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Jin J, Reichman DR. Perturbative Expansion in Reciprocal Space: Bridging Microscopic and Mesoscopic Descriptions of Molecular Interactions. J Phys Chem B 2024; 128:1061-1078. [PMID: 38232134 DOI: 10.1021/acs.jpcb.3c06048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
Determining the Fourier representation of various molecular interactions is important for constructing density-based field theories from a microscopic point of view, enabling a multiscale bridge between microscopic and mesoscopic descriptions. However, due to the strongly repulsive nature of short-ranged interactions, interparticle interactions cannot be formally defined in Fourier space, which renders coarse-grained (CG) approaches in k-space somewhat ambiguous. In this paper, we address this issue by designing a perturbative expansion of pair interactions in reciprocal space. Our perturbation theory, starting from reciprocal space, elucidates the microscopic origins underlying zeroth-order (long-range attractions) and divergent repulsive interactions from higher order contributions. We propose a systematic framework for constructing a faithful Fourier-space representation of molecular interactions, capturing key structural correlations in various systems, including simple model systems and molecular CG models of liquids. Building upon the Ornstein-Zernike equation, our approach can be combined with appropriate closure relations, and to further improve the closure approximations, we develop a bottom-up parameterization strategy for inferring the bridge function from microscopic statistics. By incorporating the bridge function into the Fourier representation, our findings suggest a systematic, bottom-up approach to performing coarse-graining in reciprocal space, leading to the systematic construction of a bottom-up classical field theory of complex aqueous systems.
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Affiliation(s)
- Jaehyeok Jin
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - David R Reichman
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
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2
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Amano KI, Furukawa S, Kubo Y, Nakamura Y, Ishii R, Tanase A, Maebayashi M, Hayashi T, Nishi N, Sakka T. Nonadditivities of the Particle Sizes Hidden in Model Pair Potentials and Their Effects on Physical Adsorptions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:12999-13007. [PMID: 37658821 DOI: 10.1021/acs.langmuir.3c00968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/05/2023]
Abstract
It is important to understand the mechanism of colloidal particle assembly near a substrate for development of drug delivery systems, micro-/nanorobots, batteries, heterogeneous catalysts, paints, and cosmetics. Understanding the mechanism is also important for crystallization of the colloidal particles and proteins. In this study, we calculated the physical adsorption of colloidal particles on a flat wall mainly using the integral equation theory, wherein small and large colloidal particles were employed. In the calculation system, like-charged electric double-layer potentials were used as pair potentials. In some cases, it was found that the small particles are more easily adsorbed. This result is unusual from the viewpoint of the Asakura-Oosawa theory, and we call it a "reversal phenomenon". Theoretical analysis revealed that the reversal phenomenon originates from the nonadditivities of the particle sizes. Using the knowledge obtained from this study, we invented a method to analyze the size nonadditivity hidden in model pair potentials. The method will be useful for confirmation of various simulation results regarding the adsorption and development of force fields for colloidal particles, proteins, and solutes.
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Affiliation(s)
- Ken-Ichi Amano
- Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya 468-8502, Japan
| | - Satoshi Furukawa
- Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Yuto Kubo
- Interdisciplinary Program of Biomedical Engineering, Assistive Technology, and Art and Sports Sciences, Faculty of Engineering, Niigata University, Niigata 950-2181, Japan
| | - Yuka Nakamura
- Interdisciplinary Program of Biomedical Engineering, Assistive Technology, and Art and Sports Sciences, Faculty of Engineering, Niigata University, Niigata 950-2181, Japan
| | - Rina Ishii
- Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya 468-8502, Japan
| | - Ayane Tanase
- Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya 468-8502, Japan
| | - Masahiro Maebayashi
- Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya 468-8502, Japan
| | - Tomohiko Hayashi
- Interdisciplinary Program of Biomedical Engineering, Assistive Technology, and Art and Sports Sciences, Faculty of Engineering, Niigata University, Niigata 950-2181, Japan
| | - Naoya Nishi
- Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Tetsuo Sakka
- Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
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3
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Hubman A, Urbic T. Structure and thermodynamics of a 2D Lennard-Jones hexagonal fluid. MOLECULAR SIMULATION 2022; 48:1435-1444. [PMID: 37727614 PMCID: PMC10508885 DOI: 10.1080/08927022.2022.2096219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 06/20/2022] [Indexed: 10/17/2022]
Abstract
The thermodynamic and structural properties of the 2D hexagonal soft-sites fluid are examined by integral equation theory benchmarked against extensive Monte Carlo simulations. Hexamers are built of six equal Lennard-Jones segments. Site-site integral equation theory is used to compute site-site correlation functions, excess internal energies and isotherms over a wide range of conditions and compared with results obtained from Monte Carlo simulations. Various approaches for computing the pressure are discussed as well. Satisfactory qualitative agreement between theory and simulations is found with details depending on the applied closure relation.
