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Gilbert-Wilson R, Das B, Mizdrak D, Field LD, Ball GE. Observation and Analysis of Large Dynamic Frequency Shifts in the 1H NMR Signals of H–D in Deuterium-Substituted Dihydrogen Complexes. Inorg Chem 2020; 59:15570-15573. [DOI: 10.1021/acs.inorgchem.0c02082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ryan Gilbert-Wilson
- School of Chemistry, University of New South Wales (UNSW), Sydney, New South Wales 2052, Australia
| | - Biswanath Das
- School of Chemistry, University of New South Wales (UNSW), Sydney, New South Wales 2052, Australia
| | - Dejan Mizdrak
- School of Chemistry, University of New South Wales (UNSW), Sydney, New South Wales 2052, Australia
| | - Leslie D. Field
- School of Chemistry, University of New South Wales (UNSW), Sydney, New South Wales 2052, Australia
| | - Graham E. Ball
- School of Chemistry, University of New South Wales (UNSW), Sydney, New South Wales 2052, Australia
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2
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Wu G. 17O NMR studies of organic and biological molecules in aqueous solution and in the solid state. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2019; 114-115:135-191. [PMID: 31779879 DOI: 10.1016/j.pnmrs.2019.06.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Revised: 06/11/2019] [Accepted: 06/11/2019] [Indexed: 06/10/2023]
Abstract
This review describes the latest developments in the field of 17O NMR spectroscopy of organic and biological molecules both in aqueous solution and in the solid state. In the first part of the review, a general theoretical description of the nuclear quadrupole relaxation process in isotropic liquids is presented at a mathematical level suitable for non-specialists. In addition to the first-order quadrupole interaction, the theory also includes additional relaxation mechanisms such as the second-order quadrupole interaction and its cross correlation with shielding anisotropy. This complete theoretical treatment allows one to assess the transverse relaxation rate (thus the line width) of NMR signals from half-integer quadrupolar nuclei in solution over the entire range of motion. On the basis of this theoretical framework, we discuss general features of quadrupole-central-transition (QCT) NMR, which is a particularly powerful method of studying biomolecules in the slow motion regime. Then we review recent advances in 17O QCT NMR studies of biological macromolecules in aqueous solution. The second part of the review is concerned with solid-state 17O NMR studies of organic and biological molecules. As a sequel to the previous review on the same subject [G. Wu, Prog. Nucl. Magn. Reson. Spectrosc. 52 (2008) 118-169], the current review provides a complete coverage of the literature published since 2008 in this area.
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Affiliation(s)
- Gang Wu
- Department of Chemistry, Queen's University, 90 Bader Lane, Kingston, Ontario K7L 3N6, Canada.
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Zhu J, Wu G. Quadrupole central transition 17O NMR spectroscopy of biological macromolecules in aqueous solution. J Am Chem Soc 2010; 133:920-32. [PMID: 21175170 DOI: 10.1021/ja1079207] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We demonstrate a general nuclear magnetic resonance (NMR) spectroscopic approach in obtaining high-resolution (17)O (spin-5/2) NMR spectra for biological macromolecules in aqueous solution. This approach, termed quadrupole central transition (QCT) NMR, is based on the multiexponential relaxation properties of half-integer quadrupolar nuclei in molecules undergoing slow isotropic tumbling motion. Under such a circumstance, Redfield's relaxation theory predicts that the central transition, m(I) = +1/2 ↔ -1/2, can exhibit relatively long transverse relaxation time constants, thus giving rise to relatively narrow spectral lines. Using three robust protein-ligand complexes of size ranging from 65 to 240 kDa, we have obtained (17)O QCT NMR spectra with unprecedented resolution, allowing the chemical environment around the targeted oxygen atoms to be directly probed for the first time. The new QCT approach increases the size limit of molecular systems previously attainable by solution (17)O NMR by nearly 3 orders of magnitude (1000-fold). We have also shown that, when both quadrupole and shielding anisotropy interactions are operative, (17)O QCT NMR spectra display an analogous transverse relaxation optimized spectroscopy type behavior in that the condition for optimal resolution depends on the applied magnetic field. We conclude that, with the currently available moderate and ultrahigh magnetic fields (14 T and higher), this (17)O QCT NMR approach is applicable to a wide variety of biological macromolecules. The new (17)O NMR parameters so obtained for biological molecules are complementary to those obtained from (1)H, (13)C, and (15)N NMR studies.
