1
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Zhao H, Sun Z. Theoretical Development of the Interaction-Asymptotic Region Decomposition Method for Tetratomic Reactive Scattering. J Chem Theory Comput 2024; 20:1802-1810. [PMID: 38262035 DOI: 10.1021/acs.jctc.3c01368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2024]
Abstract
An accurate and efficient time-dependent wave packet method is proposed for solving the product state-resolved reaction probabilities of the tetratomic reactive system. In this method, the entire scattering process is divided into the interaction region and multiple asymptotic regions, sharing the same spirit as the interaction-asymptotic region decomposition (IARD) approach in a triatomic reactive scattering process. The hyperspherical coordinate is adopted in the interaction region, while the corresponding Jacobi coordinate is employed in each asymptotic region. Therefore, in this IARD method, the "coordinate problem", the difficulty of expressing the wave function in the entire region using a single coordinate system, can be effectively avoided, and only a very small number of the grid points (or the basis functions) are required. For the numerical illustration, the typical tetratomic reaction H2 + OH with zero total angular momentum is calculated, and compared with other quantum wave packet methods. Our proposed IARD method for the tetratomic reactive system is much more efficient and accurate.
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Affiliation(s)
- Hailin Zhao
- Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, P.R. China 116023
| | - Zhigang Sun
- Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, P.R. China 116023
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2
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Xu X, Chen J, Liu S, Zhang DH. Differential Cross Sections for the H + H 2S → H 2 + SH Reaction: A Full-Dimensional State-to-State Quantum Dynamics Study. J Phys Chem A 2023; 127:9513-9519. [PMID: 37921345 DOI: 10.1021/acs.jpca.3c05844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
We utilized the time-dependent wave packet approach to compute the first full-dimensional (6D) state-to-state differential cross sections (DCSs) for the title reaction with the initial nonrotating H2S in the ground and the (100) and (001) vibrational excited states. It is found that the fundamental symmetric and asymmetric stretching excitations of H2S exhibit almost the same influence on the DCS, but unlike the H + H2O → H2 + OH reaction, they greatly increase the vibrational excitation of both the H2 and SH products. The hot vibrational state distributions of H2 are consistent with the prediction of product energy disposal by Polanyi's rules for an early barrier reaction. Because the incident H atom reacts strongly with both the ground and excited S-H states, the large populations of product SH(v2 = 1), which are very close to the relative reactivity of the initial S-H(v = 0) state, can still be explained by the local mode picture for H2S and the nonreacting SH bond's spectator nature.
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Affiliation(s)
- Xin Xu
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Chen
- State Key Laboratory of Structure Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, Fujian, China
| | - Shu Liu
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Dong H Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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3
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Xin R, Pan M, Song H, Yang M. Mode- and Bond-Selected Reaction of H with Local Mode Molecule HDS. J Phys Chem A 2020; 124:10162-10170. [PMID: 33252233 DOI: 10.1021/acs.jpca.0c09415] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Understanding mode- and bond-selected dynamics of elementary chemical reactions is of central importance in molecular reaction dynamics. The initial state-selected time-dependent wave packet method is employed to study the mode and bond selectivity, isotopic branching ratio, and temperature dependence of rate constants of the two-channel reaction of H with local mode molecule HDS. For the abstraction channel, fundamental excitation of the HS (DS) bond of the reactant HDS significantly enhances the H-abstraction (D-abstraction) reaction, whose efficacy is higher than the same amount of translational energy except at low energies just above the energy threshold. This is in sharp contrast to the prediction of Polanyi rules: translational energy is more efficient than vibrational energy in enhancing a reaction with an early barrier. The recent sudden vector projection model is then applied to rationalize the observed mode specificity, which, however, shows that the translational mode vector has a larger coupling with the reaction coordinate than the stretching vector of the active bond, implying a reversed relative efficacy on promoting the reaction as well. In contrast, the mode and bond specificity for the exchange channel is not as strong as for the abstraction channel due to the regulation of the shallow well along the reaction path.