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Affiliation(s)
- Anže Hubman
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia
| | - Tomaz Urbic
- Faculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia
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4
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Goodall REA, Lee AA. Data-driven approximations to the bridge function yield improved closures for the Ornstein-Zernike equation. SOFT MATTER 2021; 17:5393-5400. [PMID: 33969369 DOI: 10.1039/d1sm00402f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
A key challenge for soft materials design and coarse-graining simulations is determining interaction potentials between components that give rise to desired condensed-phase structures. In theory, the Ornstein-Zernike equation provides an elegant framework for solving this inverse problem. Pioneering work in liquid state theory derived analytical closures for the framework. However, these analytical closures are approximations, valid only for specific classes of interaction potentials. In this work, we combine the physics of liquid state theory with machine learning to infer a closure directly from simulation data. The resulting closure is more accurate than commonly used closures across a broad range of interaction potentials.
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Affiliation(s)
| | - Alpha A Lee
- Cavendish Laboratory, University of Cambridge, Cambridge, UK.
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5
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Craven GT, Lubbers N, Barros K, Tretiak S. Machine learning approaches for structural and thermodynamic properties of a Lennard-Jones fluid. J Chem Phys 2020; 153:104502. [DOI: 10.1063/5.0017894] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Affiliation(s)
- Galen T. Craven
- Theoretical Division and Center for Nonlinear Studies (CNLS), Los Alamos National Laboratory, Los Alamos, New Mexico 87544, USA
| | - Nicholas Lubbers
- Computer, Computational, and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87544, USA
| | - Kipton Barros
- Theoretical Division and Center for Nonlinear Studies (CNLS), Los Alamos National Laboratory, Los Alamos, New Mexico 87544, USA
| | - Sergei Tretiak
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87544, USA
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6
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Guo Z, Johnson JK, Labík S, Henderson D. Test of the Duh-Haymet-Henderson theory for mixtures: cavity correlation functions and excess volumes. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1656348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Zheng Guo
- Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA, USA
| | - J. Karl Johnson
- Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA, USA
| | - Stanislav Labík
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Czech Republic
| | - Douglas Henderson
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, USA
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7
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Nakamura Y, Arai S, Kinoshita M, Yoshimori A, Akiyama R. Reduced density profile of small particles near a large particle: Results of an integral equation theory with an accurate bridge function and a Monte Carlo simulation. J Chem Phys 2019; 151:044506. [PMID: 31370562 DOI: 10.1063/1.5100040] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Solute-solvent reduced density profiles of hard-sphere fluids were calculated by using several integral equation theories for liquids. The traditional closures, Percus-Yevick (PY) and the hypernetted-chain (HNC) closures, as well as the theories with bridge functions, Verlet, Duh-Henderson, and Kinoshita (named MHNC), were used for the calculation. In this paper, a one-solute hard-sphere was immersed in a one-component hard-sphere solvent and various size ratios were examined. The profiles between the solute and solvent particles were compared with those calculated by Monte Carlo simulations. The profiles given by the integral equations with the bridge functions were much more accurate than those calculated by conventional integral equation theories, such as the Ornstein-Zernike (OZ) equation with the PY closure. The accuracy of the MHNC-OZ theory was maintained even when the particle size ratio of solute to solvent was 50. For example, the contact values were 5.7 (Monte Carlo), 5.6 (MHNC), 7.8 (HNC), and 4.5 (PY), and the first minimum values were 0.48 (Monte Carlo), 0.46 (MHNC), 0.54 (HNC), and 0.40 (PY) when the packing fraction of the hard-sphere solvent was 0.38 and the size ratio was 50. The asymptotic decay and the oscillation period for MHNC-OZ were also very accurate, although those given by the HNC-OZ theory were somewhat faster than those obtained by Monte Carlo simulations.
