1
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Van Benschoten W, Petras HR, Shepherd JJ. Electronic Free Energy Surface of the Nitrogen Dimer Using First-Principles Finite Temperature Electronic Structure Methods. J Phys Chem A 2023; 127:6842-6856. [PMID: 37535315 PMCID: PMC10440793 DOI: 10.1021/acs.jpca.3c01741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 07/20/2023] [Indexed: 08/04/2023]
Abstract
We use full configuration interaction and density matrix quantum Monte Carlo methods to calculate the electronic free energy surface of the nitrogen dimer within the free-energy Born-Oppenheimer approximation. As the temperature is raised from T = 0, we find a temperature regime in which the internal energy causes bond strengthening. At these temperatures, adding in the entropy contributions is required to cause the bond to gradually weaken with increasing temperature. We predict a thermally driven dissociation for the nitrogen dimer between 22,000 to 63,200 K depending on symmetries and basis set. Inclusion of more spatial and spin symmetries reduces the temperature required. The origin of these observations is explored using the structure of the density matrix at various temperatures and bond lengths.
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Affiliation(s)
| | - Hayley R. Petras
- Department
of Chemistry, University of Iowa, Iowa City, Iowa 52242, United States
| | - James J. Shepherd
- Department
of Chemistry, University of Iowa, Iowa City, Iowa 52242, United States
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2
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Ganeshan K, Khanal R, Muraleedharan MG, Hellström M, Kent PRC, Irle S, van Duin ACT. Importance of Nuclear Quantum Effects on Aqueous Electrolyte Transport under Confinement in Ti 3C 2 MXenes. J Chem Theory Comput 2022; 18:6920-6931. [PMID: 36269878 DOI: 10.1021/acs.jctc.2c00771] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Protons display a high chemical activity and strongly affect the charge storage capability in confined interlayer spaces of two-dimensional (2D) materials. As such, an accurate representation of proton dynamics under confinement is important for understanding and predicting charge storage dynamics in these materials. While often ignored in atomistic-scale simulations, nuclear quantum effects (NQEs), e.g., tunneling, can be significant under confinement even at room temperature. Using the thermostatted ring polymer molecular dynamics implementation of path integral molecular dynamics (PIMD) in conjunction with the ReaxFF force field, density functional tight binding (DFTB), and NequIP neural network potential simulations, we investigate the role of NQEs on proton and water transport in bulk water and aqueous electrolytes under confinement in Ti3C2 MXenes. Although overall NQEs are relatively small, especially in bulk, we find that they can alter both quantitative values and qualitative trends on both proton transport and water self-diffusion under confinement relative to classical MD predictions. Therefore, our results suggest the need for NQEs to be considered to simulate aqueous systems under confinement for both qualitative and quantitative accuracy.
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Affiliation(s)
- Karthik Ganeshan
- Department of Mechanical Engineering, Pennsylvania State University, University Park, Pennsylvania16802, United States
| | - Rabi Khanal
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee37831, United States
| | - Murali Gopal Muraleedharan
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee37831, United States
| | - Matti Hellström
- Software for Chemistry and Materials B.V., Amsterdam1081HV, The Netherlands
| | - Paul R C Kent
- Center for Nanophase Materials Sciences and Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee37831, United States
| | - Stephan Irle
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee37831, United States
| | - Adri C T van Duin
- Department of Mechanical Engineering, Pennsylvania State University, University Park, Pennsylvania16802, United States
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3
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Kawatsu T, Tachikawa M. Quantum fluctuations of a fullerene cage modulate its internal magnetic environment. Phys Chem Chem Phys 2018; 20:1673-1684. [PMID: 29264598 DOI: 10.1039/c7cp06401b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
To investigate the effect of quantum fluctuations on the magnetic environment inside a C60 fullerene cage, we have calculated the nuclear magnetic shielding constant of protons in H2@C60 and HD@C60 systems by on-the-fly ab initio path integral simulation, including both thermal and nuclear quantum effects. The most dominant upfield from an isolated hydrogen molecule occurs due to the diamagnetic current of the C60 cage, which is partly cancelled by the paramagnetic current, where the paramagnetic contribution is enlarged by the zero-point vibrational fluctuation of the C60 carbon backbone structure via a widely distributed HOMO-LUMO gap. This quantum modulation mechanism of the nuclear magnetic shielding constant is newly proposed. Because this quantum effect is independent of the difference between H2 and HD, the H2/HD isotope shift occurs in spite of the C60 cage. The nuclear magnetic constants computed for H2@C60 and HD@C60 are 32.047 and 32.081 ppm, respectively, which are in reasonable agreement with the corresponding values of 32.19 and 32.23 ppm estimated from the experimental values of the chemical shifts.
