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Cohen SR, Plazanet M, Rols S, Voneshen DJ, Fourkas JT, Coasne B. Structure and dynamics of acetonitrile: Molecular simulation and neutron scattering. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Ishizuka R, Yoshida N. Extended molecular Ornstein-Zernike integral equation for fully anisotropic solute molecules: Formulation in a rectangular coordinate system. J Chem Phys 2013; 139:084119. [DOI: 10.1063/1.4819211] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
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3
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Chuev GN, Fedorov MV. Reference interaction site model study of self-aggregating cyanine dyes. J Chem Phys 2009; 131:074503. [DOI: 10.1063/1.3211948] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Yokogawa D, Sato H, Imai T, Sakaki S. A highly parallelizable integral equation theory for three dimensional solvent distribution function: Application to biomolecules. J Chem Phys 2009; 130:064111. [DOI: 10.1063/1.3077209] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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5
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Yokogawa D, Sato H, Sakaki S. A new method to reconstruct three-dimensional spatial distribution function from radial distribution function in solvation structure. J Chem Phys 2005; 123:211102. [PMID: 16356029 DOI: 10.1063/1.2137695] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Three-dimensional spatial distribution function (SDF) of solvent is a fundamental quantity for analysis of solvation. However, its calculation has been very limited because long computational time is required. We here developed a novel and robust method to construct approximated SDFs of solvent sites from radial distribution functions. In this method, the expansion of SDFs in real solid harmonics around atoms of solute leads to a linear equation, from which SDFs are evaluated with reasonable computational time. This method is applied to the analysis of the solvation structure of liquid water, as an example. The successful results clearly show that this method is very powerful to investigate solvation structure.
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Affiliation(s)
- Daisuke Yokogawa
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
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Veglio N, Bermejo FJ, Pardo LC, Tamarit JL, Cuello GJ. Direct experimental assessment of the strength of orientational correlations in polar liquids. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 72:031502. [PMID: 16241439 DOI: 10.1103/physreve.72.031502] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2004] [Revised: 01/26/2005] [Indexed: 05/05/2023]
Abstract
The strength of molecular orientational correlations in polar liquids is assessed by means of comparison of the diffuse scattering patterns of a liquid composed by molecules devoid of permanent electric dipole but having a weak quadrupole moment and those for a liquid composed by permanent molecular dipoles. The extent of orientational correlations within the liquid phases is in both cases assessed by comparison of the liquid radial distributions to those present in the rotator-phase (plastic) crystal phases of both compounds. For such disordered-crystal phases, information concerning orientational correlations is directly derived from the experimental scattering patterns by means of analysis of the diffuse scattering background present beneath the Bragg peaks. The results show that rather than long-ranged, orientational correlations in polar or polarizable liquids are confined within distances comprising the second coordination sphere.
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Affiliation(s)
- N Veglio
- CSIC-Department of Electricity and Electronics, University of the Basque Country, P.O. Box 664, 48080 Bilbao, Spain
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Chuev GN, Fedorov MV. Wavelet algorithm for solving integral equations of molecular liquids. A test for the reference interaction site model. J Comput Chem 2004; 25:1369-77. [PMID: 15185331 DOI: 10.1002/jcc.20068] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
A new efficient method is developed for solving integral equations based on the reference interaction site model (RISM) of molecular liquids. The method proposes the expansion of site-site correlation functions into the wavelet series and further calculations of the approximating coefficients. To solve the integral equations we have applied the hybrid scheme in which the coarse part of the solution is calculated by wavelets with the use of the Newton-Raphson procedure, while the fine part is evaluated by the direct iterations. The Coifman 2 basis set is employed for the wavelet treatment of the coarse solution. This wavelet basis set provides compact and accurate approximation of site-site correlation functions so that the number of basis functions and the amplitude of the fine part of solution decrease sufficiently with respect to those obtained by the conventional scheme. The efficiency of the method is tested by calculations of SPC/E model of water. The results indicated that the total CPU time to obtain solution by the proposed procedure reduces to 20% of that required for the conventional hybrid method.
