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Bartsch T, Revuelta F, Benito RM, Borondo F. Finite-barrier corrections for multidimensional barriers in colored noise. Phys Rev E 2019; 99:052211. [PMID: 31212507 DOI: 10.1103/physreve.99.052211] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2018] [Indexed: 06/09/2023]
Abstract
The usual identification of reactive trajectories for the calculation of reaction rates requires very time-consuming simulations, particularly if the environment presents memory effects. In this paper, we develop a method that permits the identification of reactive trajectories in a system under the action of a stochastic colored driving. This method is based on the perturbative computation of the invariant structures that act as separatrices for reactivity. Furthermore, using this perturbative scheme, we have obtained a formally exact expression for the reaction rate in multidimensional systems coupled to colored noisy environments.
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Affiliation(s)
- Thomas Bartsch
- Centre for Nonlinear Mathematics and Applications, Department of Mathematical Sciences, Loughborough University, Loughborough LE11 3TU, England, United Kingdom
| | - F Revuelta
- Grupo de Sistemas Complejos, E. T. S. Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Avenida Puerta de Hierro 2-4, 28040 Madrid, Spain
- Instituto de Ciencias Matemáticas, Cantoblanco, 28049 Madrid, Spain
| | - R M Benito
- Grupo de Sistemas Complejos, E. T. S. Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Avenida Puerta de Hierro 2-4, 28040 Madrid, Spain
| | - F Borondo
- Instituto de Ciencias Matemáticas, Cantoblanco, 28049 Madrid, Spain
- Departamento de Química, Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid, Spain
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2
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Abstract
The generalized Langevin equation is widely used to model the influence of a heat bath upon a reactive system. This equation will here be studied from a geometric point of view. A dynamical phase space that represents all possible states of the system will be constructed, the generalized Langevin equation will be formally rewritten as a pair of coupled ordinary differential equations, and the fundamental geometric structures in phase space will be described. It will be shown that the phase space itself and its geometric structure depend critically on the preparation of the system: A system that is assumed to have been in existence forever has a larger phase space with a simpler structure than a system that is prepared at a finite time. These differences persist even in the long-time limit, where one might expect the details of preparation to become irrelevant.
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Affiliation(s)
- Thomas Bartsch
- Department of Mathematical Sciences, Loughborough University, Loughborough LE11 3TU, United Kingdom.
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Affiliation(s)
- Alexander V. Zhukov
- Department of Physics Education and Department of Physics, Pusan National University, Pusan 609-735, Korea
| | - Sang Wook Kim
- Department of Physics Education and Department of Physics, Pusan National University, Pusan 609-735, Korea
| | - Thomas F. George
- Office of the Chancellor and Center for Nanoscience, Department of Chemistry & Biochemistry and Department of Physics & Astronomy, University of Missouri-St. Louis, St. Louis, Missouri 63121
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Goswami G, Mukherjee B, Bag BC. Colored thermal noise driven dynamical system in the presence and absence of non-equilibrium constraint: time dependence of information entropy flux and entropy production. Chem Phys 2005. [DOI: 10.1016/j.chemphys.2004.11.020] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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5
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Hershkovits E, Hernandez R. Chemical reaction dynamics within anisotropic solvents in time-dependent fields. J Chem Phys 2005; 122:14509. [PMID: 15638676 DOI: 10.1063/1.1829252] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of low-dimensional Brownian particles coupled to time-dependent driven anisotropic heavy particles (mesogens) in a uniform bath (solvent) have been described through the use of a variant of the stochastic Langevin equation. The rotational motion of the mesogens is assumed to follow the motion of an external driving field in the linear response limit. Reaction dynamics have also been probed using a two-state model for the Brownian particles. Analytical expressions for diffusion and reaction rates have been developed and are found to be in good agreement with numerical calculations. When the external field driving the mesogens is held at constant rotational frequency, the model for reaction dynamics predicts that the applied field frequency can be used to control the product composition.
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Affiliation(s)
- Eli Hershkovits
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332-0400, USA
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6
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Valone SM. An extension of transition-state theory for shock-induced chemical kinetics. J Chem Phys 2003. [DOI: 10.1063/1.1557451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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TOLOKH IGORS, WHITE GEORGEWN, GOLDMAN SAUL, GRAY CG. Prediction of ion channel transport from Grote—Hynes and Kramers theories. Mol Phys 2002. [DOI: 10.1080/00268970210124828] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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8
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Martens CC. Qualitative dynamics of generalized Langevin equations and the theory of chemical reaction rates. J Chem Phys 2002. [DOI: 10.1063/1.1436116] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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9
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Ferrando R, Spadacini R, Tommei G. Jump rate and jump lengths in periodic systems with memory. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)01070-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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10
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Hershkovitz E, Hernandez R. Fast Numerical Integrator for Stochastic Differential Equations with Nonstationary Multiplicative Noise. J Phys Chem A 2001. [DOI: 10.1021/jp0037044] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Eli Hershkovitz
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400
| | - Rigoberto Hernandez
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400
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Drozdov AN, Hayashi S. Self-similar renormalization approach to barrier crossing processes. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1999; 60:3804-13. [PMID: 11970215 DOI: 10.1103/physreve.60.3804] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/1999] [Indexed: 04/18/2023]
Abstract
An algebraic self-similar renormalization method developed recently for summation of divergent field-theoretical series is applied to the thermally activated escape of a Brownian particle over an arbitrarily shaped barrier. Based on the Mel'nikov-Meshkov result for the underdamped Brownian motion and the inverse friction expansion of the underlying Fokker-Planck equation for strong friction, an overall rate formula is constructed. This formula agrees in the weak friction regime with the rate obtained from a diffusion equation in energy variables and, in the limiting case of strong friction with the rate following from a Smoluchowski equation. Its validity is tested for Brownian motion in bistable potentials with parabolic, cusped, and quartic barriers of different heights. The proposed formula is found to give a reasonable description of activated rate processes even though the barrier is quite low. Our comparison also includes results from various different crossover theories. In most of the cases considered the present formula is in considerably better agreement with exact numerical rates than the other interpolation formulas.