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Affiliation(s)
- Yuka Nakamura
- Department of Engineering Science, The University of Electro-Communications, Tokyo 182-8585, Japan
| | - Shota Arai
- Department of Physics, Niigata University, Niigata 950-2181, Japan
| | | | - Akira Yoshimori
- Department of Physics, Niigata University, Niigata 950-2181, Japan
| | - Ryo Akiyama
- Department of Chemistry, Kyushu University, Fukuoka 819-0395, Japan
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8
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Zhou Y, Schweizer KS. Local structure, thermodynamics, and phase behavior of asymmetric particle mixtures: Comparison between integral equation theories and simulation. J Chem Phys 2019; 150:214902. [PMID: 31176349 DOI: 10.1063/1.5099369] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Affiliation(s)
- Yuxing Zhou
- Department of Materials Science, University of Illinois, 1304 West Green Street, Urbana, Illinois 61801-3028, USA
- Materials Research Laboratory, University of Illinois, 1304 West Green Street, Urbana, Illinois 61801-3028, USA
| | - Kenneth S. Schweizer
- Department of Materials Science, University of Illinois, 1304 West Green Street, Urbana, Illinois 61801-3028, USA
- Materials Research Laboratory, University of Illinois, 1304 West Green Street, Urbana, Illinois 61801-3028, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois, 1304 West Green Street, Urbana, Illinois 61801-3028, USA
- Department of Chemistry, University of Illinois, 1304 West Green Street, Urbana, Illinois 61801-3028, USA
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9
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Kinoshita M, Hayashi T. Entropic enrichment of cosolvent near a very large solute immersed in solvent-cosolvent binary mixture: Anomalous dependence on bulk cosolvent concentration. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.108] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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10
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Johnson JK, Henderson D, Labík S, Malijevský A. A comparison of the correlation functions of the Lennard–Jones fluid for the first-order Duh–Haymet–Henderson closure with molecular simulations. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1292011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- J. Karl Johnson
- Department of Chemical & Petroleum Engineering, The University of Pittsburgh, Pittsburgh, PA, USA
| | - Douglas Henderson
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, USA
| | - Stanislav Labík
- Department of Physical Chemistry, The University of Chemical Technology, Prague, Czech Republic
| | - Anatol Malijevský
- Department of Physical Chemistry, The University of Chemical Technology, Prague, Czech Republic
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11
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Murakami S, Hayashi T, Kinoshita M. Effects of salt or cosolvent addition on solubility of a hydrophobic solute in water: Relevance to those on thermal stability of a protein. J Chem Phys 2017; 146:055102. [DOI: 10.1063/1.4975165] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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12
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Amokrane S, Tchangnwa Nya F, Ndjaka JM. Glass transition in hard-core fluids and beyond, using an effective static structure in the mode coupling theory. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2017; 40:17. [PMID: 28210959 DOI: 10.1140/epje/i2017-11506-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Accepted: 01/26/2017] [Indexed: 06/06/2023]
Abstract
The dynamical arrest in classical fluids is studied using a simple modification of the mode coupling theory (MCT) aimed at correcting its overestimation of the tendency to glass formation while preserving its overall structure. As in previous attempts, the modification is based on the idea of tempering the static pair correlations used as input. It is implemented in this work by computing the static structure at a different state point than the one used to solve the MCT equation for the intermediate scattering function, using the pure hard-sphere glass for calibration. The location of the glass transition predicted from this modification is found to agree with simulations data for a variety of systems --pure fluids and mixtures with either purely repulsive interaction potentials or ones with attractive contributions. Besides improving the predictions in the long-time limit, and so reducing the non-ergodicity domain, the same modification works as well for the time-dependent correlators.
