1
|
Wang X, Zhu X, Wu P, Li Q, Li Z, Zhang X, Liu Z, Zhang Y, Du P. Differences in Kondo Splitting of Surface Quantum Systems Induced by Two Distinct Magnetic Tips: A Joint Method of DFT and HEOM. J Phys Chem A 2024; 128:4750-4760. [PMID: 38832647 DOI: 10.1021/acs.jpca.4c02067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2024]
Abstract
The interactions between a magnetic tip and local spin impurities initiate unconventional Kondo phenomena, such as asymmetric suppression or even splitting of the Kondo peak. However, a lack of realistic theoretical models and comprehensive explanations for this phenomenon persists due to the complexity of the interactions. This research employs a joint method of density functional theory (DFT) and hierarchical equation of motion (HEOM) to simulate and contrast the modulation of the spin state and Kondo behavior in the Fe/Cu(100) system with two distinct magnetic tips. A cobalt tip, possessing a larger magnetic moment, incites greater atomic displacement of the iron atom, more notable alterations in electronic structure, and enhanced charge transfer with the environment compared with the control process utilizing a nickel tip. Furthermore, the Kondo resonance undergoes asymmetric splitting as a result of the ferromagnetic correlation between the iron atom and the magnetic tip. The Co tip's higher spin polarization results in a wider spacing between the splitting peaks. This investigation underscores the precision of the DFT + HEOM approach in predicting complex quantum phenomena and explaining the underlying physical principles. This provides valuable theoretical support for developing more sophisticated quantum regulation experiments.
Collapse
Affiliation(s)
- Xiaoli Wang
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Xinru Zhu
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Ping Wu
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Qing Li
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Zhen Li
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Xiaolei Zhang
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Zhongmin Liu
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Yuexing Zhang
- Shandong Provincial Key Laboratory of Monocrystalline Silicon Semiconductor Materials and Technology, College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, PR China
| | - Pengli Du
- College of Chemical Engineering, Qinghai University, Xining 810016, PR China
| |
Collapse
|
2
|
Wang X, Zhuang Q, Wu P, Liu L, Wang F, Zhang X, Li X, Zheng X. Tweezer-like magnetic tip control of the local spin state in the FeOEP/Pb(111) adsorption system: a preliminary exploration based on first-principles calculations. NANOSCALE 2023; 15:2369-2376. [PMID: 36648279 DOI: 10.1039/d2nr04379c] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The magnetic interactions between the spin-polarized scanning tunnelling microscopy (SP-STM) tip and the localized spin impurities lead to various forms of the Kondo effect. Although these intriguing phenomena enrich Kondo physics, detailed theoretical simulations and explanations are still lacking due to the rather complex formation mechanisms. Here, by combining density functional theory (DFT), complete active space self-consistent field (CASSCF) theory, and hierarchical equations of motion (HEOM) methods, we perform first-principles-based simulation to elaborate the regulation process of the magnetic Co-tip on the spin state and transport behaviour of FeOEP/Pb(111) system. Compared with the non-magnetic tip, the stronger interaction between the magnetic tip and FeOEP molecule results in a more drastic deformation of the molecular structure with more electron transfer from the local environment to Fe-3d orbitals. The magnetic anisotropy of FeOEP changes very drastically from positive values in the tunnelling region to negative values in the contact region. The ferromagnetic electron correlation between the magnetic tip and the molecule induces an asymmetric Kondo line-shape near the Fermi level. This work highlights that the DFT + CASSCF + HEOM approach can not only predict complex quantum phenomena and explain underlying physical mechanisms, but also facilitate the design of more fascinating quantum control experiments.
Collapse
Affiliation(s)
- Xiaoli Wang
- College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, China
| | - Qingfeng Zhuang
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.
| | - Ping Wu
- College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, China
| | - Leifang Liu
- College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, China
| | - Fang Wang
- College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, China
| | - Xiaolei Zhang
- College of Chemistry and Chemical Engineering, Dezhou University, Dezhou 253023, China
| | - Xiangyang Li
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.
| | - Xiao Zheng
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.
