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Mukherjee S, Saha S, Ghosh S, Adhikari S, Sathyamurthy N, Baer M. Quasi-Classical Trajectory Calculations on a Two-State Potential Energy Surface Including Nonadiabatic Coupling Terms as Friction for D + + H 2 Collisions. J Phys Chem A 2024; 128:7691-7702. [PMID: 39172694 DOI: 10.1021/acs.jpca.4c03237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2024]
Abstract
Akin to the traditional quasi-classical trajectory method for investigating the dynamics on a single adiabatic potential energy surface for an elementary chemical reaction, we carry out the dynamics on a 2-state ab initio potential energy surface including nonadiabatic coupling terms as friction terms for D+ + H2 collisions. It is shown that the resulting dynamics correctly accounts for nonreactive charge transfer, reactive non-charge transfer and reactive charge transfer processes. In addition, it leads to the formation of triatomic DH2+ species as well.
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Affiliation(s)
- Soumya Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
- Department of Chemistry, Maulana Azad National Institute of Technology, Bhopal 462003, India
| | - Swagato Saha
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Sandip Ghosh
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, Nadia 741246, India
| | - Satrajit Adhikari
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Narayanasami Sathyamurthy
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, SAS Nagar, Manauli 140306, India
| | - Michael Baer
- The Fritz Haber Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
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Domínguez JC, Silva ED, Pimbi D, Morales JA. Electron Nuclear Dynamics of H + + C 2H 2 at E Lab = 30, 200, and 450 eV. J Phys Chem A 2024. [PMID: 39052312 DOI: 10.1021/acs.jpca.4c03709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
We present a complete simplest-level electron nuclear dynamics (SLEND) investigation of H+ + C2H2 at collision energies ELab = 30, 200, and 450 eV. This reaction is relevant in astrophysics and provides a computationally feasible prototype for proton cancer therapy reactions. SLEND is a time-dependent, variational, direct, and nonadiabatic method that adopts a classical-mechanics description for the nuclei and a Thouless single-determinantal wave function for the electrons. We perform this study with our code PACE, which incorporates the One Electron Direct/Electron Repulsion Direct (OED/ERD) atomic integrals package developed by the Bartlett group. Current SLEND simulations with the 6-31G** basis set involves 2,646 trajectory calculations from 9 nonredundant, symmetry-inequivalent projectile-target orientations. For H+ + C2H2 at ELab = 30 eV, SLEND/6-31G** simulations predict one simple scattering process, and three reactive ones: C2H2 hydrogen substitution, C2H2 fragmentation into two CH moieties, and C2H2 fragmentation into CHC and H moieties, respectively. We reveal and analyze the mechanisms of these processes through computer animations; this valuable chemical information is inaccessible by experiments. The SLEND/6-31G** scattering angle functions exhibit primary and secondary rainbow scattering features that vary with the projectile-target orientations and collision energies. SLEND/6-31G** predicts 1-electron-transfer (1-ET) integral cross sections at ELab = 30, 200, and 450 eV in good agreement with their experimental counterparts. SLEND/6-31-G** predicts 1-ET differential cross sections (DCSs) at ELab = 30 eV that agree well with their experimental counterparts over all the measured scattering angles. In addition, SLEND/6-31G** predicts 0-ET DCSs at ELab = 30 eV that agree well with their experimental counterparts at low scattering angles, but less satisfactorily at higher ones. Remarkably, both the 0- and 1-ET DCSs from SLEND/6-31G** exhibit distinct primary rainbow scattering signatures in excellent agreement with their experimentally inferred counterparts. Furthermore, both SLEND/6-31G** and the experiment indicate that the primary rainbow scattering angles from the 0- and 1-ET DCSs are identical (an unusual fact in proton-molecule collisions). Through these rainbow scattering predictions, SLEND has also validated a procedure to extract primary rainbow angles from structureless DCSs. We analyze the obtained theoretical results in comparison with available experimental data and discuss forthcoming developments in the SLEND method.