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Affiliation(s)
- Rong Xin
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Mengyi Pan
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Minghui Yang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
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4
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5
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Zhang Z, Gatti F, Zhang DH. Full dimensional quantum mechanical calculations of the reaction probability of the H + NH3 collision based on a mixed Jacobi and Radau description. J Chem Phys 2019; 150:204301. [DOI: 10.1063/1.5096047] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Zhaojun Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
| | - Fabien Gatti
- ISMO, Institut des Sciences Moléculaires d’Orsay—UMR 8214 CNRS/Université Paris-Sud, F-91405 Orsay, France
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
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6
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Xu X, Chen J, Liu S, Zhang DH. An ab initio
-based global potential energy surface for the SH3
system and full-dimensional state-to-state quantum dynamics study for the H2
+ HS → H2
S + H reaction. J Comput Chem 2018; 40:1151-1160. [DOI: 10.1002/jcc.25746] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2018] [Revised: 10/11/2018] [Accepted: 10/12/2018] [Indexed: 11/05/2022]
Affiliation(s)
- Xin Xu
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics; Chinese Academy of Sciences; Dalian 116023 China
| | - Jun Chen
- Collaborative Innovation Center of Chemistry for Energy Materials (iChEM); College of Chemistry and Chemical Engineering, Xiamen University; Xiamen 361005 China
| | - Shu Liu
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics; Chinese Academy of Sciences; Dalian 116023 China
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics; Chinese Academy of Sciences; Dalian 116023 China
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7
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Zheng R, Zhu Y, Song H. Mode specific dynamics in bond selective reaction O′(3P) + HOD → O′H + OD/O′D + OH. J Chem Phys 2018; 149:054304. [DOI: 10.1063/1.5037492] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Rui Zheng
- School of Mathematics and Statistics, North China University of Water Resources and Electric Power, Zhengzhou 450011, China
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Yongfa Zhu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
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8
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Sun P, Chen J, Liu S, Zhang DH. Accurate integral cross sections for the H + CO2 → OH + CO reaction. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.07.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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9
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Yuan M, Li W, Yuan J. A new global analytical potential energy surface of NaH2+ system and dynamical calculation for H(2S) + NaH+(X2Σ+) → Na+(1S) + H2(X1Σg+) reaction. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.04.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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10
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Wang XG, Carrington T. Using monomer vibrational wavefunctions to compute numerically exact (12D) rovibrational levels of water dimer. J Chem Phys 2018; 148:074108. [DOI: 10.1063/1.5020426] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Xiao-Gang Wang
- Chemistry Department, Queen’s University, Kingston, Ontario K7L 3N6, Canada
| | - Tucker Carrington
- Chemistry Department, Queen’s University, Kingston, Ontario K7L 3N6, Canada
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11
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Zhao B, Manthe U, Guo H. Fermi resonance controlled product branching in the H + HOD reaction. Phys Chem Chem Phys 2018; 20:17029-17037. [DOI: 10.1039/c8cp02279h] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Excitation of the first overtone of bending mode results in a significant enhancement in the HD + OH channel due to the 1 : 2 Fermi resonance between the fundamental OD stretch and the first overtone of the bend.
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Affiliation(s)
- Bin Zhao
- Theoretische Chemie
- Fakultät für Chemie
- Universität Bielefeld
- D-33615 Bielefeld
- Germany
| | - Uwe Manthe
- Theoretische Chemie
- Fakultät für Chemie
- Universität Bielefeld
- D-33615 Bielefeld
- Germany
| | - Hua Guo
- Department of Chemistry and Chemical Biology
- University of New Mexico
- Albuquerque
- USA
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12
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Ghosh S, Sharma R, Adhikari S, Varandas AJC. 3D time-dependent wave-packet approach in hyperspherical coordinates for the H + O2 reaction on the CHIPR and DMBE IV potential energy surfaces. Phys Chem Chem Phys 2018; 20:478-488. [DOI: 10.1039/c7cp06254k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
3D wavepacket quantum dynamics methodology ICS calculation of H + O2 reaction on the CHIPR and DMBE IV PESs by J-shifting scheme.
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Affiliation(s)
- Sandip Ghosh
- Department of Physical Chemistry
- Indian Association for the Cultivation of Science
- Kolkata-700032
- India
| | - Rahul Sharma
- Department of Chemistry
- St. Xaviers’ College
- Kolkata-700016
- India
| | - Satrajit Adhikari
- Department of Physical Chemistry
- Indian Association for the Cultivation of Science
- Kolkata-700032
- India
| | - António J. C. Varandas
- Departamento de Química
- and Centro de Química
- Universidade de Coimbra
- 3004-535 Coimbra
- Portugal
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13
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Zhao B, Sun Z, Guo H. State-to-state mode specificity in H + DOH(νOH = 1) → HD + OH(ν2 = 0) reaction: vibrational non-adiabaticity or local-mode excitation? Phys Chem Chem Phys 2018; 20:191-198. [DOI: 10.1039/c7cp07199j] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
State-of-the-art full dimensional state-to-state quantum dynamics reveal a startling observation in which the DOH(νOH = 1) molecule reacts with a H atom to produce a vibrationless OH product. This interesting observation is attributed to a small OD excited local-mode component in the reactant wavefunction.