| |
Collapse
|
3
|
Sim E, Song S, Vuckovic S, Burke K. Improving Results by Improving Densities: Density-Corrected Density Functional Theory. J Am Chem Soc 2022; 144:6625-6639. [PMID: 35380807 DOI: 10.1021/jacs.1c11506] [Citation(s) in RCA: 50] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Density functional theory (DFT) calculations have become widespread in both chemistry and materials, because they usually provide useful accuracy at much lower computational cost than wavefunction-based methods. All practical DFT calculations require an approximation to the unknown exchange-correlation energy, which is then used self-consistently in the Kohn-Sham scheme to produce an approximate energy from an approximate density. Density-corrected DFT is simply the study of the relative contributions to the total energy error. In the vast majority of DFT calculations, the error due to the approximate density is negligible. But with certain classes of functionals applied to certain classes of problems, the density error is sufficiently large as to contribute to the energy noticeably, and its removal leads to much better results. These problems include reaction barriers, torsional barriers involving π-conjugation, halogen bonds, radicals and anions, most stretched bonds, etc. In all such cases, use of a more accurate density significantly improves performance, and often the simple expedient of using the Hartree-Fock density is enough. This Perspective explains what DC-DFT is, where it is likely to improve results, and how DC-DFT can produce more accurate functionals. We also outline challenges and prospects for the field.
Collapse
Affiliation(s)
- Eunji Sim
- Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul 03722, Korea
| | - Suhwan Song
- Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul 03722, Korea
| | - Stefan Vuckovic
- Institute for Microelectronics and Microsystems (CNR-IMM), Via Monteroni,Campus Unisalento, 73100 Lecce, Italy.,Department of Chemistry & Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands
| | - Kieron Burke
- Departments of Chemistry and of Physics, University of California, Irvine, California 92697, United States
| |
Collapse
|
4
|
Song S, Vuckovic S, Sim E, Burke K. Density-Corrected DFT Explained: Questions and Answers. J Chem Theory Comput 2022; 18:817-827. [DOI: 10.1021/acs.jctc.1c01045] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Suhwan Song
- Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul, 03722, Korea
| | - Stefan Vuckovic
- Institute for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, Lecce, 73100, Italy
- Department of Chemistry&Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, Amsterdam, 1081HV, The Netherlands
| | - Eunji Sim
- Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul, 03722, Korea
| | - Kieron Burke
- Departments of Chemistry and of Physics, University of California, Irvine, California 92697, United States
| |
Collapse
|
5
|
Chaudhary MK, Srivastava A, Singh KK, Tandon P, Joshi BD. Computational evaluation on molecular stability, reactivity, and drug potential of frovatriptan from DFT and molecular docking approach. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.113031] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
6
|
Chan B, Collins E, Raghavachari K. Applications of isodesmic‐type reactions for computational thermochemistry. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1501] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Bun Chan
- Graduate School of Engineering Nagasaki University Nagasaki Japan
| | - Eric Collins
- Department of Chemistry Indiana University Bloomington Indiana USA
| | | |
Collapse
|
7
|
Dale SG, Johnson ER, Becke AD. Interrogating the Becke’05 density functional for non-locality information. J Chem Phys 2017; 147:154103. [DOI: 10.1063/1.5000909] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Stephen G. Dale
- Department of Chemistry, Dalhousie University, 6274 Coburg
Rd. P.O. Box 15000, Halifax, Nova Scotia B3H 4R2, Canada
| | - Erin R. Johnson
- Department of Chemistry, Dalhousie University, 6274 Coburg
Rd. P.O. Box 15000, Halifax, Nova Scotia B3H 4R2, Canada
| | - Axel D. Becke
- Department of Chemistry, Dalhousie University, 6274 Coburg
Rd. P.O. Box 15000, Halifax, Nova Scotia B3H 4R2, Canada
| |
Collapse
|
8
|
Chan B, Song JW, Kawashima Y, Hirao K. Performance of the OP correlation functional in relation to its formulation: Influence of the exchange component and the effect of incorporating same-spin correlations. J Comput Chem 2016; 37:1306-12. [DOI: 10.1002/jcc.24327] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2015] [Revised: 12/26/2015] [Accepted: 01/25/2016] [Indexed: 01/27/2023]
Affiliation(s)
- Bun Chan
- School of Chemistry; University of Sydney; New South Wales 2006 Australia
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-Machi, Chuo-Ku Kobe Hyogo 650-0047 Japan
| | - Jong-Won Song
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-Machi, Chuo-Ku Kobe Hyogo 650-0047 Japan
| | - Yukio Kawashima
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-Machi, Chuo-Ku Kobe Hyogo 650-0047 Japan
| | - Kimihiko Hirao
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-Machi, Chuo-Ku Kobe Hyogo 650-0047 Japan
| |
Collapse
|
9
|
Becke AD. Perspective: Fifty years of density-functional theory in chemical physics. J Chem Phys 2015; 140:18A301. [PMID: 24832308 DOI: 10.1063/1.4869598] [Citation(s) in RCA: 685] [Impact Index Per Article: 68.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Since its formal inception in 1964-1965, Kohn-Sham density-functional theory (KS-DFT) has become the most popular electronic structure method in computational physics and chemistry. Its popularity stems from its beautifully simple conceptual framework and computational elegance. The rise of KS-DFT in chemical physics began in earnest in the mid 1980s, when crucial developments in its exchange-correlation term gave the theory predictive power competitive with well-developed wave-function methods. Today KS-DFT finds itself under increasing pressure to deliver higher and higher accuracy and to adapt to ever more challenging problems. If we are not mindful, however, these pressures may submerge the theory in the wave-function sea. KS-DFT might be lost. I am hopeful the Kohn-Sham philosophical, theoretical, and computational framework can be preserved. This Perspective outlines the history, basic concepts, and present status of KS-DFT in chemical physics, and offers suggestions for its future development.