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Affiliation(s)
- Juan C Domínguez
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, Lubbock, Texas 79409-1061, United States
| | - Eivson D Silva
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, Lubbock, Texas 79409-1061, United States
| | - Daniel Pimbi
- Department of Electrical and Computer Engineering, Texas Tech University, Box 43102, Lubbock, Texas 79409, United States
| | - Jorge A Morales
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, Lubbock, Texas 79409-1061, United States
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Domínguez JC, Kim H, Silva ED, Pimbi D, Morales JA. Electron nuclear dynamics of time-dependent symmetry breaking in H + + H 2O at ELab = 28.5-200.0 eV: a prototype for ion cancer therapy reactions. Phys Chem Chem Phys 2023; 25:2019-2034. [PMID: 36545768 PMCID: PMC10824558 DOI: 10.1039/d2cp04854j] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
Following our preceding research [P. M. McLaurin, R. Merritt, J. C. Domínguez, E. S. Teixeira and J. A. Morales, Phys. Chem. Chem. Phys., 2019, 21, 5006], we present an electron nuclear dynamics (END) investigation of H+ + H2O at ELab = 28.5-200.0 eV in conjunction with a computational procedure to induce symmetry breaking during evolution. The investigated system is a computationally feasible prototype to simulate water radiolysis reactions in ion cancer therapy. END is a time-dependent, variational, non-adiabatic, and on-the-fly method, which utilizes classical mechanics for nuclei and a Thouless single-determinantal state for electrons. In this study, a procedure inherent to END introduces low degrees of symmetry breaking into the reactants' restricted Hartree-Fock (RHF) state to induce a higher symmetry breaking during evolution. Specifically, the Thouless exponential operator acting on the RHF reference generates an axial spin density wave (ASDW) state according to Fukutome's analysis of HF symmetry breaking; this state exhibits spatial and spin symmetry breaking. By varying a Thouless parameter, low degrees of symmetry breaking are introduced into ASDW states. After starting the dynamics from those states, higher degrees of symmetry breaking may subsequently emerge as dictated by the END equations without ad hoc interventions. Simulations starting from symmetry-conforming states preserve the symmetry features during dynamics, whereas simulations starting from symmetry-broken states display an upsurge of symmetry breaking once the reactants collide. Present simulations predict three types of reactions: (I) projectile scattering, (II) hydrogen substitution, and (III) water radiolysis into H + OH and 2H + O fragments. Remarkably, symmetry breaking considerably increases the extent of the target-to-projectile electron transfers (ETs) occurring during the above reactions. Then, with symmetry breaking, 1-ET differential and integral cross sections increase in value, whereas 0-ET differential cross sections and primary rainbow scattering angles decrease. More importantly, END properties calculated from symmetry-breaking simulations exhibit better agreement with the experimental data. Notably, END 1-ET integral cross sections with symmetry breaking compare better with their experimental counterparts than 1-ET integral cross sections from high-level close-coupling calculations; moreover, END validates an undetected rainbow scattering peak inferred from the experimental data. A discussion of our symmetry-breaking procedure in the context of Fukutome's analysis of HF symmetry breaking is also presented.
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Affiliation(s)
- Juan C Domínguez
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, Lubbock, TX 79409-1061, USA.
| | - Hyunsik Kim
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, Lubbock, TX 79409-1061, USA.
| | - Eivson D Silva
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, Lubbock, TX 79409-1061, USA.
| | - Daniel Pimbi
- Department of Electrical and Computer Engineering, Texas Tech University, Box 43102, Lubbock, TX 79409, USA
| | - Jorge A Morales
- Department of Chemistry and Biochemistry, Texas Tech University, Box 41061, Lubbock, TX 79409-1061, USA.
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Wang C, Ulusoy IS, Aebersold LE, Wilson AK. Multi-configuration electron-nuclear dynamics: An open-shell approach. J Chem Phys 2021; 155:154103. [PMID: 34686063 DOI: 10.1063/5.0063478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The multi-configuration electron-nuclear dynamics for open shell systems with a spin-unrestricted formalism is described. The mean fields are evaluated using second-order reduced density matrices for electronic and nuclear degrees of freedom. Applications to light-element diatomics including equilibrium geometries, electronic energies, dipole moments, and absorption spectra are presented. The von Neumann entropies for different spin states of a LiH molecule are compared.