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Affiliation(s)
- A N Drozdov
- Department of Applied Physics and Chemistry, University of Electro-Communications, Chofu, Tokyo 182-8585
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12
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McDowell HK, Clogston AM. Molecular time scale generalized Langevin equation theory and polynomial maximum entropy imaging of spectral densities. J Chem Phys 1998. [DOI: 10.1063/1.477487] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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13
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Caratti G, Ferrando R, Spadacini R, Tommei G, Zelenskaya I. Resonant diffusion in periodic systems with memory. Chem Phys Lett 1998. [DOI: 10.1016/s0009-2614(98)00543-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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14
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Benjamin I, Pollak E. Variational transition state theory for electron transfer reactions in solution. J Chem Phys 1996. [DOI: 10.1063/1.472743] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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15
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An analytical study of the Berezhkovskii-Pollak-Zitserman theory of rate processes in the critical region. II. The critical coupling plane. Chem Phys 1996. [DOI: 10.1016/s0301-0104(96)00095-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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16
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Berezhkovskii AM, Zitserman VY, Polimeno A. Numerical test of Kramers reaction rate theory in two dimensions. J Chem Phys 1996. [DOI: 10.1063/1.472487] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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17
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Reese SK, Tucker SC. Solvent–solute reaction path curvature effects on energy transfer corrections to the solute reaction rate. J Chem Phys 1996. [DOI: 10.1063/1.472095] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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18
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Truhlar DG, Garrett BC, Klippenstein SJ. Current Status of Transition-State Theory. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp953748q] [Citation(s) in RCA: 1585] [Impact Index Per Article: 56.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Donald G. Truhlar
- Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Bruce C. Garrett
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 902 Battelle Boulevard, MS K1-96, Richland, Washington 99352
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Starobinets A, Rips I, Pollak E. A numerical test of activated rate theories for cusped and smooth potentials. J Chem Phys 1996. [DOI: 10.1063/1.471374] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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Haynes GR, Voth GA. Reaction‐coordinate‐dependent friction in classical activated barrier crossing dynamics: When it matters and when it doesn’t. J Chem Phys 1995. [DOI: 10.1063/1.469920] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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21
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Rips I, Pollak E. Variational transition state theory for curve crossing processes: A uniform rate expression. J Chem Phys 1995. [DOI: 10.1063/1.470209] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Singh S, Wilse Robinson G. An analytical study of the Berezhkovskii-Pollak-Zitserman theory of rate processes in the memory-suppression region. Chem Phys 1995. [DOI: 10.1016/0301-0104(95)00188-t] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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23
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Pollak E. Quantum theory of activated rate processes: A maximum free energy approach. J Chem Phys 1995. [DOI: 10.1063/1.469797] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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24
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Bockris JO, Fletcher S, Gale RJ, Khan SUM, Kolb DM, Mazur DJ, Uosaki K, Weinberg NL. Chapter 3. Electrochemistry (1992–1995). ACTA ACUST UNITED AC 1995. [DOI: 10.1039/pc9959200023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Haynes GR, Voth GA, Pollak E. A theory for the activated barrier crossing rate constant in systems influenced by space and time dependent friction. J Chem Phys 1994. [DOI: 10.1063/1.468274] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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27
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Topaler M, Makri N. Quantum rates for a double well coupled to a dissipative bath: Accurate path integral results and comparison with approximate theories. J Chem Phys 1994. [DOI: 10.1063/1.468244] [Citation(s) in RCA: 257] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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28
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Talkner P, Pollak E. Relationship between variational transition state theory and the Rayleigh quotient method for activated rate processes. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1994; 50:2646-2653. [PMID: 9962303 DOI: 10.1103/physreve.50.2646] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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29
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Abstract
Understanding solution-phase chemistry requires a microscopic description of the electronic structure of the reacting molecules, and of the complex influence of the solvent medium on the reaction energetics and dynamics. Processes involving reactant charge-transfer are of particular importance in chemistry and biochemistry, and are strongly influenced by polar media. Recent advances in experimental ultrafast laser spectroscopy and in computer simulation are working together to provide insight into the underlying molecular principles governing this class of processes in solution.
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Affiliation(s)
- P J Rossky
- Department of Chemistry and Biochemistry, University of Texas at Austin 78712-1167
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30
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Rate processes in dissipative systems: scaling in the canonical variational transition state theory. Chem Phys 1994. [DOI: 10.1016/0301-0104(94)00027-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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31
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Frishman AM, Berezhkovskii AM, Pollak E. Optimized planar dividing surfaces for asymmetric activated-rate processes. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1994; 49:1216-1224. [PMID: 9961329 DOI: 10.1103/physreve.49.1216] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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32
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Messina M, Schenter GK, Garrett BC. Quantum activated rate theory: Variational optimization of planar dividing surfaces. J Chem Phys 1993. [DOI: 10.1063/1.465588] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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