Collapse
Affiliation(s)
- Axel D Becke
- Department of Chemistry, Dalhousie University, 6274 Coburg Rd., P.O. Box 15000, Halifax, Nova Scotia B3H 4R2, Canada
| |
Collapse
|
10
|
Hu A, Dunlap BI. Three-center molecular integrals and derivatives using solid harmonic Gaussian orbital and Kohn–Sham potential basis sets. CAN J CHEM 2013. [DOI: 10.1139/cjc-2012-0485] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Three-center integrals over Gaussian orbital and Kohn–Sham (KS) basis sets are reviewed. An orbital basis function carries angular momentum about its atomic center. That angular momentum is created by solid harmonic differentiation with respect to the center of an s-type basis function. That differentiation can be brought outside any purely s-type integral, even nonlocal pseudopotential integrals. Thus the angular factors associated with angular momentum and differentiation with respect to atom position can be pulled outside loops over orbital and KS Gaussian exponents.
Collapse
Affiliation(s)
- Anguang Hu
- Defence Research and Development Canada-Suffield, P.O. Box 4000 Stn Main, Medicine Hat, AB T1A 8K6, Canada
| | - Brett I. Dunlap
- Code 6189, Chemistry Division, US Naval Research Laboratory, Washington, DC 20375-5342, USA
| |
Collapse
|
11
|
Dheivamalar S, Silambarasan V. DFT simulations and vibrational analysis of FTIR and FT-Raman spectra of 2-amino-4-methyl benzonitrile. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 96:480-484. [PMID: 22728284 DOI: 10.1016/j.saa.2012.05.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2010] [Revised: 04/25/2012] [Accepted: 05/03/2012] [Indexed: 06/01/2023]
Abstract
This work deals with the vibrational spectroscopy of 2-amino-4-methyl benzonitrile (AMB) by means of quantum chemical calculations. The mid and far FTIR and FT-Raman spectra were measured in the condensed state. Hartree-Fock (HF/6-31G(*)) and density functional theory (DFT, B3LYP/6-31G(*)) ab initio methods have been performed to interpret the observed vibrational spectra. The vibrational spectra were interpreted with the aid of normal coordinate analysis based on scaled density functional force field. The results of the calculations were applied to simulated infrared and Raman spectra of the title compound, which showed excellent agreement with the observed spectra.
Collapse
Affiliation(s)
- S Dheivamalar
- Department of Physics, Government Arts College For Women, Pudukkottai, Tamil Nadu, India.
| | | |
Collapse
|
12
|
Jing YQ, Han KL. Quantum mechanical effect in protein–ligand interaction. Expert Opin Drug Discov 2009; 5:33-49. [DOI: 10.1517/17460440903440127] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
|
13
|
Abstract
The density functional theory (DFT) foundations date from the 1920s with the work of Thomas and Fermi, but it was after the work of Hohenberg, Kohn, and Sham in the 1960s, and particularly with the appearance of the B3LYP functional in the early 1990s, that the widespread application of DFT has become a reality. DFT is less computationally demanding than other computational methods with a similar accuracy, being able to include electron correlation in the calculations at a fraction of time of post-Hartree-Fock methodologies. In this review we provide a brief outline of the density functional theory and of the historic development of the field, focusing later on the several types of density functionals currently available, and finishing with a detailed analysis of the performance of DFT across a wide range of chemical properties and system types, reviewed from the most recent benchmarking studies, which encompass several well-established density functionals together with the most recent efforts in the field. Globally, an overall picture of the level of performance of the plethora of currently available density functionals for each chemical property is drawn, with particular attention being dedicated to the relative performance of the popular B3LYP density functional.