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Affiliation(s)
- Tsutomu Kawatsu
- Graduate School of Nanobioscience, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, Japan.
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4
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Shigeta Y, Harada R, Sato R, Kitoh-Nishioka H, Bui TKM, Sato A, Tokiwa T, Kyan A, Ishii Y, Kimatsuka M, Yamasaki S, Kayanuma M, Shoji M. Classical cumulant dynamics for statistical chemical physics. MOLECULAR SIMULATION 2017. [DOI: 10.1080/08927022.2017.1315770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Yasuteru Shigeta
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Ryuhei Harada
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Ryuma Sato
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | | | - Thi Kieu My Bui
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Akimasa Sato
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Takaki Tokiwa
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Akane Kyan
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Yuki Ishii
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Masato Kimatsuka
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Sotaro Yamasaki
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Megumi Kayanuma
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Mitsuo Shoji
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
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5
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Nagashima H, Tsuda S, Tsuboi N, Hayashi AK, Tokumasu T. A molecular dynamics study of nuclear quantum effect on diffusivity of hydrogen molecule. J Chem Phys 2017; 147:024501. [PMID: 28711051 DOI: 10.1063/1.4991732] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this paper, the nuclear quantum effect of the hydrogen molecule on its diffusivity was analyzed using the molecular dynamics (MD) method. The centroid MD (CMD) method was applied to reproduce the time evolution of the molecules. The diffusion coefficient of hydrogen was calculated using the Green-Kubo method over a wide temperature region, and the temperature dependence of the quantum effect of the hydrogen molecule on its diffusivity was addressed. The calculated results were compared with classical MD results based on the principle of corresponding state (PCS). It was confirmed that the difference in the diffusion coefficient calculated in the CMD and classical MD methods was small, and the PCS appears to be satisfied on the temperature dependence of the diffusion coefficient, even though the quantum effect of the hydrogen molecules was taken into account. It was clarified that this result did not suggest that the quantum effect on the diffusivity of the hydrogen molecule was small but that the two changes in the intermolecular interaction of hydrogen due to the quantum effect offset each other. Moreover, it was found that this tendency was related to the temperature dependence of the ratio of the kinetic energy of the quantum fluctuational motion to the classical kinetic energy.
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Affiliation(s)
- H Nagashima
- Department of Mechanical Systems Engineering, University of the Ryukuys, Okinawa, Senbaru, Nishihara-cho, Okinawa 903-0213, Japan
| | - S Tsuda
- Department of Mechanical Engineering, Kyushu University, Fukuoka 819-0395, Japan
| | - N Tsuboi
- Department of Mechanical and Control Engineering, Kyushu Institute of Technology, Kitakyushu 804-8550, Japan
| | - A K Hayashi
- Department of Mechanical Engineering, Aoyama Gakuin University, Sagamihara 229-8558, Japan
| | - T Tokumasu
- Institute of Fluid Science, Tohoku University, Sendai 980-8577, Japan
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6
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Stokes PW, Philippa B, Cocks D, White RD. Generalized balance equations for charged particle transport via localized and delocalized states: Mobility, generalized Einstein relations, and fractional transport. Phys Rev E 2017; 95:042119. [PMID: 28505754 DOI: 10.1103/physreve.95.042119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Indexed: 11/07/2022]
Abstract
A generalized phase-space kinetic Boltzmann equation for highly nonequilibrium charged particle transport via localized and delocalized states is used to develop continuity, momentum, and energy balance equations, accounting explicitly for scattering, trapping and detrapping, and recombination loss processes. Analytic expressions detail the effect of these microscopic processes on mobility and diffusivity. Generalized Einstein relations (GER) are developed that enable the anisotropic nature of diffusion to be determined in terms of the measured field dependence of the mobility. Interesting phenomena such as negative differential conductivity and recombination heating and cooling are shown to arise from recombination loss processes and the localized and delocalized nature of transport. Fractional transport emerges naturally within this framework through the appropriate choice of divergent mean waiting time distributions for localized states, and fractional generalizations of the GER and mobility are presented. Signature impacts on time-of-flight current transients of recombination loss processes via both localized and delocalized states are presented.