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Affiliation(s)
- Gennady N Chuev
- Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
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GRAY-WEALE ANGUS, MADDEN PAULA. Theoretical calculation of the structure of a polarizable-ionic fluid. Mol Phys 2003. [DOI: 10.1080/0026897031000092292] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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12
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Paci I, Dunford J, Cann NM. Role of achiral interactions on discrimination in racemates. J Chem Phys 2003. [DOI: 10.1063/1.1562609] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Fischer R, Richardi J, Fries PH, Krienke H. The solvation of ions in acetonitrile and acetone. II. Monte Carlo simulations using polarizable solvent models. J Chem Phys 2002. [DOI: 10.1063/1.1512281] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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14
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Jorge S, Lomba E, Abascal JLF. An inhomogeneous integral equation for the triplet structure of binary liquids. J Chem Phys 2001. [DOI: 10.1063/1.1342813] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Rast S, Belorizky E, Fries PH, Travers JP. Mechanisms of the Intermolecular Nuclear Magnetic Relaxation Dispersion of the (CH3)4N+ Protons in Gd3+ Heavy-Water Solutions. Interest for the Theory of Magnetic Resonance Imaging. J Phys Chem B 2001. [DOI: 10.1021/jp003686q] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- S. Rast
- Laboratoire de Reconnaissance Ionique, Service de Chimie Inorganique et Biologique (UMR 5046), Département de Recherche Fondamentale sur la Matière Condensée, CEA-Grenoble, F-38054 Grenoble Cédex 9, France, Laboratoire de Spectrométrie Physique, CNRS-UMR 5588, Université Joseph Fourier, BP 87, F-38402 Saint-Martin d'Hères Cédex, France, and Laboratoire Physique des Métaux Synthétiques, Service des Interfaces et des Matériaux Moléculaires et Macromoléculaires, Département de Recherche Fondamentale sur la
| | - E. Belorizky
- Laboratoire de Reconnaissance Ionique, Service de Chimie Inorganique et Biologique (UMR 5046), Département de Recherche Fondamentale sur la Matière Condensée, CEA-Grenoble, F-38054 Grenoble Cédex 9, France, Laboratoire de Spectrométrie Physique, CNRS-UMR 5588, Université Joseph Fourier, BP 87, F-38402 Saint-Martin d'Hères Cédex, France, and Laboratoire Physique des Métaux Synthétiques, Service des Interfaces et des Matériaux Moléculaires et Macromoléculaires, Département de Recherche Fondamentale sur la
| | - P. H. Fries
- Laboratoire de Reconnaissance Ionique, Service de Chimie Inorganique et Biologique (UMR 5046), Département de Recherche Fondamentale sur la Matière Condensée, CEA-Grenoble, F-38054 Grenoble Cédex 9, France, Laboratoire de Spectrométrie Physique, CNRS-UMR 5588, Université Joseph Fourier, BP 87, F-38402 Saint-Martin d'Hères Cédex, France, and Laboratoire Physique des Métaux Synthétiques, Service des Interfaces et des Matériaux Moléculaires et Macromoléculaires, Département de Recherche Fondamentale sur la
| | - J. P. Travers
- Laboratoire de Reconnaissance Ionique, Service de Chimie Inorganique et Biologique (UMR 5046), Département de Recherche Fondamentale sur la Matière Condensée, CEA-Grenoble, F-38054 Grenoble Cédex 9, France, Laboratoire de Spectrométrie Physique, CNRS-UMR 5588, Université Joseph Fourier, BP 87, F-38402 Saint-Martin d'Hères Cédex, France, and Laboratoire Physique des Métaux Synthétiques, Service des Interfaces et des Matériaux Moléculaires et Macromoléculaires, Département de Recherche Fondamentale sur la
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Fries PH, Richardi J. The solution of the Wertheim association theory for molecular liquids: Application to hydrogen fluoride. J Chem Phys 2000. [DOI: 10.1063/1.1319172] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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17
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Richardi J, Fries PH, Soetens JC. A generalized self-consistent mean-field theory for fluids of molecules with distributed polarizabilities: Comparisons with computer simulations. J Mol Liq 2000. [DOI: 10.1016/s0167-7322(00)00141-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Jorge S, Kahl G, Lomba E, Abascal JLF. On the triplet structure of binary liquids. J Chem Phys 2000. [DOI: 10.1063/1.1287337] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16 Ionic fluids. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s1874-5644(00)80006-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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RICHARDI JOHANNES, FRIES PASCALH, KRIENKE HARTMUT. Influence of the intermolecular electrostatic potential on properties of polar polarizable aprotic solvents. Mol Phys 1999. [DOI: 10.1080/00268979909483085] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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22