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Affiliation(s)
- Bin Zhao
- Department of Chemistry and Chemical Biology
- University of New Mexico
- Albuquerque
- USA
| | - Zhigang Sun
- Center for Theoretical and Computational Chemistry
- and State Key Laboratory of Molecular Reaction Dynamics
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
| | - Hua Guo
- Department of Chemistry and Chemical Biology
- University of New Mexico
- Albuquerque
- USA
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14
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Zhao B, Manthe U. A transition-state based rotational sudden (TSRS) approximation for polyatomic reactive scattering. J Chem Phys 2017; 147:144104. [DOI: 10.1063/1.5003226] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Bin Zhao
- Theoretische Chemie, Fakultät für Chemie, Universität Bielefeld, Universitätsstr. 25, D-33615 Bielefeld,
Germany
| | - Uwe Manthe
- Theoretische Chemie, Fakultät für Chemie, Universität Bielefeld, Universitätsstr. 25, D-33615 Bielefeld,
Germany
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15
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Sun P, Chen J, Liu S, Zhang DH. A full-dimensional time-dependent wave packet study of the H + CO2→ OH + CO reaction. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.02.083] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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16
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Qi J, Lu D, Song H, Li J, Yang M. Quantum and quasiclassical dynamics of the multi-channel H + H2S reaction. J Chem Phys 2017; 146:124303. [DOI: 10.1063/1.4978685] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ji Qi
- Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Dandan Lu
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Hongwei Song
- Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Jun Li
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Minghui Yang
- Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
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17
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Zhao ZQ, Liu S, Zhang DH. Differential Cross Sections for the H+D2O→HD+OD Reaction: a Full Dimensional State-to-State Quantum Dynamics Study. CHINESE J CHEM PHYS 2017. [DOI: 10.1063/1674-0068/30/cjcp1608163] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Zhi-qiang Zhao
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shu Liu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
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18
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Zhao B, Sun Z, Guo H. A reactant-coordinate-based approach to state-to-state differential cross sections for tetratomic reactions. J Chem Phys 2016; 145:184106. [DOI: 10.1063/1.4966966] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bin Zhao
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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19
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Zhao Z, Liu S, Zhang DH. State-to-state differential cross sections for a four-atom reaction: H2+ OH → H2O + H in full dimensions. J Chem Phys 2016; 145:134301. [DOI: 10.1063/1.4963798] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Zhiqiang Zhao
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing 100049, People’s Republic of China
| | - Shu Liu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
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20
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Zhao B, Sun Z, Guo H. State-to-state differential cross sections for D2 + OH → D + DOH reaction: Influence of vibrational excitation of OH reactant. J Chem Phys 2016; 145:134308. [DOI: 10.1063/1.4964322] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bin Zhao
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics, and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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21
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Zhao B, Sun Z, Guo H. State-to-state mode selectivity in the HD + OH reaction: Perspectives from two product channels. J Chem Phys 2016; 144:214303. [DOI: 10.1063/1.4952764] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bin Zhao
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Zhigang Sun
- Center for Theoretical and Computational Chemistry and State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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22
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Manolopoulos DE. Editorial: Remembering John C. Light. II. Scientific contributions. J Chem Phys 2016; 144:150402. [PMID: 27389198 DOI: 10.1063/1.4947000] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- David E Manolopoulos
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, Oxford University, South Parks Road, Oxford OX1 3QZ, United Kingdom
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23
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Zhao B, Sun Z, Guo H. A reactant-coordinate-based wave packet method for full-dimensional state-to-state quantum dynamics of tetra-atomic reactions: Application to both the abstraction and exchange channels in the H + H2O reaction. J Chem Phys 2016; 144:064104. [DOI: 10.1063/1.4941671] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bin Zhao