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Affiliation(s)
- Peter W Stokes
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Bronson Philippa
- College of Science and Engineering, James Cook University, Cairns, QLD 4870, Australia
| | - Daniel Cocks
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Ronald D White
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
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7
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Karandashev K, Vaníček J. Accelerating equilibrium isotope effect calculations. I. Stochastic thermodynamic integration with respect to mass. J Chem Phys 2017. [DOI: 10.1063/1.4981260] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Affiliation(s)
- Konstantin Karandashev
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jiří Vaníček
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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8
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Oba Y, Kawatsu T, Tachikawa M. A path integral molecular dynamics study of the hyperfine coupling constants of the muoniated and hydrogenated acetone radicals. J Chem Phys 2016. [DOI: 10.1063/1.4960077] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Affiliation(s)
- Yuki Oba
- Quantum Chemistry Division, Yokohama City University, Seto 22-2, Kanazawa-ku, Yokohama 236-0027, Japan
| | - Tsutomu Kawatsu
- Quantum Chemistry Division, Yokohama City University, Seto 22-2, Kanazawa-ku, Yokohama 236-0027, Japan
| | - Masanori Tachikawa
- Quantum Chemistry Division, Yokohama City University, Seto 22-2, Kanazawa-ku, Yokohama 236-0027, Japan
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9
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Can low-barrier hydrogen bond exist in systems with second row elements? An ab initio path integral molecular dynamics study for deprotonated hydrogen sulfide dimer. Theor Chem Acc 2016. [DOI: 10.1007/s00214-016-1958-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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10
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Liu J, Li D, Liu X. A simple and accurate algorithm for path integral molecular dynamics with the Langevin thermostat. J Chem Phys 2016; 145:024103. [DOI: 10.1063/1.4954990] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jian Liu
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Dezhang Li
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Xinzijian Liu
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
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11
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Stokes PW, Philippa B, Cocks D, White RD. Solution of a generalized Boltzmann's equation for nonequilibrium charged-particle transport via localized and delocalized states. Phys Rev E 2016; 93:032119. [PMID: 27078304 DOI: 10.1103/physreve.93.032119] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2015] [Indexed: 11/07/2022]
Abstract
We present a general phase-space kinetic model for charged-particle transport through combined localized and delocalized states, capable of describing scattering collisions, trapping, detrapping, and losses. The model is described by a generalized Boltzmann equation, for which an analytical solution is found in Fourier-Laplace space. The velocity of the center of mass and the diffusivity about it are determined analytically, together with the flux transport coefficients. Transient negative values of the free particle center-of-mass transport coefficients can be observed due to the trapping to, and detrapping from, localized states. A Chapman-Enskog-type perturbative solution technique is applied, confirming the analytical results and highlighting the emergence of a density gradient representation in the weak-gradient hydrodynamic regime. A generalized diffusion equation with a unique global time operator is shown to arise, reducing to the standard diffusion equation and a Caputo fractional diffusion equation in the normal and dispersive limits. A subordination transformation is used to solve the generalized diffusion equation by mapping from the solution of a corresponding standard diffusion equation.