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Affiliation(s)
- S Amokrane
- Physique des Liquides et Milieux Complexes, Faculté des Sciences et Technologie, Université Paris-Est (Créteil), 61 Av. du Général de Gaulle, 94010, Créteil Cedex, France.
| | - F Tchangnwa Nya
- Physique des Liquides et Milieux Complexes, Faculté des Sciences et Technologie, Université Paris-Est (Créteil), 61 Av. du Général de Gaulle, 94010, Créteil Cedex, France
- Département de Physique, Faculté des Sciences, Université de Maroua, BP 814, Maroua, Cameroon
| | - J M Ndjaka
- Département de Physique, Faculté des Sciences, Université de Yaoundé, I. B.P. 812, Yaoundé, Cameroon
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13
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Amano KI, Iwaki M, Hashimoto K, Fukami K, Nishi N, Takahashi O, Sakka T. Number Density Distribution of Small Particles around a Large Particle: Structural Analysis of a Colloidal Suspension. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:11063-11070. [PMID: 27683951 DOI: 10.1021/acs.langmuir.6b02628] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Some colloidal suspensions contain two types of particles-small and large particles-to improve the lubricating ability, light absorptivity, and so forth. Structural and chemical analyses of such colloidal suspensions are often performed to understand their properties. In a structural analysis study, the observation of the number density distribution of small particles around a large particle (gLS) is difficult because these particles are randomly moving within the colloidal suspension by Brownian motion. We obtain gLS using the data from a line optical tweezer (LOT) that can measure the potential of mean force between two large colloidal particles (ΦLL). We propose a theory that transforms ΦLL into gLS. The transform theory is explained in detail and tested. We demonstrate for the first time that LOT can be used for the structural analysis of a colloidal suspension. LOT combined with the transform theory will facilitate structural analyses of the colloidal suspensions, which is important for both understanding colloidal properties and developing colloidal products.
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Affiliation(s)
- Ken-Ichi Amano
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
| | - Mitsuhiro Iwaki
- Quantitative Biology Center, RIKEN , Suita, Osaka 565-0874, Japan
- Graduate School of Frontier Biosciences, Osaka University , Suita, Osaka 565-0874, Japan
| | - Kota Hashimoto
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
| | - Kazuhiro Fukami
- Department of Materials Science and Engineering, Graduate School of Engineering, Kyoto University , Kyoto 606-8501, Japan
| | - Naoya Nishi
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
| | - Ohgi Takahashi
- Faculty of Pharmaceutical Sciences, Tohoku Medical and Pharmaceutical University , Sendai 981-8558, Japan
| | - Tetsuo Sakka
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University , Kyoto 615-8510, Japan
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14
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Perera-Burgos JA, Méndez-Alcaraz JM, Pérez-Ángel G, Castañeda-Priego R. Assessment of the micro-structure and depletion potentials in two-dimensional binary mixtures of additive hard-disks. J Chem Phys 2016; 145:104905. [DOI: 10.1063/1.4962423] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Affiliation(s)
- Jorge Adrián Perera-Burgos
- División de Ciencias e Ingenierías, University of Guanajuato, Loma del Bosque 103, 37150 León, Mexico
- Facultad de Química, Universidad Autónoma del Carmen, Calle 56 No. 4. Esq. Ave. Condordia, 24180 Ciudad del Carmen, Campeche, Mexico
| | - José Miguel Méndez-Alcaraz
- Departamento de Física, Cinvestav, Ave. IPN 2508, Col. San Pedro Zacatenco, 07360 Ciudad de México, Mexico
| | - Gabriel Pérez-Ángel
- Departamento de Física Aplicada, Cinvestav, Unidad Mérida, Apartado Postal 73 Cordemez, 97310 Mérida, Yucatán, Mexico
| | - Ramón Castañeda-Priego
- División de Ciencias e Ingenierías, University of Guanajuato, Loma del Bosque 103, 37150 León, Mexico
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15
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Amano KI, Liang Y, Miyazawa K, Kobayashi K, Hashimoto K, Fukami K, Nishi N, Sakka T, Onishi H, Fukuma T. Number density distribution of solvent molecules on a substrate: a transform theory for atomic force microscopy. Phys Chem Chem Phys 2016; 18:15534-44. [PMID: 27080590 DOI: 10.1039/c6cp00769d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Atomic force microscopy (AFM) in liquids can measure a force curve between a probe and a buried substrate. The shape of the measured force curve is related to hydration structure on the substrate. However, until now, there has been no practical theory that can transform the force curve into the hydration structure, because treatment of the liquid confined between the probe and the substrate is a difficult problem. Here, we propose a robust and practical transform theory, which can generate the number density distribution of solvent molecules on a substrate from the force curve. As an example, we analyzed a force curve measured by using our high-resolution AFM with a newly fabricated ultrashort cantilever. It is demonstrated that the hydration structure on muscovite mica (001) surface can be reproduced from the force curve by using the transform theory. The transform theory will enhance AFM's ability and support structural analyses of solid/liquid interfaces. By using the transform theory, the effective diameter of a real probe apex is also obtained. This result will be important for designing a model probe of molecular scale simulations.