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Affiliation(s)
- Cong Wang
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
| | - Inga S Ulusoy
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
| | - Lucas E Aebersold
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
| | - Angela K Wilson
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
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Silva ED, McLaurin PM, Morales JA. Statistical-law formulas for zero- to two-electron-transfer probabilities in proton-molecule and proton cancer therapy reactions from electron nuclear dynamics theory. J Chem Phys 2021; 155:124112. [PMID: 34598579 PMCID: PMC8480997 DOI: 10.1063/5.0063158] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 09/02/2021] [Indexed: 11/14/2022] Open
Abstract
We present the first quantum-mechanical derivation of statistical-law formulas to calculate zero- to two-electron transfers (ETs) in proton-molecule reactions. The original statistical derivation assumed that the n-ET probabilities of N electrons in a shell obey an N-trial binomial distribution with success probability equal to an individual one-ET probability; the latter was heuristically identified with the number of transferred electrons from the integrated charge density. The obtained formulas proved accurate to calculate ET cross sections in proton-molecule and proton cancer therapy (PCT) reactions. We adopt the electron nuclear dynamics (END) theory in our quantum-mechanical derivation due to its versatile description of ETs via a Thouless single-determinantal state. Since non-orthogonal Thouless dynamical spin-orbitals pose mathematical difficulties, we first present a derivation for a model system with N ≥ 2 electrons where only two with opposite spins are ET active; in that scheme, the Thouless dynamical spin-orbitals become orthogonal, a fact that facilitates a still intricate derivation. In the end, we obtain the number of transferred electrons from the Thouless state charge density and the ETs probabilities from the Thouless state resolution into projectile-molecule eigenstates describing ETs. We prove that those probabilities and numbers of electrons interrelate as in the statistical-law formulas via their common dependency on the Thouless variational parameters. We review past ET results of proton-molecule and PCT reactions obtained with these formulas in the END framework and present new results of H+ + N2O. We will present the derivation for systems with N > 2 electrons all active for ETs in a sequel.
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Affiliation(s)
| | - Patrick M. McLaurin
- Department of Chemistry and Biochemistry, Texas Tech University, P.O. Box 41061, Lubbock, Texas 79409-1061, USA
| | - Jorge A. Morales
- Department of Chemistry and Biochemistry, Texas Tech University, P.O. Box 41061, Lubbock, Texas 79409-1061, USA
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McLaurin PM, Morales JA. Electron nuclear dynamics of H + + CO 2 (000) → H + + CO 2 ( v1v2v3) at ELab = 20.5-30 eV with coherent-states quantum reconstruction procedure. Phys Chem Chem Phys 2020; 22:19549-19559. [PMID: 32869775 PMCID: PMC7501211 DOI: 10.1039/d0cp03722b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2023]
Abstract
The simplest-level electron nuclear dynamics (SLEND) method with the coherent-states (CSs) quantum reconstruction procedure (CSQRP) is applied to the scattering system H+ + CO2 (000) → H+ + CO2 (v1v2v3) at ELab = 20.5-30 eV. Relevant for astrophysics, atmospheric chemistry and proton cancer therapy, this system undergoes collision-induced vibrational excitations in CO2. SLEND is a time-dependent, variational, direct, and non-adiabatic method that adopts a classical-mechanics description for nuclei and a single-determinantal wavefunction for electrons. The CSQRP employs the canonical CS to reconstruct quantum state-to-state vibrational properties from the SLEND classical nuclear dynamics. Overall, the calculated collision-induced vibrational properties agree well with experimental data. SLEND total differential cross sections (DCSs) agree remarkably well with their experimental counterparts and accurately display rainbow scattering angles structures. SLEND averaged target excitation energies for vibrational + rotational and rotational motions exhibit reasonable and good agreements with experimental data, respectively. These properties show that rotational excitation is low and that the asymmetric stretch normal mode of CO2 is much more excited than the others. SLEND/CSQRP state-to-state vibrational DCSs agree reasonably well with the sparse experimental data for final states v1v2v3 = 000-002, but less satisfactorily for 003. These DCSs also accurately display rainbow scattering angles structures. Finally, SLEND/CSQRP vibrational proton energy loss spectra agree remarkably well with their experimental counterparts for various final vibrational states of CO2, collisions energies and scattering angles. Present results demonstrate the accuracy of SLEND/CSQRP to predict state-to-state vibrational properties in scattering systems with multiple normal modes.
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Affiliation(s)
- Patrick M McLaurin
- Department of Chemistry and Biochemistry, Texas Tech University, PO Box 41061, Lubbock, TX 79409-1061, USA.
| | - Jorge A Morales
- Department of Chemistry and Biochemistry, Texas Tech University, PO Box 41061, Lubbock, TX 79409-1061, USA.