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Affiliation(s)
- Peter W Stokes
- College of Science, Technology and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Bronson Philippa
- College of Science, Technology and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Daniel Cocks
- College of Science, Technology and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Ronald D White
- College of Science, Technology and Engineering, James Cook University, Townsville, QLD 4811, Australia
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12
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13
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Nava M, Quhe R, Palazzesi F, Tiwary P, Parrinello M. de Broglie Swapping Metadynamics for Quantum and Classical Sampling. J Chem Theory Comput 2015; 11:5114-9. [DOI: 10.1021/acs.jctc.5b00818] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marco Nava
- Department
of Chemistry and Applied Biosciences, ETH Zurich, and Facoltà
di Informatica, Istituto di Scienze Computazionali, Università della Svizzera Italiana, Via G. Buffi 13, 6900 Lugano, Ticino, Switzerland
| | - Ruge Quhe
- Department
of Chemistry and Applied Biosciences, ETH Zurich, and Facoltà
di Informatica, Istituto di Scienze Computazionali, Università della Svizzera Italiana, Via G. Buffi 13, 6900 Lugano, Ticino, Switzerland
- State Key Laboratory of Information Photonics and Optical Communications & School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Ferruccio Palazzesi
- Department
of Chemistry and Applied Biosciences, ETH Zurich, and Facoltà
di Informatica, Istituto di Scienze Computazionali, Università della Svizzera Italiana, Via G. Buffi 13, 6900 Lugano, Ticino, Switzerland
| | - Pratyush Tiwary
- Department
of Chemistry and Applied Biosciences, ETH Zurich, and Facoltà
di Informatica, Istituto di Scienze Computazionali, Università della Svizzera Italiana, Via G. Buffi 13, 6900 Lugano, Ticino, Switzerland
- Department
of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - Michele Parrinello
- Department
of Chemistry and Applied Biosciences, ETH Zurich, and Facoltà
di Informatica, Istituto di Scienze Computazionali, Università della Svizzera Italiana, Via G. Buffi 13, 6900 Lugano, Ticino, Switzerland
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14
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Engel H, Eitan R, Azuri A, Major DT. Nuclear quantum effects in chemical reactions via higher-order path-integral calculations. Chem Phys 2015. [DOI: 10.1016/j.chemphys.2015.01.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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15
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Nuclear quantum effect and temperature dependency on the hydrogen-bonded structure of 7-azaindole dimer. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1553-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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16
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Peng Y, Cao Z, Zhou R, Voth GA. Path Integral Coarse-Graining Replica Exchange Method for Enhanced Sampling. J Chem Theory Comput 2014; 10:3634-40. [DOI: 10.1021/ct500447r] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuxing Peng
- Department
of Chemistry, James Franck Institute, and Computation Institute, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Zhen Cao
- Department
of Chemistry, James Franck Institute, and Computation Institute, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Ruhong Zhou
- Computational
Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York 10598, United States
| | - Gregory A. Voth
- Department
of Chemistry, James Franck Institute, and Computation Institute, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
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17
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Nagashima H, Tsuda S, Tsuboi N, Koshi M, Hayashi KA, Tokumasu T. An analysis of quantum effects on the thermodynamic properties of cryogenic hydrogen using the path integral method. J Chem Phys 2014; 140:134506. [DOI: 10.1063/1.4870036] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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18
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O'Callaghan M, Miller BN. Path integral Monte Carlo on a lattice: extended states. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:042124. [PMID: 24827210 DOI: 10.1103/physreve.89.042124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Indexed: 06/03/2023]
Abstract
The equilibrium properties of a single quantum particle (qp) interacting with a classical gas for a wide range of temperatures that explore the system's behavior in the classical as well as in the quantum regime is investigated. Both the qp and atoms are restricted to the sites of a one-dimensional lattice. A path integral formalism is developed within the context of the canonical ensemble in which the qp is represented by a closed, variable-step random walk on the lattice. Monte Carlo methods are employed to determine the system's properties. For the case of a free particle, analytical expressions for the energy, its fluctuations, and the qp-qp correlation function are derived and compared with the Monte Carlo simulations. To test the usefulness of the path integral formalism, the Metropolis algorithm is employed to determine the equilibrium properties of the qp for a periodic interaction potential, forcing the qp to occupy extended states. We consider a striped potential in one dimension, where every other lattice site is occupied by an atom with potential ε, and every other lattice site is empty. This potential serves as a stress test for the path integral formalism because of its rapid site-to-site variation. An analytical solution was determined in this case by utilizing Bloch's theorem due to the periodicity of the potential. Comparisons of the potential energy, the total energy, the energy fluctuations, and the correlation function are made between the results of the Monte Carlo simulations and the analytical calculations.
