI: 10.1021/acs.jpca.0c00901] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xuechen Zheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Junzi Liu
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Gilles Doumy
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Linda Young
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Lan Cheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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9
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Tran LN, Shea JAR, Neuscamman E. Tracking Excited States in Wave Function Optimization Using Density Matrices and Variational Principles. J Chem Theory Comput 2019; 15:4790-4803. [DOI: 10.1021/acs.jctc.9b00351] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Lan Nguyen Tran
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Ho Chi Minh City Institute of Physics, VAST, Ho Chi Minh City 700000, Vietnam
| | - Jacqueline A. R. Shea
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Eric Neuscamman
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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10
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Zheng X, Cheng L. Performance of Delta-Coupled-Cluster Methods for Calculations of Core-Ionization Energies of First-Row Elements. J Chem Theory Comput 2019; 15:4945-4955. [DOI: 10.1021/acs.jctc.9b00568] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xuechen Zheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Lan Cheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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11
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Bokarev SI, Kühn O. Theoretical X‐ray spectroscopy of transition metal compounds. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1433] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | - Oliver Kühn
- Institut für Physik Universität Rostock Rostock Germany
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12
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Liu J, Matthews D, Coriani S, Cheng L. Benchmark Calculations of K-Edge Ionization Energies for First-Row Elements Using Scalar-Relativistic Core–Valence-Separated Equation-of-Motion Coupled-Cluster Methods. J Chem Theory Comput 2019; 15:1642-1651. [DOI: 10.1021/acs.jctc.8b01160] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Junzi Liu
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Devin Matthews
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Sonia Coriani
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Lan Cheng
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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13
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Norman P, Dreuw A. Simulating X-ray Spectroscopies and Calculating Core-Excited States of Molecules. Chem Rev 2018; 118:7208-7248. [DOI: 10.1021/acs.chemrev.8b00156] [Citation(s) in RCA: 164] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Patrick Norman
- Department of Theoretical Chemistry and Biology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Ruprecht-Karls University, Im Neuenheimer Feld 205, 69120 Heidelberg, Germany
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14
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Delesma FA, Van den Bossche M, Grönbeck H, Calaminici P, Köster AM, Pettersson LGM. A Chemical View on X-ray Photoelectron Spectroscopy: the ESCA Molecule and Surface-to-Bulk XPS Shifts. Chemphyschem 2017; 19:169-174. [DOI: 10.1002/cphc.201701135] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Revised: 12/04/2017] [Indexed: 11/06/2022]
Affiliation(s)
- Francisco A. Delesma
- Programa de Doctorado en Nanociencias y Nanotecnología; CINVESTAV; Instituto Politécnico Nacional 2508; A.P. 14-740, Ciudad de México 07000 México
| | - Maxime Van den Bossche
- Department of Physics and Competence Centre for Catalysis; Chalmers University of Technology; 412 96 Göteborg Sweden
- Science Institute and Faculty of Physical Sciences; University of Iceland; 107 Reykjavik Iceland
| | - Henrik Grönbeck
- Department of Physics and Competence Centre for Catalysis; Chalmers University of Technology; 412 96 Göteborg Sweden
| | - Patrizia Calaminici
- Programa de Doctorado en Nanociencias y Nanotecnología; CINVESTAV; Instituto Politécnico Nacional 2508; A.P. 14-740, Ciudad de México 07000 México
- Departamento de Química; CINVESTAV; Instituto Politécnico Nacional 2508; A.P. 14-740 Ciudad de México 07000 México
| | - Andreas M. Köster
- Programa de Doctorado en Nanociencias y Nanotecnología; CINVESTAV; Instituto Politécnico Nacional 2508; A.P. 14-740, Ciudad de México 07000 México
- Departamento de Química; CINVESTAV; Instituto Politécnico Nacional 2508; A.P. 14-740 Ciudad de México 07000 México
| | - Lars G. M. Pettersson
- Department of Physics; AlbaNova University Center; Stockholm University; 106 91 Stockholm Sweden
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15
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Benchmarking density functionals and Gaussian basis sets for calculation of core-electron binding energies in amino acids. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2115-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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16
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Löytynoja T, Harczuk I, Jänkälä K, Vahtras O, Ågren H. Quantum-classical calculations of X-ray photoelectron spectra of polymers-Polymethyl methacrylate revisited. J Chem Phys 2017; 146:124902. [PMID: 28388163 DOI: 10.1063/1.4978941] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this work, we apply quantum mechanics/molecular mechanics (QM/MM) approach to predict core-electron binding energies and chemical shifts of polymers, obtainable via X-ray photoelectron spectroscopy(XPS), using polymethyl methacrylate as a demonstration example. The results indicate that standard parametrizations of the quantum part (basis sets, level of correlation) and the molecular mechanics parts (decomposed charges, polarizabilities, and capping technique) are sufficient for the QM/MM model to be predictive for XPS of polymers. It is found that the polymer environment produces contributions to the XPS binding energies that are close to monotonous with the number of monomer units, totally amounting to approximately an eV decrease in binding energies. In most of the cases, the order of the shifts is maintained, and even the relative size of the differential shifts is largely preserved. The coupling of the internal core-hole relaxation to the polymer environment is found to be weak in each case, amounting only to one or two tenths of an eV. The main polymeric effect is actually well estimated already at the frozen orbital level of theory, which in turn implies a substantial computational simplification. These conclusions are best represented by the cases where the ionized monomer and its immediate surrounding are treated quantum mechanically. If the QM region includes only a single monomer, a couple of anomalies are spotted, which are referred to the QM/MM interface itself and to the neglect of a possible charge transfer.