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Stopera C, Morales JA. Temporally stable rotational coherent states for molecular simulations. I. Spherical and linear rotor cases. J Chem Phys 2020; 152:134112. [PMID: 32268766 DOI: 10.1063/5.0002424] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
We reformulate a previous rotational coherent state (CS) to obtain temporally stable (TS) CSs for the spherical rotor (SR) and linear rotor (LR): TSSR and TSLR CSs, respectively. Being TS, the new CSs remain within their own classes during dynamics by evolving exclusively through their CS parameters. The new TS CSs are now appropriate to reconstruct quantum rotational properties from classical-mechanics simulations of chemical reactions. Following literature precedents, we enforce temporal stability by incorporating action-angle-related phase factors into the parameters of the original CS. In addition, to elucidate CS quantum reconstruction procedures, we derive one more rotational CS from a quantum electron nuclear dynamics description of a diatomic rotor (DR). The DR CS and the TSLR CS are not identical but display similar structures and properties. We rigorously demonstrate and examine the key properties of the three CSs: continuity, resolution of unity, temporal stability, action identity, minimum uncertainty relationships, and quasi-classical behavior. Finally, we present computer simulations of the CSs dynamics and an application of them to predict CO rotational excitation probabilities in the Li+ + CO reaction. CS results agree satisfactorily with experimental ones and encourage future applications in chemical dynamics, statistical mechanics, spectroscopy, nuclear physics, quantum coherence, and quantum computing.
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Affiliation(s)
- Christopher Stopera
- Department of Chemistry and Industrial Hygiene, University of North Alabama, Florence, Alabama 35632, USA
| | - Jorge A Morales
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, USA
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Gupta AK, Dhindhwal V, Baer M, Sathyamurthy N, Ravi S, Mukherjee S, Mukherjee B, Adhikari S. Non-adiabatic coupling and conical intersection(s) between potential energy surfaces for HeH2+. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1683243] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Ankur Kumar Gupta
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Manauli, India
- Department of Chemistry, Indiana University Bloomington, United States
| | - Vikash Dhindhwal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Manauli, India
| | - Michael Baer
- The Fritz Haber Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Narayanasami Sathyamurthy
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Manauli, India
- Jawaharlal Nehru Centre for Advanced Scientific Research, Bengaluru, India
| | - Satyam Ravi
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, India
| | - Soumya Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, India
| | - Bijit Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, India
| | - Satrajit Adhikari
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, India
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9
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McLaurin PM, Merritt R, Dominguez JC, Teixeira ES, Morales JA. Symmetry-breaking effects on time-dependent dynamics: correct differential cross sections and other properties in H + + C 2H 4 at E Lab = 30 eV. Phys Chem Chem Phys 2019; 21:5006-5021. [PMID: 30762051 DOI: 10.1039/c8cp07529h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
We present a computational procedure that introduces low degrees of symmetry breaking into a restricted Hartree-Fock (RHF) state in order to induce higher symmetry breaking during the state's subsequent dynamics. The symmetries herein considered are those of electronic HF states as classified by Fukutome; those symmetries affect bond dissociations and internal rotations among other phenomena. Therefore, this investigation extends a part of Fukutome's time-independent analysis of symmetry breaking to the time-dependent (dynamical) regime. The procedure is formulated in the framework of the simplest-level electron nuclear dynamics, a time-dependent, variational, on-the-fly and non-adiabatic method that employs classical dynamics for the nuclei and a Thouless single-determinantal state for the electrons. We test this procedure on the H+ + C2H4 reaction at 30 eV due to its conspicuous display of symmetry-breaking effects; this reaction is relevant in astrophysics and proton cancer therapy. Fukutome's axial spin density wave (ASDW) HF state is used to represent the symmetry-broken initial states. Through a Thouless parameter, small degrees of symmetry breaking are introduced into the initial ASDW states in a controlled manner. After starting the dynamics from those states, higher degrees of symmetry breaking emerge or not as determined by the direct-dynamics equations without external interventions. Simulations starting from symmetry-conforming states preserve symmetry features during dynamics, whereas simulations starting from symmetry-broken states display an upsurge of symmetry breaking when the reactants collide. Initial symmetry breaking increases the total integral cross sections of collision-induced fragmentations and of target-to-proton 1-electron-transfer reactions and decreases the scattering angle function and primary rainbow angle of the outgoing projectile. Remarkably, symmetry-breaking simulations reproduce the correct relative order and values of the experimental 0- and 1-electron-transfer differential cross sections, whereas symmetry-conforming simulations predict incorrect order and values. Our calculated scattering angle functions and differential cross sections also exhibit expected primary and secondary rainbow angle features that experiments fail to detect. A detailed discussion on the description of symmetry-breaking processes with the ASDW and Thouless states is included to provide a rigorous theoretical basis for this investigation.