Collapse
Affiliation(s)
- Sérgio Filipe Sousa
- REQUIMTE, Departamento de Química, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 687, 4169-007 Porto, Portugal
| | | | | |
Collapse
|
14
|
Musaev DG, Morokuma K. Potential Energy Surfaces of Transition-Metal-Catalyzed Chemical Reactions. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141540.ch2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
|
15
|
Krishnakumar V, Xavier RJ, Chithambarathanu T. Density functional theory study of vibrational spectra, and assignment of fundamental vibrational modes of succinimide and N-bromosuccinimide. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2005; 62:931-9. [PMID: 15950535 DOI: 10.1016/j.saa.2005.02.052] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2004] [Accepted: 02/23/2005] [Indexed: 05/02/2023]
Abstract
This work deals with the vibrational spectroscopy of succinimide and N-bromosuccinimide. The mid and far FTIR and FT-Raman spectra were measured in the condensed state. The fundamental vibrational frequencies and intensity of vibrational bands were evaluated using density functional theory (DFT) using standard B3LYP/6-31G(*) and B3LYP/6-311+G(**) methods and basis set combinations. The vibrational spectra were interpreted, with the aid of normal coordinate analysis based on a scaled quantum mechanical force field. The infrared and Raman spectra were also predicted from the calculated intensities. Comparison of simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes. Unambiguous vibrational assignment of all the fundamentals were made using the total energy distribution (TED).
Collapse
Affiliation(s)
- V Krishnakumar
- Department of Physics, Periyar University, Salem 636 011, India.
| | | | | |
Collapse
|
16
|
Zhou Z, Zhou X, Fu H, Fu A, Du D. Structure and vibrational frequencies of 2-butanimine. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2003; 59:2593-2601. [PMID: 12963456 DOI: 10.1016/s1386-1425(03)00042-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The conformational behavior and structural stability of 2-butanimine were investigated by utilizing ab initio calculations with 6-311++G** basis set at HF, MP2, B3LYP and BLYP levels. The vibrational frequencies of 2-butanimine were computed. Complete vibrational assignments were made on the basis of normal coordinate calculations for stable conformer of the molecule. HF results without scaled quantum mechanical (SQM) force field procedure considered are in bad agreement with experimental values. Of the two DFT methods, BLYP reproduces the observed fundamental frequencies most satisfactorily with the mean absolute deviation of the non-CH stretching modes less than 21.3 cm(-1). The results indicate that BLYP calculation is a very promising approach for understanding the observed spectral features.
Collapse
Affiliation(s)
- Zhengyu Zhou
- Department of Chemistry, Qufu Normal University, Shandong, Qufu 273165, People's Republic of China.
| | | | | | | | | |
Collapse
|
17
|
Luo Y, Wan X, Ito Y, Takami S, Kubo M, Miyamoto A. A density functional theory calculation on lanthanide monosulfides. Chem Phys 2002. [DOI: 10.1016/s0301-0104(02)00716-4] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
18
|
Legge FS, Nyberg GL, Peel JB. DFT Calculations for Cu-, Ag-, and Au-Containing Molecules. J Phys Chem A 2001. [DOI: 10.1021/jp0101918] [Citation(s) in RCA: 81] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- F. Sue Legge
- Department of Chemistry, La Trobe University, Victoria, 3086, Australia
| | - Graeme L. Nyberg
- Department of Chemistry, La Trobe University, Victoria, 3086, Australia
| | - J. Barrie Peel
- Department of Chemistry, La Trobe University, Victoria, 3086, Australia
| |
Collapse
|
19
|
|
20
|
Selçuki C, Aviyente V. How does the OH group affect the conversion of carbonyl oxide to dioxirane? ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0166-1280(00)00330-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
21
|
He Y, Cremer D. Molecular Geometries at Sixth Order Møller−Plesset Perturbation Theory. At What Order Does MP Theory Give Exact Geometries? J Phys Chem A 2000. [DOI: 10.1021/jp0014770] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuan He
- Department of Theoretical Chemistry, Göteborg University, Reutersgatan 2, S-41320 Göteborg, Sweden
| | - Dieter Cremer
- Department of Theoretical Chemistry, Göteborg University, Reutersgatan 2, S-41320 Göteborg, Sweden
| |
Collapse
|
22
|
Filatov M, Shaik S. Diradicaloids: Description by the Spin-Restricted, Ensemble-Referenced Kohn−Sham Density Functional Method. J Phys Chem A 2000. [DOI: 10.1021/jp0002289] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael Filatov
- The Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University, 91904 Jerusalem, Israel
| | - Sason Shaik
- The Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University, 91904 Jerusalem, Israel
| |
Collapse
|
23
|
Selçuki C, Aviyente V. Oxygen donor potential of carbonyl oxide and dioxirane: a DFT study. ACTA ACUST UNITED AC 1999. [DOI: 10.1016/s0166-1280(99)00146-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