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Affiliation(s)
- T Löytynoja
- Nano and Molecular Systems Research Unit, University of Oulu, P.O. Box 3000, FIN-90014 Oulu, Finland
| | - I Harczuk
- Division of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - K Jänkälä
- Nano and Molecular Systems Research Unit, University of Oulu, P.O. Box 3000, FIN-90014 Oulu, FinlandDivision of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden Laboratory for Nonlinear Optics and Spectroscopy, Siberian Federal University, 660041 Krasnoyarsk, Russia
| | - O Vahtras
- Division of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - H Ågren
- Division of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
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17
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Corral I, González-Vázquez J, Martín F. Potential Energy Surfaces of Core-Hole and Shake-Up States for Dissociative Ionization Studies. J Chem Theory Comput 2017; 13:1723-1736. [DOI: 10.1021/acs.jctc.6b01214] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Inés Corral
- Departamento
de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute
for Advanced Research in Chemical Sciences (IADCHEM), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Jesús González-Vázquez
- Departamento
de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute
for Advanced Research in Chemical Sciences (IADCHEM), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Fernando Martín
- Departamento
de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Instituto Madrileño de Estudios Avanzados en Nanociencia, Campus de Cantoblanco, 28049 Madrid, Spain
- Condensed
Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
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18
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Hanson-Heine MWD, Wriglesworth A, Uroos M, Calladine JA, Murphy TS, Hamilton M, Clark IP, Towrie M, Dowden J, Besley NA, George MW. Calculating singlet excited states: Comparison with fast time-resolved infrared spectroscopy of coumarins. J Chem Phys 2015; 142:154119. [DOI: 10.1063/1.4917311] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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19
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Tolbatov I, Chipman DM. Comparative study of Gaussian basis sets for calculation of core electron binding energies in first-row hydrides and glycine. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1560-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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20
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Ljubić I. Reliability of Density Functional and Perturbation Theories for Calculating Core-Ionization Spectra of Free Radicals. J Chem Theory Comput 2014; 10:2333-43. [DOI: 10.1021/ct500111n] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ivan Ljubić
- Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička Cesta 54, HR-10000 Zagreb, Croatia
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21
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Tolbatov I, Chipman DM. Performance of density functionals for computation of core electron binding energies in first-row hydrides and glycine. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1473-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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22
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Hanson-Heine MWD, George MW, Besley NA. Calculating excited state properties using Kohn-Sham density functional theory. J Chem Phys 2013; 138:064101. [PMID: 23425455 DOI: 10.1063/1.4789813] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The accuracy of excited states calculated with Kohn-Sham density functional theory using the maximum overlap method has been assessed for the calculation of adiabatic excitation energies, excited state structures, and excited state harmonic and anharmonic vibrational frequencies for open-shell singlet excited states. The computed Kohn-Sham adiabatic excitation energies are improved significantly by post self-consistent field spin-purification, but remain too low compared with experiment with a larger error than time-dependent density functional theory. Excited state structures and vibrational frequencies are also improved by spin-purification. The structures show a comparable accuracy to time-dependent density functional theory, while the harmonic vibrational frequencies are found to be more accurate for the majority of vibrational modes. The computed harmonic vibrational frequencies are also further improved by perturbative anharmonic corrections, suggesting a good description of the potential energy surface. Overall, excited state Kohn-Sham density functional theory is shown to provide an efficient method for the calculation of excited state structures and vibrational frequencies in open-shell singlet systems and provides a promising technique that can be applied to study large systems.