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González MA, Enciso E, Bermejo FJ, Bée M. Ethanol force fields: A molecular dynamics study of polarization effects on different phases. J Chem Phys 1999. [DOI: 10.1063/1.478706] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Jedlovszky P, Richardi J. Comparison of different water models from ambient to supercritical conditions: A Monte Carlo simulation and molecular Ornstein–Zernike study. J Chem Phys 1999. [DOI: 10.1063/1.478704] [Citation(s) in RCA: 83] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Richardi J, Millot C, Fries PH. A molecular Ornstein–Zernike study of popular models for water and methanol. J Chem Phys 1999. [DOI: 10.1063/1.478171] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Lombardero M, Martı́n C, Jorge S, Lado F, Lomba E. An integral equation study of a simple point charge model of water. J Chem Phys 1999. [DOI: 10.1063/1.478156] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Richardi J, Fries PH, Krienke H. Liquid Properties of Tetrahydrofuran and Methylene Chloride via the Molecular Hypernetted Chain Approximation. J Phys Chem B 1998. [DOI: 10.1021/jp9802681] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. Richardi
- Universität Regensburg, Institut für Physikalische und Theoretische Chemie, D-93040 Regensburg, Germany, and CEA/Grenoble, Département de Recherche Fondamentale sur la Matière Condensée, SCIB/RI, 17 Rue des Martyrs, 38054 Grenoble Cedex 9, France
| | - P. H. Fries
- Universität Regensburg, Institut für Physikalische und Theoretische Chemie, D-93040 Regensburg, Germany, and CEA/Grenoble, Département de Recherche Fondamentale sur la Matière Condensée, SCIB/RI, 17 Rue des Martyrs, 38054 Grenoble Cedex 9, France
| | - H. Krienke
- Universität Regensburg, Institut für Physikalische und Theoretische Chemie, D-93040 Regensburg, Germany, and CEA/Grenoble, Département de Recherche Fondamentale sur la Matière Condensée, SCIB/RI, 17 Rue des Martyrs, 38054 Grenoble Cedex 9, France
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J. RICHARDI P. H. FRIES R. FISCHER. Liquid acetone and chloroform: a comparison between Monte Carlo simulation, molecular Ornstein-Zernike theory, and site-site Ornstein-Zernike theory. Mol Phys 1998. [DOI: 10.1080/002689798168628] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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28
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Richardi J, Fries PH, Krienke H. The solvation of ions in acetonitrile and acetone: A molecular Ornstein–Zernike study. J Chem Phys 1998. [DOI: 10.1063/1.475805] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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29
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Structure and thermodynamics of liquid acetonitrile via Monte Carlo simulation and Ornstein-Zernike theories. J Mol Liq 1997. [DOI: 10.1016/s0167-7322(97)00089-5] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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30
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Dielectric constants of liquid formamide, N-methylformamide and dimethylformamide via molecular Ornstein-Zernike theory. Chem Phys Lett 1997. [DOI: 10.1016/s0009-2614(97)00588-5] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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31
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Anta JA, Lomba E, Alvarez M, Lombardero M, Martín C. Gas−Liquid Coexistence Properties from Reference Hypernetted Chain Theory for Linear Polar Solvents. J Phys Chem B 1997. [DOI: 10.1021/jp9629708] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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32
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Beglov D, Roux B. Solvation of complex molecules in a polar liquid: An integral equation theory. J Chem Phys 1996. [DOI: 10.1063/1.471557] [Citation(s) in RCA: 150] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Beglov D, Roux B. Numerical solution of the hypernetted chain equation for a solute of arbitrary geometry in three dimensions. J Chem Phys 1995. [DOI: 10.1063/1.469602] [Citation(s) in RCA: 115] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Fries P, Kunz W, Calmettes P, Turq P. Pictorial intuition of the correlation between structure and properties in liquid solutions: acetonitrile as a strongly structured solvent of dissociated ions. ACTA ACUST UNITED AC 1995. [DOI: 10.1016/0166-1280(94)03852-c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Fries PH, Kunz W, Calmettes P, Turq P. Small‐angle neutron scattering: A critical study of the contrast approximation. J Chem Phys 1994. [DOI: 10.1063/1.468166] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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