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Affiliation(s)
- Patrick M McLaurin
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, 79409-1061, USA.
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Yan YA, Morales JA. Non-adiabatic molecular dynamics simulations of non-charge-transfer and charge-transfer scattering in H + +CO 2 at ELab=30 eV. CHINESE J CHEM PHYS 2018. [DOI: 10.1063/1674-0068/31/cjcp1712242] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Yun-An Yan
- Guizhou Provincial Key Laboratory of Computational Nano-material Science Guizhou Education University, Guiyang 550018, China
| | - Jorge A. Morales
- Department of Chemistry and Biochemistry, Texas Tech University, PO Box 41061, Lubbock, TX 79409-1061, USA
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Mukherjee B, Mukhopadhyay D, Adhikari S, Baer M. Topological study of the H3++ molecular system: H3++ as a cornerstone for building molecules during the Big Bang. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1442940] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Bijit Mukherjee
- Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India
| | | | - Satrajit Adhikari
- Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India
| | - Michael Baer
- The Fritz Haber Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem, Israel
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Exploring water radiolysis in proton cancer therapy: Time-dependent, non-adiabatic simulations of H+ + (H2O)1-6. PLoS One 2017; 12:e0174456. [PMID: 28376128 PMCID: PMC5380356 DOI: 10.1371/journal.pone.0174456] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2016] [Accepted: 03/09/2017] [Indexed: 11/23/2022] Open
Abstract
To elucidate microscopic details of proton cancer therapy (PCT), we apply the simplest-level electron nuclear dynamics (SLEND) method to H+ + (H2O)1-6 at ELab = 100 keV. These systems are computationally tractable prototypes to simulate water radiolysis reactions—i.e. the PCT processes that generate the DNA-damaging species against cancerous cells. To capture incipient bulk-water effects, ten (H2O)1-6 isomers are considered, ranging from quasi-planar/multiplanar (H2O)1-6 to “smallest-drop” prism and cage (H2O)6 structures. SLEND is a time-dependent, variational, non-adiabatic and direct method that adopts a nuclear classical-mechanics description and an electronic single-determinantal wavefunction in the Thouless representation. Short-time SLEND/6-31G* (n = 1–6) and /6-31G** (n = 1–5) simulations render cluster-to-projectile 1-electron-transfer (1-ET) total integral cross sections (ICSs) and 1-ET probabilities. In absolute quantitative terms, SLEND/6-31G* 1-ET ICS compares satisfactorily with alternative experimental and theoretical results only available for n = 1 and exhibits almost the same accuracy of the best alternative theoretical result. SLEND/6-31G** overestimates 1-ET ICS for n = 1, but a comparable overestimation is also observed with another theoretical method. An investigation on H+ + H indicates that electron direct ionization (DI) becomes significant with the large virtual-space quasi-continuum in large basis sets; thus, SLEND/6-31G** 1-ET ICS is overestimated by DI contributions. The solution to this problem is discussed. In relative quantitative terms, both SLEND/6-31* and /6-31G** 1-ET ICSs precisely fit into physically justified scaling formulae as a function of the cluster size; this indicates SLEND’s suitability for predicting properties of water clusters with varying size. Long-time SLEND/6-31G* (n = 1–4) simulations predict the formation of the DNA-damaging radicals H, OH, O and H3O. While “smallest-drop” isomers are included, no early manifestations of bulk water PCT properties are observed and simulations with larger water clusters will be needed to capture those effects. This study is the largest SLEND investigation on water radiolysis to date.
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Mclaurin PM, Privett AJ, Stopera C, Grimes TV, Perera A, Morales JA. In honour of N. Yngve Öhrn: surveying proton cancer therapy reactions with Öhrn's electron nuclear dynamics method. Aqueous clusters radiolysis and DNA-base damage by proton collisions. Mol Phys 2015. [DOI: 10.1080/00268976.2014.938709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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15
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Electron nuclear dynamics of proton collisions with DNA/RNA bases at ELab=80keV: A contribution to proton cancer therapy research. Chem Phys Lett 2014. [DOI: 10.1016/j.cplett.2014.04.018] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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16
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Wang J, Gao CZ, Calvayrac F, Zhang FS. Collision dynamics of proton with formaldehyde: fragmentation and ionization. J Chem Phys 2014; 140:124306. [PMID: 24697440 DOI: 10.1063/1.4868985] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using time-dependent density functional theory, applied to the valence electrons and coupled non-adiabatically to molecular dynamics of the ions, we study the ionization and fragmentation of formaldehyde in collision with a proton. Four different impact energies: 35 eV, 85 eV, 135 eV, and 300 eV are chosen in order to study the energy effect in the low energy region, and ten different incident orientations at 85 eV are considered for investigating the steric effect. Fragmentation ratios, single, double, and total electron ionization cross sections are calculated. For large impact parameters, these results are close to zero irrespective of the incident orientations due to a weak projectile-target interaction. For small impact parameters, the results strongly depend on the collision energy and orientation. We also give the kinetic energy releases and scattering angles of protons, as well as the cross section of different ion fragments and the corresponding reaction channels.