24
|
Filatov M, Shaik S. Tetramethyleneethane (TME) Diradical: Experiment and Density Functional Theory Reach an Agreement. J Phys Chem A 1999. [DOI: 10.1021/jp9920489] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Michael Filatov
- Department of Organic Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel
| | - Sason Shaik
- Department of Organic Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel
| |
Collapse
|
25
|
Pan JW, Rogers DW, McLafferty FJ. Density functional calculations of enthalpies of hydrogenation, isomerization, and formation of small cyclic hydrocarbons. ACTA ACUST UNITED AC 1999. [DOI: 10.1016/s0166-1280(98)00496-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
26
|
A spin-restricted ensemble-referenced Kohn–Sham method and its application to diradicaloid situations. Chem Phys Lett 1999. [DOI: 10.1016/s0009-2614(99)00336-x] [Citation(s) in RCA: 188] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
27
|
Wang SG, Schwarz WHE. Density functional study of first row transition metal dihalides. J Chem Phys 1998. [DOI: 10.1063/1.477359] [Citation(s) in RCA: 91] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
|
28
|
|
29
|
Kieninger M, Suhai S, Ventura ON. Glycine conformations: gradient-corrected DFT-studies. ACTA ACUST UNITED AC 1998. [DOI: 10.1016/s0166-1280(98)00025-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
30
|
Selçuki C, Aviyente V. A DFT study of carbonyl oxide and its methyl-substituted analogues in solution. Chem Phys Lett 1998. [DOI: 10.1016/s0009-2614(98)00354-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
31
|
Adamo C, Barone V. Implementation and validation of the Lacks-Gordon exchange functional in conventional density functional and adiabatic connection methods. J Comput Chem 1998. [DOI: 10.1002/(sici)1096-987x(199803)19:4<418::aid-jcc4>3.0.co;2-v] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
|
32
|
Adamo C, Barone V. Exchange functionals with improved long-range behavior and adiabatic connection methods without adjustable parameters: The mPW and mPW1PW models. J Chem Phys 1998. [DOI: 10.1063/1.475428] [Citation(s) in RCA: 2719] [Impact Index Per Article: 100.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
|
33
|
Li J, Bursten BE. Electronic Structure of Cycloheptatrienyl Sandwich Compounds of Actinides: An(η7-C7H7)2 (An = Th, Pa, U, Np, Pu, Am). J Am Chem Soc 1997. [DOI: 10.1021/ja971149m] [Citation(s) in RCA: 80] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jun Li
- Contribution from the Department of Chemistry, The Ohio State University, Columbus, Ohio 43210
| | - Bruce E. Bursten
- Contribution from the Department of Chemistry, The Ohio State University, Columbus, Ohio 43210
| |
Collapse
|
34
|
Helgaker T, Gauss J, Jo/rgensen P, Olsen J. The prediction of molecular equilibrium structures by the standard electronic wave functions. J Chem Phys 1997. [DOI: 10.1063/1.473634] [Citation(s) in RCA: 290] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
|
35
|
Scott AP, Agranat I, Biedermann PU, Riggs NV, Radom L. Fulvalenes, Fulvenes, and Related Molecules: An ab Initio Study. J Org Chem 1997; 62:2026-2038. [PMID: 11671506 DOI: 10.1021/jo962407l] [Citation(s) in RCA: 91] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ab initio calculations using conventional (HF/6-31G and MP2/6-31G) and density functional theory (B-LYP/6-31G) methods have been used to determine the structures of the [n]fulvene and [n,m]fulvalene (n, m = 3, 5, 7) series of molecules, with particular emphasis on heptafulvalene (n = m = 7: 12). Calculations have also been performed on the parent cycloalkenes: cyclopropene, cyclopentadiene, and cycloheptatriene (1-3, respectively). All the fulvenes (n = 3, 5, 7: 4-6, respectively) and the smaller fulvalenes (n = 3, m= 3, 5, 7: 7-9, respectively, and n = m = 5: 10) are found to be planar. Pentaheptafulvalene (n = 5, m = 7: 11) adopts a very slightly nonplanar C(s)() arrangement of the five- and seven-membered rings. Heptafulvalene (12) is predicted to have an anti-folded C(2)(h)() structure, in accord with the X-ray crystal structure. We propose that the underlying reason for 11 and 12 adopting nonplanar conformations is the proximity of the H(2) and H(2)(') hydrogen atoms which promotes a distortion of the rings away from planarity at the central fulvalenic C=C double bond. In the process, pi-overlap is lost but this is partially regained by pyramidalization of the carbon centers in the seven-membered ring(s). The degree of folding is substantially more pronounced in 12 than in 11. Our calculated dipole moments, pi-electron distributions, bond alternation parameters, and energy comparisons indicate that the unknown smallest fulvalene, triafulvalene (7), is highly destabilized with localized bonding while triapentafulvalene (8), which is also unknown, is predicted to be stabilized and quite delocalized, consistent with Hückel 4n + 2 considerations.