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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24
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Song H, Lee SY, Lu Y, Guo H. Full-Dimensional Quantum Dynamical Studies of the Cl + HOD → HCl/DCl + OD/OH Reaction: Bond Selectivity and Isotopic Branching Ratio. J Phys Chem A 2015; 119:12224-30. [DOI: 10.1021/acs.jpca.5b06230] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hongwei Song
- Division
of Chemistry and Biological Chemistry, School of Physical and Mathematical
Sciences, Nanyang Technological University, Singapore 637371, Singapore
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Soo-Ying Lee
- Division
of Chemistry and Biological Chemistry, School of Physical and Mathematical
Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Yunpeng Lu
- Division
of Chemistry and Biological Chemistry, School of Physical and Mathematical
Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Hua Guo
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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25
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Song H, Guo H. Vibrational and Rotational Mode Specificity in The Cl + H2O → HCl + OH Reaction: A Quantum Dynamical Study. J Phys Chem A 2015; 119:6188-94. [DOI: 10.1021/acs.jpca.5b03740] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hongwei Song
- Department of Chemistry
and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Hua Guo
- Department of Chemistry
and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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26
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Fu B, Zhang DH. A full-dimensional quantum dynamics study of the mode specificity in the H + HOD abstraction reaction. J Chem Phys 2015; 142:064314. [DOI: 10.1063/1.4907918] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bina Fu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
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27
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Li J, Song H, Guo H. Insights into the bond-selective reaction of Cl + HOD(nOH) → HCl + OD. Phys Chem Chem Phys 2015; 17:4259-67. [DOI: 10.1039/c4cp05165c] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The theoretical study of the title reaction reveals strong bond selectivity, vibrational enhancement, and unique product distributions, in agreement with the experiment.
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Affiliation(s)
- Jun Li
- School of Chemistry and Chemical Engineering
- Chongqing University
- Chongqing 400030
- China
- Department of Chemistry and Chemical Biology
| | - Hongwei Song
- Department of Chemistry and Chemical Biology
- University of New Mexico
- Albuquerque
- USA
| | - Hua Guo
- Department of Chemistry and Chemical Biology
- University of New Mexico
- Albuquerque
- USA
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28
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Guo H, Jiang B. The sudden vector projection model for reactivity: mode specificity and bond selectivity made simple. Acc Chem Res 2014; 47:3679-85. [PMID: 25393632 DOI: 10.1021/ar500350f] [Citation(s) in RCA: 173] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
CONSPECTUS: Mode specificity is defined by the differences in reactivity due to excitations in various reactant modes, while bond selectivity refers to selective bond breaking in a reaction. These phenomena not only shed light on reaction dynamics but also open the door for laser control of reactions. The existence of mode specificity and bond selectivity in a reaction indicates that not all forms of energy are equivalent in promoting the reactivity, thus defying a statistical treatment. They also allow the enhancement of reactivity and control product branching ratio. As a result, they are of central importance in chemistry. This Account discusses recent advances in our understanding of these nonstatistical phenomena. In particular, the newly proposed sudden vector projection (SVP) model and its applications are reviewed. The SVP model is based on the premise that the collision in many direct reactions is much faster than intramolecular vibrational energy redistribution in the reactants. In such a sudden limit, the coupling of a reactant mode with the reaction coordinate at the transition state, which dictates its ability to promote the reaction, is approximately quantified by the projection of the former onto the latter. The SVP model can be considered as a generalization of the venerable Polanyi's rules, which are based on the location of the barrier. The SVP model is instead based on properties of the saddle point and as a result capable of treating the translational, rotational, and multiple vibrational modes in reactions involving polyatomic reactants. In case of surface reactions, the involvement of surface atoms can also be examined. Taking advantage of microscopic reversibility, the SVP model has also been used to predict product energy disposal in reactions. This simple yet powerful rule of thumb has been successfully demonstrated in many reactions including uni- and bimolecular reactions in the gas phase and gas-surface reactions. The success of the SVP model underscores the importance of the transition state in controlling mode-specific and bond-selective chemistry.