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Affiliation(s)
- Magnus W D Hanson-Heine
- School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom
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23
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Carravetta V, Ågren H. Symmetry breaking and hole localization in multiple core electron ionization. J Phys Chem A 2013; 117:6798-802. [PMID: 23859627 DOI: 10.1021/jp406602y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Motivated by recent opportunitites to study hollow molecules with multiple core holes offered by X-ray free electron lasers, we revisit the core-hole localization and symmetry breaking problem, now studying ionization of more than one core electron. It is shown, using a N2 molecule with one, two, three, and four core holes, for example, that in a multiconfigurational determination of the core ionization potentials employing a molecular point group with broken inversion symmetry, one particular configuration is sufficient to account for the symmetry breaking relaxation energy in an independent particle approximation in the case of one or three holes, whereas the choice of point group symmetry is unessential for two and four holes. The relaxation energy follows a quadratic dependence on the number of holes in both representations.
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Affiliation(s)
- V Carravetta
- CNR-IPCF, Institute of Chemical and Physical Processes, via G. Moruzzi 1, I-56124 Pisa, Italy.
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24
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Tabayashi K, Takahashi O, Namatame H, Taniguchi M. Substituent R-effects on the core–electron excitation spectra of hydrogen-bonded carboxylic-acid (R–COOH) clusters: Comparison between acetic-acid and formic-acid clusters. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2012.10.043] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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25
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Transition energy and potential energy curves for ionized inner-shell states of CO, O2 and N2 calculated by several inner-shell multiconfigurational approaches. J Mol Model 2012; 19:2027-33. [DOI: 10.1007/s00894-012-1622-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2012] [Accepted: 10/01/2012] [Indexed: 11/27/2022]
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26
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Accurate time-dependent density functional theory calculations of the near edge X-ray absorption fine structure of large systems. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1267-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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27
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Gao YK, Traeger F, Kotsis K, Staemmler V. A theoretical study of the XP and NEXAFS spectra of alanine: gas phase molecule, crystal, and adsorbate at the ZnO(101̄0) surface. Phys Chem Chem Phys 2011; 13:10709-18. [DOI: 10.1039/c0cp02295k] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Andersson E, Niskanen J, Hedin L, Eland JHD, Linusson P, Karlsson L, Rubensson JE, Carravetta V, Agren H, Feifel R. Core-valence double photoionization of the CS(2) molecule. J Chem Phys 2010; 133:094305. [PMID: 20831316 DOI: 10.1063/1.3469812] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Double photoionization spectra of the CS(2) molecule have been recorded using the TOF-PEPECO technique in combination with synchrotron radiation at the photon energies hν=220, 230, 240, 243, and 362.7 eV. The spectra were recorded in the S 2p and C 1s inner-shell ionization regions and reflect dicationic states formed out of one inner-shell vacancy and one vacancy in the valence region. MCSCF calculations were performed to model the energies of the dicationic states. The spectra associated with a S 2p vacancy are well structured and have been interpreted in some detail by comparison to conventional S 2p and valence photoelectron spectra. The lowest inner-shell-valence dicationic state is observed at the vertical double ionization energy 188.45 eV and is associated with a (2p(3/2))(-1)(2π(g))(-1) double vacancy. The spectrum connected to the C 1s vacancy shows a distinct line at 310.8 eV, accompanied by additional broad features at higher double ionization energies. This line is associated with a (C 1s)(-1)(2π(g))(-1) double vacancy.
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Affiliation(s)
- E Andersson
- Department of Physics and Astronomy, Uppsala University, Box 516, SE-751 20 Uppsala, Sweden
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Besley NA, Asmuruf FA. Time-dependent density functional theory calculations of the spectroscopy of core electrons. Phys Chem Chem Phys 2010; 12:12024-39. [PMID: 20714478 DOI: 10.1039/c002207a] [Citation(s) in RCA: 177] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent advances in X-ray sources have led to a renaissance in spectroscopic techniques in the X-ray region. These techniques that involve the excitation of core electrons can provide an atom specific probe of electronic structure and provide powerful analytical tools that are used in many fields of research. Theoretical calculations can often play an important role in the analysis and interpretation of experimental spectra. In this perspective, we review recent developments in quantum chemical calculations of X-ray absorption spectra, focusing on the use of time-dependent density functional theory to study core excitations. The practical application of these calculations is illustrated with examples drawn from surface science and bioinorganic chemistry, and the application of these methods to study X-ray emission spectroscopy is explored.
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Affiliation(s)
- Nicholas A Besley
- School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, UK.