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Affiliation(s)
| | - Bruce N Miller
- Texas Christian University, Fort Worth, Texas 76129, USA
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19
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Shim S, Aspuru-Guzik A. Path integral Monte Carlo with importance sampling for excitons interacting with an arbitrary phonon bath. J Chem Phys 2012; 137:22A538. [DOI: 10.1063/1.4751487] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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20
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DOLTSINIS NIKOSL, MARX DOMINIK. FIRST PRINCIPLES MOLECULAR DYNAMICS INVOLVING EXCITED STATES AND NONADIABATIC TRANSITIONS. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2012. [DOI: 10.1142/s0219633602000257] [Citation(s) in RCA: 126] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Extensions of traditional molecular dynamics to excited electronic states and non-Born–Oppenheimer dynamics are reviewed focusing on applicability to chemical reactions of large molecules, possibly in condensed phases. The latter imposes restrictions on both the level of accuracy of the underlying electronic structure theory and the treatment of nonadiabaticity. This review, therefore, exclusively deals with ab initio "on the fly" molecular dynamics methods. For the same reason, mainly mixed quantum-classical approaches to nonadiabatic dynamics are considered.
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Affiliation(s)
- NIKOS L. DOLTSINIS
- Lehrstuhl für Theoretische Chemie, Ruhr–Universität Bochum, 44780 Bochum, Germany
| | - DOMINIK MARX
- Lehrstuhl für Theoretische Chemie, Ruhr–Universität Bochum, 44780 Bochum, Germany
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21
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Azuri A, Engel H, Doron D, Major DT. Path-Integral Calculations of Nuclear Quantum Effects in Model Systems, Small Molecules, and Enzymes via Gradient-Based Forward Corrector Algorithms. J Chem Theory Comput 2011; 7:1273-86. [DOI: 10.1021/ct100716c] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Asaf Azuri
- Department of Chemistry and the Lise Meitner-Minerva Center of Computational Quantum Chemistry, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Hamutal Engel
- Department of Chemistry and the Lise Meitner-Minerva Center of Computational Quantum Chemistry, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Dvir Doron
- Department of Chemistry and the Lise Meitner-Minerva Center of Computational Quantum Chemistry, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Dan Thomas Major
- Department of Chemistry and the Lise Meitner-Minerva Center of Computational Quantum Chemistry, Bar-Ilan University, Ramat-Gan 52900, Israel
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22
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Abstract
Using the path integral centroid approach, we investigate dispersion interactions between electrons solvated in metal-ammonia solutions. We have argued that at finite metal concentrations, the behavior of the solvated electrons is controlled by these interactions. The latter result in a peculiar nonmetal-metal transition, which appears as a sharp dielectric enhancement and a mechanical instability of the system. Our results indicate also that the solvated electrons are to be considered as a two-component mixture consisting of localized and delocalized electrons beyond the critical density corresponding to this mechanical instability.
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Affiliation(s)
- Gennady N Chuev
- Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig 04103, Germany.
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23
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Vladimirov E, Ivanova A, Rösch N. Effect of solvent polarization on the reorganization energy of electron transfer from molecular dynamics simulations. J Chem Phys 2008; 129:194515. [DOI: 10.1063/1.3013456] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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24
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Schmidt JR, Tully JC. Path-integral simulations beyond the adiabatic approximation. J Chem Phys 2007; 127:094103. [PMID: 17824728 DOI: 10.1063/1.2757170] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Within the adiabatic approximation, it is trivial to generalize existing imaginary time path-integral techniques to the case of multiple electronic surfaces. However, there are many times where nonadiabatic effects can play an important role. To this end, we reformulate the well-known path-integral expressions to incorporate multiple potential surfaces, without necessitating the adiabatic approximation. We show that the resulting expression, like its adiabatic counterpart, can be interpreted in terms of a simple classical isomorphic system and thus is amenable to simulation through Monte Carlo techniques. We derive simple expressions to compute expectation values of a general operator in both the nuclear coordinate and electronic state, and demonstrate the existence of a simple internal diagnostic that can be used to evaluate the magnitude of equilibrium nonadiabatic effects.