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Affiliation(s)
- Hua Guo
- Department
of Chemistry and
Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Bin Jiang
- Department
of Chemistry and
Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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Zhao B, Sun Z, Guo H. Calculation of the state-to-state S-matrix for tetra-atomic reactions with transition-state wave packets: H2/D2 + OH → H/D + H2O/HOD. J Chem Phys 2014; 141:154112. [DOI: 10.1063/1.4898100] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bin Zhao
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Zhigang Sun
- Center for Theoretical and Computational Chemistry and State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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Liu S, Chen J, Fu B, Zhang DH. State-to-state quantum versus classical dynamics study of the OH + CO → H + CO2 reaction in full dimensions (J = 0): checking the validity of the quasi-classical trajectory method. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1558-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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31
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Zhao B, Zhang DH, Lee SY, Sun Z. Calculation of state-to-state cross sections for triatomic reaction by the multi-configuration time-dependent Hartree method. J Chem Phys 2014; 140:164108. [DOI: 10.1063/1.4872157] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
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32
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Jiang B, Guo H. Competition between abstraction and exchange channels in H + HCN reaction: Full-dimensional quantum dynamics. J Chem Phys 2013; 139:224310. [DOI: 10.1063/1.4840475] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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33
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Li J, Jiang B, Guo H. Permutation invariant polynomial neural network approach to fitting potential energy surfaces. II. Four-atom systems. J Chem Phys 2013; 139:204103. [DOI: 10.1063/1.4832697] [Citation(s) in RCA: 237] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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34
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Jiang B, Guo H. Control of Mode/Bond Selectivity and Product Energy Disposal by the Transition State: X + H2O (X = H, F, O(3P), and Cl) Reactions. J Am Chem Soc 2013; 135:15251-6. [DOI: 10.1021/ja408422y] [Citation(s) in RCA: 115] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Bin Jiang
- Department of Chemistry and
Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Hua Guo
- Department of Chemistry and
Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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Yao L, Han KL, Song HS, Zhang DH. Theoretical Study of the X+YCl (X, Y=H, D) Reactions. J CHIN CHEM SOC-TAIP 2013. [DOI: 10.1002/jccs.200300083] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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36
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Cvitaš MT, Althorpe SC. A Chebyshev method for state-to-state reactive scattering using reactant-product decoupling: OH + H2 → H2O + H. J Chem Phys 2013; 139:064307. [DOI: 10.1063/1.4817241] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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37
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Fu B, Zhang DH. Mode specificity in the H + H2O → H2+ OH reaction: A full-dimensional quantum dynamics study. J Chem Phys 2013; 138:184308. [DOI: 10.1063/1.4803695] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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38
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Chen J, Xu X, Xu X, Zhang DH. A global potential energy surface for the H2 + OH ↔ H2O + H reaction using neural networks. J Chem Phys 2013; 138:154301. [DOI: 10.1063/1.4801658] [Citation(s) in RCA: 139] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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39
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Jiang B, Xie D, Guo H. Vibrationally mediated bond selective dissociative chemisorption of HOD on Cu(111). Chem Sci 2013. [DOI: 10.1039/c2sc21393a] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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40
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Shimouchi A, Nose K, Mizukami T, Che DC, Shirai M. Molecular hydrogen consumption in the human body during the inhalation of hydrogen gas. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2013; 789:315-321. [PMID: 23852510 DOI: 10.1007/978-1-4614-7411-1_42] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Inhaling or ingesting hydrogen (H2) gas improves oxidative stress-induced damage in animal models and humans. We previously reported that H2 was consumed throughout the human body after the ingestion of H2-rich water and that the H2 consumption rate ([Formula: see text]) was 1.0 μmol/min/m(2) body surface area. To confirm this result, we evaluated [Formula: see text]during the inhalation of low levels of H2 gas. After measuring the baseline levels of exhaled H2 during room air breathing via a one-way valve and a mouthpiece, the subject breathed low levels (160 ppm) of H2 gas mixed with purified artificial air. The H2 levels of their inspired and expired breath were measured by gas chromatography using a semiconductor sensor. [Formula: see text] was calculated using a ventilation equation derived from the inspired and expired concentrations of O2/CO2/H2, and the expired minute ventilation volume, which was measured with a respiromonitor. As a result, [Formula: see text] was found to be approximately 0.7 μmol/min/m(2)BSA, which was compatible with the findings we obtained using H2-rich water. [Formula: see text] varied markedly when pretreatment fasting to reduce colonic fermentation was not employed, i.e., when the subject's baseline breath hydrogen level was 10 ppm or greater. Our H2 inhalation method might be useful for the noninvasive monitoring of hydroxyl radical production in the human body.