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Besley NA, Gilbert ATB, Gill PMW. Self-consistent-field calculations of core excited states. J Chem Phys 2009; 130:124308. [DOI: 10.1063/1.3092928] [Citation(s) in RCA: 213] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Besley NA, Peach MJG, Tozer DJ. Time-dependent density functional theory calculations of near-edge X-ray absorption fine structure with short-range corrected functionals. Phys Chem Chem Phys 2009; 11:10350-8. [DOI: 10.1039/b912718f] [Citation(s) in RCA: 142] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Jiemchooroj A, Ekström U, Norman P. Near-edge x-ray absorption and natural circular dichroism spectra of L-alanine: A theoretical study based on the complex polarization propagator approach. J Chem Phys 2007; 127:165104. [DOI: 10.1063/1.2800024] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Schöll A, Zou Y, Jung M, Schmidt T, Fink R, Umbach E. Line shapes and satellites in high-resolution x-ray photoelectron spectra of large pi-conjugated organic molecules. J Chem Phys 2006; 121:10260-7. [PMID: 15549902 DOI: 10.1063/1.1807812] [Citation(s) in RCA: 103] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present a high-resolution C1s and O1 s x-ray photoemission (XPS) study for condensed films of pi-conjugated organic molecules, namely, of the anhydrides 3,4,9,10-perylene-tetracarboxylic acid dianhydride, 1,4,5,8-naphthalene-tetracarboxylic acid dianhydride, 1,8-naphthalene dicarboxylic acid anhydride, and benzoperylene-(1,8)-dicarboxylic acid anhydride as well as the quinoic acenaphthenequinone. Although the functional groups are identical for the anhydrides, the molecules show very different photoemission fine structure thus providing a detailed fingerprint. A simultaneous peak fit analysis of the XPS spectra of all molecules allows to consistently determine the ionization potentials of all chemically different carbon and oxygen atoms. Additional structures in the C1s and O1s spectra are interpreted as shakeup satellites and assigned with the help of singles and doubles configuration interaction calculations. These satellites provide further information on multielectron excitations and must be taken into account for quantitative investigations.
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Affiliation(s)
- A Schöll
- Experimentelle Physik II, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany.
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Tabayashi K, Yamamoto K, Takahashi O, Tamenori Y, Harries JR, Gejo T, Iseda M, Tamura T, Honma K, Suzuki IH, Nagaoka SI, Ibuki T. Inner-shell excitation spectroscopy and fragmentation of small hydrogen-bonded clusters of formic acid after core excitations at the oxygen K edge. J Chem Phys 2006; 125:194307. [PMID: 17129103 DOI: 10.1063/1.2387949] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Inner-shell excitation spectra and fragmentation of small clusters of formic acid have been studied in the oxygen K-edge region by time-of-flight fragment mass spectroscopy. In addition to several fragment cations smaller than the parent molecule, we have identified the production of HCOOH.H+ and H3O+ cations characteristic of proton transfer reactions within the clusters. Cluster-specific excitation spectra have been generated by monitoring the partial ion yields of the product cations. Resonance transitions of O1s(C[double bond]O/OH) electrons into pi(CO)* orbital in the preedge region were found to shift in energy upon clusterization. A blueshift of the O1s(C[double bond]O)-->pi(CO)* transition by approximately 0.2 eV and a redshift of the O1s(OH)-->pi(CO)* by approximately 0.6 eV were observed, indicative of strong hydrogen-bond formation within the clusters. The results have been compared with a recent theoretical calculation, which supports the conclusion that the formic-acid clusters consist of the most stable cyclic dimer andor trimer units. Specifically labeled formic acid-d, HCOOD, was also used to examine the core-excited fragmentation mechanisms. These deuterium-labeled experiments showed that HDO+ was formed via site-specific migration of a formyl hydrogen within an individual molecule, and that HD2O+ was produced via the subsequent transfer of a deuterium atom from the hydroxyl group of a nearest-neighbor molecule within a cationic cluster. Deuteron (proton) transfer from the hydroxyl site of a hydrogen-bond partner was also found to take place, producing deuteronated HCOOD.D+ (protonated HCOOH.H+) cations within the clusters.