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Affiliation(s)
- J R Schmidt
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, USA
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25
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Voth GA. Path-Integral Centroid Methods in Quantum Statistical Mechanics and Dynamics. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141526.ch4] [Citation(s) in RCA: 126] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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26
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Wang Q, Hammes-Schiffer S. Hybrid quantum/classical path integral approach for simulation of hydrogen transfer reactions in enzymes. J Chem Phys 2006; 125:184102. [PMID: 17115733 DOI: 10.1063/1.2362823] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
A hybrid quantum/classical path integral Monte Carlo (QC-PIMC) method for calculating the quantum free energy barrier for hydrogen transfer reactions in condensed phases is presented. In this approach, the classical potential of mean force along a collective reaction coordinate is calculated using umbrella sampling techniques in conjunction with molecular dynamics trajectories propagated according to a mapping potential. The quantum contribution is determined for each configuration along the classical trajectory with path integral Monte Carlo calculations in which the beads move according to an effective mapping potential. This type of path integral calculation does not utilize the centroid constraint and can lead to more efficient sampling of the relevant region of conformational space than free-particle path integral sampling. The QC-PIMC method is computationally practical for large systems because the path integral sampling for the quantum nuclei is performed separately from the classical molecular dynamics sampling of the entire system. The utility of the QC-PIMC method is illustrated by an application to hydride transfer in the enzyme dihydrofolate reductase. A comparison of this method to the quantized classical path and grid-based methods for this system is presented.
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Affiliation(s)
- Qian Wang
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
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27
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Hone TD, Rossky PJ, Voth GA. A comparative study of imaginary time path integral based methods for quantum dynamics. J Chem Phys 2006; 124:154103. [PMID: 16674214 DOI: 10.1063/1.2186636] [Citation(s) in RCA: 117] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The recently introduced approximate many-body quantum simulation method, ring polymer molecular dynamics (RPMD), is compared to the centroid molecular dynamics method (CMD). Comparisons of simulation results for liquid para-hydrogen at two state points and liquid ortho-deuterium at one state point are presented. The calculated quantum correlation functions for the two methods are shown to be in good agreement with one another for a large portion of the time spectrum. However, as the quantum mechanical nature of the system increases, RPMD is less accurate in predicting the kinetic energy of the system than is CMD. A simplified and highly efficient algorithm is proposed which largely corrects this deficiency.
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Affiliation(s)
- Tyler D Hone
- Institute for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712, USA
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28
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Matyushov DV. Solvent reorganization energy of electron-transfer reactions in polar solvents. J Chem Phys 2004; 120:7532-56. [PMID: 15267667 DOI: 10.1063/1.1676122] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A microscopic theory of solvent reorganization energy in polar molecular solvents is developed. The theory represents the solvent response as a combination of the density and polarization fluctuations of the solvent given in terms of the density and polarization structure factors. A fully analytical formulation of the theory is provided for a solute of arbitrary shape with an arbitrary distribution of charge. A good agreement between the analytical procedure and the results of Monte Carlo simulations of model systems is achieved. The reorganization energy splits into the contributions from density fluctuations and polarization fluctuations. The polarization part is dominated by longitudinal polarization response. The density part is inversely proportional to temperature. The dependence of the solvent reorganization energy on the solvent dipole moment and refractive index is discussed.
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Affiliation(s)
- Dmitry V Matyushov
- Department of Chemistry and Biochemistry and the Center for the Early Events in Photosynthesis, Arizona State University, Tempe, Arizona 85287-1604, USA.
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Gupta S, Matyushov DV. Effects of Solvent and Solute Polarizability on the Reorganization Energy of Electron Transfer. J Phys Chem A 2004. [DOI: 10.1021/jp036388c] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shikha Gupta
- Department of Chemistry and Biochemistry and the Center for the Study of Early Events in Photosynthesis, Arizona State University, PO Box 871604, Tempe, Arizona 85287-1604
| | - Dmitry V. Matyushov
- Department of Chemistry and Biochemistry and the Center for the Study of Early Events in Photosynthesis, Arizona State University, PO Box 871604, Tempe, Arizona 85287-1604
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30
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Glaesemann KR, Fried LE. Improved heat capacity estimator for path integral simulations. J Chem Phys 2002. [DOI: 10.1063/1.1493184] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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31
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Glaesemann KR, Fried LE. An improved thermodynamic energy estimator for path integral simulations. J Chem Phys 2002. [DOI: 10.1063/1.1460861] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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32