Collapse
Affiliation(s)
- Anthony P. Scott
- Research School of Chemistry, Australian National University, Canberra, ACT 0200, Australia, and Department of Organic Chemistry, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
| | | | | | | | | |
Collapse
|
36
|
|
37
|
Merrill GN, Gronert S, Kass SR. Systematic Study of the Potential Energy Surface for the Base-Induced Elimination Reaction of Fluoride Ion with Ethyl Fluoride Using Density Functional Theory. J Phys Chem A 1997. [DOI: 10.1021/jp962344a] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Grant N. Merrill
- Department of Chemistry and Biochemistry, San Francisco State University, San Francisco, California 94132, and the Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455
| | - Scott Gronert
- Department of Chemistry and Biochemistry, San Francisco State University, San Francisco, California 94132, and the Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455
| | - Steven R. Kass
- Department of Chemistry and Biochemistry, San Francisco State University, San Francisco, California 94132, and the Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455
| |
Collapse
|
38
|
Merrill GN, Kass SR. Calculated Gas-Phase Acidities Using Density Functional Theory: Is It Reliable? ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp961557x] [Citation(s) in RCA: 85] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Grant N. Merrill
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455
| | - Steven R. Kass
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455
| |
Collapse
|
39
|
Wang SG, Schwarz WHE. Simulation of nondynamical correlation in density functional calculations by the optimized fractional orbital occupation approach: Application to the potential energy surfaces of O3 and SO2. J Chem Phys 1996. [DOI: 10.1063/1.472307] [Citation(s) in RCA: 67] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
40
|
Affiliation(s)
| | - James B. Anderson
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802
| |
Collapse
|
41
|
|
42
|
Torrent M, Gili P, Duran M, Solà M. Exploring chromium (VI) dioxodihalides chemistry: Is density functional theory the most suitable tool? J Chem Phys 1996. [DOI: 10.1063/1.471693] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
43
|
Musaev DG, Morokuma K. Structure, Stability, and Bonding of Transition-Metal−Boryl Complexes. A Molecular Orbital Study. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp953143u] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Djamaladdin G. Musaev
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322
| | - Keiji Morokuma
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322
| |
Collapse
|
44
|
Han WG, Suhai S. Density Functional Studies on N-Methylacetamide−Water Complexes. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp952250l] [Citation(s) in RCA: 88] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Wen-Ge Han
- Molecular Biophysics Department, German Cancer Research Center, Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany
| | - Sándor Suhai
- Molecular Biophysics Department, German Cancer Research Center, Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany
| |
Collapse
|
45
|
An assessment of density functional theory on evaluating activation barriers for small organic gas-phase rearrangement reactions. ACTA ACUST UNITED AC 1996. [DOI: 10.1016/0166-1280(95)04406-x] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
46
|
Density functional studies of internal rotation: formamide as a prototype of the peptide bond. J Mol Struct 1996. [DOI: 10.1016/0022-2860(95)09094-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
47
|
VAN SANTEN RUTGERA, NEUROCK MATTHEW. Concepts in Theoretical Heterogeneous Catalytic Reactivity. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 1995. [DOI: 10.1080/01614949508006451] [Citation(s) in RCA: 202] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
48
|
Chong DP. Density‐functional calculation of core‐electron binding energies of C, N, O, and F. J Chem Phys 1995. [DOI: 10.1063/1.469758] [Citation(s) in RCA: 126] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
49
|
|
50
|
|