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Affiliation(s)
- Jianfeng Zhu
- Department of Chemistry, Queen's University, 90 Bader Lane, Kingston, Ontario, Canada K7L 3N6
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Nicholas MP, Eryilmaz E, Ferrage F, Cowburn D, Ghose R. Nuclear spin relaxation in isotropic and anisotropic media. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2010; 57:111-158. [PMID: 20633361 PMCID: PMC4015737 DOI: 10.1016/j.pnmrs.2010.04.003] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2010] [Accepted: 04/13/2010] [Indexed: 05/28/2023]
Affiliation(s)
- Matthew P. Nicholas
- New York Structural Biology Center, 89 Convent Avenue, Park
Building at 133rd St., New York, New York, 10027, USA
| | - Ertan Eryilmaz
- Department of Chemistry, City College of the City University
of New York, New York 10031, U.S.A
- Graduate Center of the City University of New York, New York
10016, U.S.A
| | - Fabien Ferrage
- New York Structural Biology Center, 89 Convent Avenue, Park
Building at 133rd St., New York, New York, 10027, USA
- Département de Chimie, Ecole Normale
Supérieure, and CNRS, UMR 7203; 24 rue Lhomond, 75231 Paris cedex 05,
France
| | - David Cowburn
- New York Structural Biology Center, 89 Convent Avenue, Park
Building at 133rd St., New York, New York, 10027, USA
| | - Ranajeet Ghose
- Department of Chemistry, City College of the City University
of New York, New York 10031, U.S.A
- Graduate Center of the City University of New York, New York
10016, U.S.A
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Tugarinov V, Ollerenshaw JE, Kay LE. Dipolar dynamic frequency shifts in multiple-quantum spectra of methyl groups in proteins: correlation with side-chain motion. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2006; 44 Spec No:S122-9. [PMID: 16826549 DOI: 10.1002/mrc.1819] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Small deviations from the expected relative positions of multiplet components in double- and zero-quantum 1H-13C methyl correlation maps have been observed in spectra recorded on a 7-kDa protein. These dynamic frequency shifts (DFS) are the result of dipolar cross-correlations that derive from fields produced by the spins within the methyl groups. The shifts have been quantified and compared with values calculated from a Redfield analysis. Good agreement is noted between the signs of the predicted and experimentally observed relative shifts of lines in both F1 and F2 dimensions of spectra, as well as between the magnitudes of the calculated and observed shifts in the F2 (1H) dimension. The experimental DFS values show a reasonable correlation with 2H relaxation-derived measures of methyl side-chain dynamics, as expected from theory. This suggests that in cases where such shifts can be quantified, they can serve as qualitative measures of motion.
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Affiliation(s)
- Vitali Tugarinov
- Department of Medical Genetics, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
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Bernatowicz P, Kowalewski J, Kruk D, Werbelow LG. 13C NMR Line Shapes in the Study of Dynamics of Perdeuterated Methyl Groups. J Phys Chem A 2004. [DOI: 10.1021/jp049854m] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Piotr Bernatowicz
- Physical Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden, and Chemistry Department, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801
| | - Jozef Kowalewski
- Physical Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden, and Chemistry Department, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801
| | - Danuta Kruk
- Physical Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden, and Chemistry Department, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801
| | - Lawrence G. Werbelow
- Physical Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden, and Chemistry Department, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801
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Kemp-Harper R, Philp DJ, Kuchel PW. Nuclear magnetic resonance ofJ-coupled quadrupolar nuclei: Use of the tensor operator product basis. J Chem Phys 2001. [DOI: 10.1063/1.1377025] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Du LS, Schurko RW, Lim KH, Grey CP. A Solid-State 93Nb and 19F NMR Spectroscopy and X-ray Diffraction Study of Potassium Heptafluoroniobate(V): Characterization of 93Nb, 19F Coupling, and Fluorine Motion. J Phys Chem A 2001. [DOI: 10.1021/jp0032006] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lin-Shu Du
- Department of Chemistry, State University of New York at Stony Brook, Stony Brook, New York, 11794-3400
| | - Robert W. Schurko
- Department of Chemistry, State University of New York at Stony Brook, Stony Brook, New York, 11794-3400
| | - Kwang Hun Lim
- Department of Chemistry, State University of New York at Stony Brook, Stony Brook, New York, 11794-3400
| | - Clare P. Grey
- Department of Chemistry, State University of New York at Stony Brook, Stony Brook, New York, 11794-3400
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Karthik G, Kumar A. Environment-induced corrections to the spin Hamiltonian as dynamic frequency shifts in nuclear magnetic resonance. J Chem Phys 2000. [DOI: 10.1063/1.1313526] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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10
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Kaikkonen A, Kowalewski J. NMR relaxation in multipolar AX systems under spin locking conditions. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 1999; 141:326-334. [PMID: 10579956 DOI: 10.1006/jmre.1999.1909] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
A relaxation matrix has been calculated for a multipolar AX spin system under the on-resonance spin-locking condition. Auto- and cross-correlation terms between dipolar, quadrupolar, and CSA interactions are considered. It is shown that the spin-lock leads to many relaxation pathways being blocked, resulting in a considerably simplified relaxation network. The presence of spectral densities at zero frequency, associated with locked nuclei, allows efficient relaxation also in the absence of fast molecular motions.