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Böhm MC, Schulte J, Ramírez R. Excited State Properties of C6H6 and C6D6 Studied by Feynman Path Integral−ab Initio Simulations. J Phys Chem A 2002. [DOI: 10.1021/jp013483h] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Michael C. Böhm
- Institut für Physikalische Chemie, Physikalische Chemie III, Technische Universität Darmstadt, Petersenstr. 20, D-64287 Darmstadt, Germany
| | - Joachim Schulte
- Bruker Analytik GmbH, Silberstreifen, D-76287 Rheinstetten, Germany
| | - Rafael Ramírez
- Instituto de Ciencia de Materiales, Consejo Superior de Investigaciones Cientifícas, Campus Cantoblanco, E−28049 Madrid, Spain
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33
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Alexander MH. Path-integral simulation of finite-temperature properties of systems involving multiple, coupled electronic states. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)01012-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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34
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Matyushov DV, Voth GA. Reorganization Parameters of Electronic Transitions in Electronically Delocalized Systems. 2. Optical Spectra. J Phys Chem A 2000. [DOI: 10.1021/jp9938866] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Dmitry V. Matyushov
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112
| | - Gregory A. Voth
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112
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35
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Balog E, Hughes AL, Martyna GJ. Constant pressure path integral molecular dynamics studies of quantum effects in the liquid state properties of n-alkanes. J Chem Phys 2000. [DOI: 10.1063/1.480614] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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36
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Matyushov DV, Voth GA. A Theory of Electron Transfer and Steady-State Optical Spectra of Chromophores with Varying Electronic Polarizability. J Phys Chem A 1999. [DOI: 10.1021/jp991246x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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37
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Martyna GJ, Hughes A, Tuckerman ME. Molecular dynamics algorithms for path integrals at constant pressure. J Chem Phys 1999. [DOI: 10.1063/1.478193] [Citation(s) in RCA: 164] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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38
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Miura S, Tuckerman ME, Klein ML. An ab initio path integral molecular dynamics study of double proton transfer in the formic acid dimer. J Chem Phys 1998. [DOI: 10.1063/1.477147] [Citation(s) in RCA: 100] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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39
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Weht RO, Kohanoff J, Estrin DA, Chakravarty C. An ab initio path integral Monte Carlo simulation method for molecules and clusters: Application to Li4 and Li5+. J Chem Phys 1998. [DOI: 10.1063/1.476331] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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40
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Benjamin I, Evans D, Nitzan A. Electron tunneling through water layers: Effect of layer structure and thickness. J Chem Phys 1997. [DOI: 10.1063/1.474079] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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41
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Mosyak A, Graf P, Benjamin I, Nitzan A. Electron Tunneling through Water Layers: Effect of Polarizability. J Phys Chem A 1997. [DOI: 10.1021/jp961745n] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alex Mosyak
- School of Chemistry, The Raymond and Beverly Sackler Faculty of Science, Tel Aviv University, Tel Aviv 69978, Israel
| | - Peter Graf
- School of Chemistry, The Raymond and Beverly Sackler Faculty of Science, Tel Aviv University, Tel Aviv 69978, Israel
| | - Ilan Benjamin
- School of Chemistry, The Raymond and Beverly Sackler Faculty of Science, Tel Aviv University, Tel Aviv 69978, Israel
| | - Abraham Nitzan
- School of Chemistry, The Raymond and Beverly Sackler Faculty of Science, Tel Aviv University, Tel Aviv 69978, Israel
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42
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Cao J, Martyna GJ. Adiabatic path integral molecular dynamics methods. II. Algorithms. J Chem Phys 1996. [DOI: 10.1063/1.470959] [Citation(s) in RCA: 102] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Bader JS, Berne BJ. Solvation energies and electronic spectra in polar, polarizable media: Simulation tests of dielectric continuum theory. J Chem Phys 1996. [DOI: 10.1063/1.470787] [Citation(s) in RCA: 87] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Tuckerman ME, Ungar PJ, von Rosenvinge T, Klein ML. Ab InitioMolecular Dynamics Simulations. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp960480+] [Citation(s) in RCA: 158] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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46
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Cao J, Voth GA. Modeling physical systems by effective harmonic oscillators: The optimized quadratic approximation. J Chem Phys 1995. [DOI: 10.1063/1.469207] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Cao J, Voth GA. The formulation of quantum statistical mechanics based on the Feynman path centroid density. IV. Algorithms for centroid molecular dynamics. J Chem Phys 1994. [DOI: 10.1063/1.468399] [Citation(s) in RCA: 266] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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48
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Cao J, Berne BJ. Theory and simulation of polar and nonpolar polarizable fluids. J Chem Phys 1993. [DOI: 10.1063/1.465446] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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