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Affiliation(s)
- Jing Wang
- The Key Laboratory of Beam Technology and Material Modification of Ministry of Education, College of Nuclear Science and Technology, Beijing Normal University, Beijing 100875, China
| | - Cong-Zhang Gao
- The Key Laboratory of Beam Technology and Material Modification of Ministry of Education, College of Nuclear Science and Technology, Beijing Normal University, Beijing 100875, China
| | - Florent Calvayrac
- Institut des Molecules et Matériaux du Mans UMR 6283, Université du Maine, LUNAM 72085 Le Mans Cedex 9, France
| | - Feng-Shou Zhang
- The Key Laboratory of Beam Technology and Material Modification of Ministry of Education, College of Nuclear Science and Technology, Beijing Normal University, Beijing 100875, China
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Gao CZ, Wang J, Wang F, Zhang FS. Theoretical study on collision dynamics of H+ + CH4 at low energies. J Chem Phys 2014; 140:054308. [DOI: 10.1063/1.4863635] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
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18
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Urbain X, de Ruette N, Andrianarijaona VM, Martin MF, Menchero LF, Errea LF, Méndez L, Rabadán I, Pons B. New light shed on charge transfer in fundamental H+ + H2 collisions. PHYSICAL REVIEW LETTERS 2013; 111:203201. [PMID: 24289684 DOI: 10.1103/physrevlett.111.203201] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2013] [Indexed: 06/02/2023]
Abstract
There is no consensus on the magnitude and shape of the charge transfer cross section in low-energy H+ + H2 collisions, in spite of the fundamental importance of these collisions. Experiments have thus been carried out in the energy range 15≤E≤5000 eV. The measurements invalidate previous recommended data for E≤200 eV and confirm the existence of a local maximum around 45 eV, which was predicted theoretically. Additionally, vibrationally resolved cross sections allow us to investigate the evolution of the underlying charge transfer mechanism as a function of E.
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Affiliation(s)
- X Urbain
- IMCN, Université Catholique de Louvain, Chemin du Cyclotron 2, 1348 Louvain-la-Neuve, Belgium
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19
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Gao CZ, Wang J, Zhang FS. Dynamics of proton collisions with acetylene, ethylene and ethane at 30eV. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2012.10.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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20
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Stopera C, Grimes TV, McLaurin PM, Privett A, Morales JA. Some Recent Developments in the Simplest-Level Electron Nuclear Dynamics Method. ADVANCES IN QUANTUM CHEMISTRY 2013. [DOI: 10.1016/b978-0-12-408099-7.00003-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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21
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Stopera C, Maiti B, Morales JA. H++NO(vi=0)→H++NO(vf=0–2) at ELab=30eV with canonical and Morse coherent states. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.09.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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22
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Stopera C, Maiti B, Grimes TV, McLaurin PM, Morales JA. Dynamics of H+ + CO at ELab = 30 eV. J Chem Phys 2012; 136:054304. [PMID: 22320739 DOI: 10.1063/1.3678014] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
- Christopher Stopera
- Department of Chemistry and Biochemistry, Texas Tech University, P.O. Box 41061, Lubbock, Texas 79409-1061, USA
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Stopera C, Maiti B, Grimes TV, McLaurin PM, Morales JA. Dynamics of H+ + N2 at ELab = 30 eV. J Chem Phys 2011; 134:224308. [PMID: 21682515 DOI: 10.1063/1.3598511] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Affiliation(s)
- Christopher Stopera
- Department of Chemistry and Biochemistry, Texas Tech University, PO Box 41061, Lubbock, Texas 79409-1061, USA
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Errea LF, Illescas C, Macías A, Méndez L, Pons B, Rabadán I, Riera A. Influence of nuclear exchange on nonadiabatic electron processes in H(+)+H2 collisions. J Chem Phys 2010; 133:244307. [PMID: 21197993 DOI: 10.1063/1.3518417] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
H(+)+H(2) collisions are studied by means of a semiclassical approach that explicitly accounts for nuclear rearrangement channels in nonadiabatic electron processes. A set of classical trajectories is used to describe the nuclear motion, while the electronic degrees of freedom are treated quantum mechanically in terms of a three-state expansion of the collision wavefunction. We describe electron capture and vibrational excitation, which can also involve nuclear exchange and dissociation, in the E = 2-1000 eV impact energy range. We compare dynamical results obtained with two parametrizations of the potential energy surface of H(3)(+) ground electronic state. Total cross sections for E > 10 eV agree with previous results using a vibronic close-coupling expansion, and with experimental data for E < 10 eV. Additionally, some prototypical features of both nuclear and electron dynamics at low E are discussed.