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Affiliation(s)
- Akito Shimouchi
- National Cerebral and Cardiovascular Research Center, Osaka, Japan.
| | - Kazutoshi Nose
- National Cerebral and Cardiovascular Research Center, Osaka, Japan
| | - Tomoe Mizukami
- National Cerebral and Cardiovascular Research Center, Osaka, Japan
| | - Dock-Chil Che
- Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan
| | - Mikiyasu Shirai
- National Cerebral and Cardiovascular Research Center, Osaka, Japan
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Enhancing dissociative chemisorption of H2O on Cu(111) via vibrational excitation. Proc Natl Acad Sci U S A 2012; 109:10224-7. [PMID: 22685207 DOI: 10.1073/pnas.1203895109] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The dissociative chemisorption of water is an important step in many heterogeneous catalytic processes. Here, the mode selectivity of this process was examined quantum mechanically on a realistic potential energy surface determined by fitting planewave density functional calculations spanning a large configuration space. The quantum dynamics of the surface reaction were characterized by a six-dimensional model including all important internal coordinates of H(2)O and its distance to the surface. It was found that excitations in all three vibrational modes are capable of enhancing reactivity more effectively than increasing translational energy, consistent with the "late" transition state in the reaction path.
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42
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Joubert-Doriol L, Lasorne B, Gatti F, Schröder M, Vendrell O, Meyer HD. Suitable coordinates for quantum dynamics: Applications using the multiconfiguration time-dependent Hartree (MCTDH) algorithm. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2011.12.015] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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43
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Fu B, Zhang DH. Full-dimensional quantum dynamics study of exchange processes for the D + H2O and D + HOD reactions. J Chem Phys 2012; 136:194301. [DOI: 10.1063/1.4718386] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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44
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Liu S, Xu X, Zhang DH. Time-dependent wave packet theory for state-to-state differential cross sections of four-atom reactions in full dimensions: Application to the HD + OH → H2O + D reaction. J Chem Phys 2012; 136:144302. [DOI: 10.1063/1.3701266] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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45
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Fu B, Zhang DH. Full-Dimensional Quantum Dynamics Study of the H + H2O and H + HOD Exchange Reactions. J Phys Chem A 2012; 116:820-5. [DOI: 10.1021/jp211096q] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Bina Fu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, P. R. China 116023
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, P. R. China 116023
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46
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Liu S, Xiao C, Wang T, Chen J, Yang T, Xu X, Zhang DH, Yang X. The dynamics of the D2 + OH → HOD + D reaction: A combined theoretical and experimental study. Faraday Discuss 2012; 157:101-11; discussion 113-40. [DOI: 10.1039/c2fd20018j] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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47
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Meng F, Yan W, Wang D. Quantum dynamics study of the Cl + CH4 → HCl + CH3 reaction: reactive resonance, vibrational excitation reactivity, and rate constants. Phys Chem Chem Phys 2012; 14:13656-62. [DOI: 10.1039/c2cp41917c] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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48
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Fu B, Zhou Y, Zhang DH. Shape resonance in the H + D2O → D + HOD reaction: a full-dimensional quantum dynamics study. Chem Sci 2012. [DOI: 10.1039/c1sc00684c] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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49
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50
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WANG MINGLIANG, ZHANG JOHNZH. MIXED QUANTUM-CLASSICAL SEMI-RIGID VIBRATING ROTOR TARGET MODEL FOR ATOM-POLYATOM REACTION: O(3P) + CH4 → CH3 + OH. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s0219633603000562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In this paper, a mixed quantum-classical semi-rigid vibrating rotor target (QC-SVRT) model has been applied to study the reaction O(3P) + CH4 → CH3 + OH based on H + CH4 potential surface of Jordan and Gilbert. In this approach, the relative translational motion between atom and polyatom molecules is treated classically while the others are treated quantum mechanically. The reaction probabilities and rate constants were carried out using the QC-SVRT approach. It was found that the QC-SVRT results are in good agreement with the quantum results and the reaction threshold is correctly produced in the present calculation. The application of this QC-SVRT approach makes it more practical to extend quantum reaction dynamics calculation to larger molecules and more complex systems without incurring significant loss of important quantum effects.
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Affiliation(s)
- MING-LIANG WANG
- Department of Chemistry, New York University, New York, NY 10003, USA
| | - JOHN Z. H. ZHANG
- Department of Chemistry, New York University, New York, NY 10003, USA
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