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Affiliation(s)
- Kiyohiko Tabayashi
- Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
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Shimada S, Hiroi T, Ida T, Mizuno M, Endo K, Kurmaev EZ, Moewes A. X-ray photoelectron and carbon Kα emission measurements and calculations of O-, CO-, N-, and S-containing substances. ACTA ACUST UNITED AC 2006. [DOI: 10.1002/polb.20991] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Morita M, Mori M, Sunami T, Yoshida H, Hiraya A. Ionic fragmentation processes of core-excited α-alanine in gas phase. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2005.09.039] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Shirai S, Yamamoto S, Hyodo SA. Accurate calculation of core-electron binding energies: Multireference perturbation treatment. J Chem Phys 2004; 121:7586-94. [PMID: 15485218 DOI: 10.1063/1.1799911] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Multireference perturbation theory (MRPT) with multiconfigurational self-consistent field (MCSCF) reference functions is applied to the calculations of core-electron binding energies (CEBEs) of atoms and molecules. Orbital relaxations in a core-ionized state and electron correlation are both taken into account in a conventional MCSCF-MRPT procedure. In the MCSCF calculation, the target core ionized state is directly optimized as an excited state and this treatment can completely prevent a variational collapse. Multireference Moller-Plesset perturbation theory and multiconfigurational self-consistent field reference quasidegenerated perturbation theory were used to treat electron correlation. The present method quite accurately reproduced the 1s CEBEs of CH4, NH3, H2O, and FH; the average deviation from the experimental data is 0.11 eV using Ahlrichs' VTZ basis set. The C 1s and O 1s CEBEs of formic acid and acetic acid were calculated and the results are consistent with the bonding characters of the atoms in these molecules. The present procedure can also be applied to CEBEs of higher angular momentum orbitals by including spin-orbit coupling. The calculated CEBEs of Ar 2p, HCl 2p, Kr 3d, and HBr 3d are in reasonable agreement with the available experimental values. In the calculation of the 3d CEBEs, a relativistic correction significantly improves the agreements. The effect of polarization functions is also discussed.
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Affiliation(s)
- Soichi Shirai
- Toyota Central R&D Labs., Inc., Nagakute, Aichi 480-1192, Japan
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Ikenaga E, Isari K, Kudara K, Yasui Y, Sardar SA, Wada S, Sekitani T, Tanaka K, Mase K, Tanaka S. Study of ion desorption induced by carbon core excitation for poly-methylmethacrylate thin film using electron–ion coincidence spectroscopy. J Chem Phys 2001. [DOI: 10.1063/1.1335817] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Carravetta V, Iucci G, Ferri A, Russo M, Stranges S, de Simone M, Polzonetti G. Synchrotron radiation photoemission study of some π-conjugated alkynes in the gas phase: Experiment and theory. Chem Phys 2001. [DOI: 10.1016/s0301-0104(00)00396-7] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Otsuka T, Endo K, Suhara M, Chong D. Theoretical X-ray photoelectron spectra of polymers by deMon DFT calculations using the model dimers. J Mol Struct 2000. [DOI: 10.1016/s0022-2860(99)00364-6] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Snis A, Matar SF, Plashkevych O, Ågren H. Core ionization energies of carbon–nitrogen molecules and solids. J Chem Phys 1999. [DOI: 10.1063/1.480300] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Cavigliasso G, Chong DP. Accurate density-functional calculation of core-electron binding energies by a total-energy difference approach. J Chem Phys 1999. [DOI: 10.1063/1.480279] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Endo K, Maeda S, Aida M. Simulation of C1s Spectra of C- and O-Containing Polymers in XPS by ab initio MO Calculations Using Model Oligomers. Polym J 1997. [DOI: 10.1295/polymj.29.171] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Endo K, Kaneda Y, Okada H, Chong DP, Duffy P. Analysis of X-ray Photoelectron Spectra of Eight Polymers by deMon Density-Functional Calculations Using the Model Oligomers. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp961121h] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Luo Y, gren H, Guo J, Skytt P, Wassdahl N, Nordgren J. Sub-electron-volt chemical shifts and strong interference effects measured in the resonance x-ray scattering spectra of aniline. PHYSICAL REVIEW. A, ATOMIC, MOLECULAR, AND OPTICAL PHYSICS 1995; 52:3730-3736. [PMID: 9912678 DOI: 10.1103/physreva.52.3730] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Gel’mukhanov F, Ågren H. Core electron chemical shifts in conjugated molecules and polymers. J Chem Phys 1995. [DOI: 10.1063/1.470464] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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49
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Inoue C, Kaneda Y, Aida M, Endo K. Simulation of XPS of Poly(vinyl alcohol), Poly(acrylic acid), Poly(vinyl acetate), and Poly(methyl methacrylate) Polymers by an Ab Initio MO Method Using the Model Molecules. Polym J 1995. [DOI: 10.1295/polymj.27.300] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Electronic spectra of finite polyenes and polyacetylene obtained by electron and polarization propagator calculations. Theor Chem Acc 1994. [DOI: 10.1007/bf01114106] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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