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Affiliation(s)
- L F Errea
- Laboratorio Asociado al CIEMAT de Física Atómica y Molecular en Plasmas de Fusión, Departamento de Química, Universidad Autónoma de Madrid, Madrid-28049, Spain
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25
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Morales JA. Some coherent-states aspects of the electron nuclear dynamics theory: past and present. Mol Phys 2010. [DOI: 10.1080/00268976.2010.512568] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Hajgató B, Deleuze MS, Morini F. Probing Nuclear Dynamics in Momentum Space: A New Interpretation of (e, 2e) Electron Impact Ionization Experiments on Ethanol. J Phys Chem A 2009; 113:7138-54. [DOI: 10.1021/jp9027029] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Balázs Hajgató
- Research Group of Theoretical Chemistry, Department SBG, Hasselt University, Agoralaan Gebouw D, B-3590 Diepenbeek, Belgium, and Eenheid Algemene Chemie, Vrije Universiteit Brussel, Faculteit Wetenschappen, Pleinlaan 2, B-1050 Brussels, Belgium
| | - Michael S. Deleuze
- Research Group of Theoretical Chemistry, Department SBG, Hasselt University, Agoralaan Gebouw D, B-3590 Diepenbeek, Belgium, and Eenheid Algemene Chemie, Vrije Universiteit Brussel, Faculteit Wetenschappen, Pleinlaan 2, B-1050 Brussels, Belgium
| | - Filippo Morini
- Research Group of Theoretical Chemistry, Department SBG, Hasselt University, Agoralaan Gebouw D, B-3590 Diepenbeek, Belgium, and Eenheid Algemene Chemie, Vrije Universiteit Brussel, Faculteit Wetenschappen, Pleinlaan 2, B-1050 Brussels, Belgium
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29
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Coherent-states dynamics of the H++HF reaction at ELab=30eV: A complete electron nuclear dynamics investigation. Chem Phys 2007. [DOI: 10.1016/j.chemphys.2007.07.033] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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30
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Barragán P, Errea LF, Macías A, Méndez L, Rabadán I, Riera A. A study of conical intersections for the H3(+) system. J Chem Phys 2007; 124:184303. [PMID: 16709102 DOI: 10.1063/1.2193516] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A parametrization of the three asymptotic conical intersections between the energies of the H3(+) ground state and the first excited singlet state is presented. The influence of an additional, fourth conical intersection between the first and second excited states at the equilateral geometry on the connection between the three conical regions is studied, for both diatomics-in-molecules and ab initio molecular data.
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Affiliation(s)
- P Barragán
- Laboratorio Asociado al CIEMAT de Física Atómica y Molecular en Plasmas de Fusión, Departamento de Química, Universidad Autónoma de Madrid, 28049 Madrid, Spain
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Barragán P, Errea LF, Macías A, Méndez L, Rabadán I, Riera A, Lucas JM, Aguilar A. Study of ab initio molecular data for inelastic and reactive collisions involving the H3+ quasimolecule. J Chem Phys 2006; 121:11629-38. [PMID: 15634128 DOI: 10.1063/1.1814936] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The lowest two ab initio potential energy surfaces (PES), and the corresponding nonadiabatic couplings between them, have been obtained for the H3+ system; the molecular data are compared to those calculated with the diatomic in molecules (DIM) method. The form of the couplings is discussed in terms of the topology of the molecular structure of the triatomic. The method of Baer is employed to generate "diabatic" states and the residual nonadiabatic couplings are calculated. The ab initio results for these are markedly different from the corresponding DIM data, and show the need to consider the third PES.