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Affiliation(s)
- A Kaikkonen
- Arrhenius Laboratory, Stockholm University, Stockholm, S-10691, Sweden
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11
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Werbelow LG, Morris GA, Kumar P, Kowalewski J. Cross-correlated quadrupolar spin relaxation and carbon-13 lineshapes in the (13)CD(2) spin grouping. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 1999; 140:1-8. [PMID: 10479544 DOI: 10.1006/jmre.1999.1792] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Lineshape calculations are reported for a spin system consisting of a spin-12 nucleus scalar-coupled to two magnetically equivalent spin-1 nuclei, e.g., a CD(2) group. It is found that, because of the differential line broadening, the peak height ratio of the five spin-12 nucleus transitions is expected to deviate from the integrated intensity ratio of 1:2:3:2:1. The deviation is dependent on the extent of cross-correlation between the two quadrupolar interactions. The theoretical predictions for peak height ratios and for bandshapes are tested for the carbon-13 spectrum of perdeuterated ethylene glycol, and iterative fitting is used to obtain an estimate of the extent of the correlation between the quadrupolar interactions for the two deuterons.
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Affiliation(s)
- L G Werbelow
- Chemistry Department, NMIMT, Socorro, New Mexico 87801, USA
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Chenon MT, Dunkel R, Grant DM, Werbelow LG. NMR Relaxation Studies of the 13CH3 Spin Grouping in the Vicinity of the T1 Minimum. J Phys Chem A 1999. [DOI: 10.1021/jp982564j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marie-Thérèse Chenon
- LADIR, CNRS, 2 Rue Henry Dunant, 94320 Thiais, France, ScienceSoft Corporation, 470 S. 1300 E. #1004, Salt Lake City, Utah 84102, Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, and Department of Chemistry, NMIMT, Socorro, New Mexico 87801
| | - Reinhard Dunkel
- LADIR, CNRS, 2 Rue Henry Dunant, 94320 Thiais, France, ScienceSoft Corporation, 470 S. 1300 E. #1004, Salt Lake City, Utah 84102, Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, and Department of Chemistry, NMIMT, Socorro, New Mexico 87801
| | - David M. Grant
- LADIR, CNRS, 2 Rue Henry Dunant, 94320 Thiais, France, ScienceSoft Corporation, 470 S. 1300 E. #1004, Salt Lake City, Utah 84102, Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, and Department of Chemistry, NMIMT, Socorro, New Mexico 87801
| | - Lawrence G. Werbelow
- LADIR, CNRS, 2 Rue Henry Dunant, 94320 Thiais, France, ScienceSoft Corporation, 470 S. 1300 E. #1004, Salt Lake City, Utah 84102, Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, and Department of Chemistry, NMIMT, Socorro, New Mexico 87801
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13
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Skrynnikov NR, Lienin SF, Brüschweiler R, Ernst RR. Efficient scalar spin relaxation in the rotating frame for matched radio-frequency fields. J Chem Phys 1998. [DOI: 10.1063/1.476202] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Gabel SA, Luck LA, Werbelow LG, London RE. Dynamic frequency shifts of complexed ligands: An NMR study of D--1-13C,1-2H-glucose complexed to the Escherichia coli periplasmic glucose/galactose receptor. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 1997; 128:101-104. [PMID: 9356263 DOI: 10.1006/jmre.1997.1223] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The 13C multiplet structure of D--1-13C,1-2H-glucose complexed to the Escherichia coli periplasmic glucose/galactose receptor has been studied as a function of temperature. Asymmetric multiplet patterns observed are shown to arise from dynamic frequency shifts. Multiplet asymmetry contributions resulting from shift anisotropy-dipolar cross correlations were found to be small, with optimal fits of the data corresponding to small, negative values of the correlation factor, chiCD-CSA. Additional broadening at higher temperatures most probably results from ligand exchange between free and complexed states. Effects of internal motion are also considered theoretically, and indicate that the order parameter for the bound glucose is >/=0.9.
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Affiliation(s)
- S A Gabel
- Laboratory of Structural Biology, MR-01, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709, USA
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15
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Werbelow LG, Kowalewski J. Nuclear spin relaxation of spin one-half nuclei in the presence of neighboring higher-spin nuclei. J Chem Phys 1997. [DOI: 10.1063/1.474634] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16
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Artemev AY. Environment dependence of spectral and dissipative properties of an open spin system. PHYSICAL REVIEW. A, ATOMIC, MOLECULAR, AND OPTICAL PHYSICS 1996; 54:2779-2785. [PMID: 9913790 DOI: 10.1103/physreva.54.2779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Schurko RW, Wasylishen RE, Nelson JH. Effect of Cobalt-59 Self-Decoupling on the Solid-State 31P CP/MAS NMR Spectra of Cobaloximes. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp960563q] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Robert W. Schurko
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3, and Department of Chemistry, University of Nevada, Reno, Nevada 89557
| | - Roderick E. Wasylishen
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3, and Department of Chemistry, University of Nevada, Reno, Nevada 89557
| | - John H. Nelson
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3, and Department of Chemistry, University of Nevada, Reno, Nevada 89557
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18
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Werbelow LG. Adiabatic nuclear magnetic resonance linewidth contributions for central transitions ofI>1/2 nuclei. J Chem Phys 1996. [DOI: 10.1063/1.471712] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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