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Affiliation(s)
- P Barragán
- Laboratorio Asociado al CIEMAT de Física Atómica y Molecular en Plasmas de Fusión, Departamento de Química, Universidad Autónoma de Madrid, 28049-Madrid, Spain
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33
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Tsereteli K, Yan YA, Morales JA. Coherent states/density functional theory approach to molecular dynamics. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2005.12.035] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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34
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Morales JA, Maiti B, Yan Y, Tsereteli K, Laraque J, Addepalli S, Myers C. Coherent-states dynamics of the H++C2H2 reaction at ELab=30eV: A complete electron nuclear dynamics investigation. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.08.086] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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35
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Cabrera-Trujillo R, Öhrn Y, Deumens E, Sabin JR. Application of the END Theory to the H + D2 → HD + D Reaction. J Phys Chem A 2004. [DOI: 10.1021/jp0488517] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- R. Cabrera-Trujillo
- Quantum Theory Project, Departments of Physics and Chemistry, University of Florida, Gainesville, Florida 32611-8435
| | - Y. Öhrn
- Quantum Theory Project, Departments of Physics and Chemistry, University of Florida, Gainesville, Florida 32611-8435
| | - E. Deumens
- Quantum Theory Project, Departments of Physics and Chemistry, University of Florida, Gainesville, Florida 32611-8435
| | - J. R. Sabin
- Quantum Theory Project, Departments of Physics and Chemistry, University of Florida, Gainesville, Florida 32611-8435
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36
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Calculation of Cross Sections in Electron-Nuclear Dynamics. ADVANCES IN QUANTUM CHEMISTRY 2004. [DOI: 10.1016/s0065-3276(04)47015-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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37
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Malinovskaya SA, Cabrera-Trujillo R, Sabin JR, Deumens E, Öhrn Y. Dynamics of proton-acetylene collisions at 30 eV. J Chem Phys 2002. [DOI: 10.1063/1.1485726] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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38
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Coutinho-Neto M, Deumens E, Öhrn Y. Abstraction and exchange mechanisms for the D2+NH3+ reaction at hyperthermal collision energies. J Chem Phys 2002. [DOI: 10.1063/1.1434991] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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39
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Blass A, Deumens E, Öhrn Y. Rovibrational analysis of molecular collisions using coherent states. J Chem Phys 2001. [DOI: 10.1063/1.1412255] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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40
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Affiliation(s)
- Erik Deumens
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435
| | - Yngve Öhrn
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611-8435
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41
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Zhao Y, Yokojima S, Chen G. Reduced density matrix and combined dynamics of electrons and nuclei. J Chem Phys 2000. [DOI: 10.1063/1.1288374] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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42
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Cabrera-Trujillo R, Sabin JR, Ohrn Y, Deumens E. Charge exchange and threshold effect in the energy loss of slow projectiles. PHYSICAL REVIEW LETTERS 2000; 84:5300-5303. [PMID: 10990928 DOI: 10.1103/physrevlett.84.5300] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/1999] [Indexed: 05/23/2023]
Abstract
In this Letter, we study charge exchange and energy loss of protons, taking into account the dynamics of both nuclei and electrons during the collision with atomic hydrogen, helium, and neon targets. We obtain the nuclear and electronic contributions to the energy loss as well as the charge exchange probability, and the total cross section for charge exchange. We find a low-energy threshold in the electronic energy loss due to the quantization of excited states. We find that the electronic stopping cross section is not proportional to the velocity of the projectile at very low velocities (energies), as is predicted by electron gas theory. This confirms recent experimental results.
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Affiliation(s)
- R Cabrera-Trujillo
- Quantum Theory Project, Departments of Physics and Chemistry, University of Florida, Gainesville, Florida 32611-8435, USA
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43
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Öhrn Y, Deumens E. Toward an ab Initio Treatment of the Time-Dependent Schrödinger Equation of Molecular Systems. J Phys Chem A 1999. [DOI: 10.1021/jp992434q] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yngve Öhrn
- Quantum Theory Project, Departments of Chemistry and Physics, University of Florida, Gainesville, Florida 32611-8435
| | - Erik Deumens
- Quantum Theory Project, Departments of Chemistry and Physics, University of Florida, Gainesville, Florida 32611-8435
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Last I, Gilibert M, Baer M. A three-dimensional quantum mechanical study of the H+H2+→H2+H+ system: Competition between chemical exchange and inelastic processes. J Chem Phys 1997. [DOI: 10.1063/1.474498] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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