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Affiliation(s)
- Ken-Ichi Amano
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan.
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16
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Bomont JM, Hansen JP, Pastore G. Hypernetted-chain investigation of the random first-order transition of a Lennard-Jones liquid to an ideal glass. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:042316. [PMID: 26565249 DOI: 10.1103/physreve.92.042316] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2015] [Indexed: 06/05/2023]
Abstract
The structural and thermodynamic behavior of a deeply supercooled Lennard-Jones liquid, and its random first-order transition (RFOT) to an ideal glass is investigated, using a system of two weakly coupled replicas and the hypernetted chain integral equation for the pair structure of this symmetric binary system. A systematic search in the density-temperature plane points to the existence of two glass branches below a density-dependent threshold temperature. The branch of lower free energy exhibits a rapid growth of the structural overlap order parameter upon cooling and may be identified with the ideal glass phase conjectured by several authors for both spin and structural glasses. The RFOT, signaled by a sharp discontinuity of the order parameter, is predicted to be weakly first order from a thermodynamic viewpoint. The transition temperature T(cr) increases rapidly with density and approximately obeys a scaling relation valid for a reference system of particles interacting via a purely repulsive 1/r(18) potential.
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Affiliation(s)
- Jean-Marc Bomont
- Université de Lorraine, LCP-A2MC, EA 3469, 1 Boulevard François Arago, Metz F-57078, France
| | - Jean-Pierre Hansen
- Université Pierre et Marie Curie, UMR 8234 PHENIX, Paris, France
- Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom
| | - Giorgio Pastore
- Università di Trieste, Dipartimento di Fisica, strada Costiera 11, 34151 Grignano (Trieste), Italy
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17
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Ratkova EL, Palmer DS, Fedorov MV. Solvation thermodynamics of organic molecules by the molecular integral equation theory: approaching chemical accuracy. Chem Rev 2015; 115:6312-56. [PMID: 26073187 DOI: 10.1021/cr5000283] [Citation(s) in RCA: 135] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Ekaterina L Ratkova
- †G. A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya Street 1, Ivanovo 153045, Russia.,‡The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig 04103, Germany
| | - David S Palmer
- ‡The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig 04103, Germany.,§Department of Chemistry, University of Strathclyde, Thomas Graham Building, 295 Cathedral Street, Glasgow, Scotland G1 1XL, United Kingdom
| | - Maxim V Fedorov
- ‡The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig 04103, Germany.,∥Department of Physics, Scottish Universities Physics Alliance (SUPA), University of Strathclyde, John Anderson Building, 107 Rottenrow East, Glasgow G4 0NG, United Kingdom
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18
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Misin M, Fedorov MV, Palmer DS. Communication: Accurate hydration free energies at a wide range of temperatures from 3D-RISM. J Chem Phys 2015; 142:091105. [DOI: 10.1063/1.4914315] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- Maksim Misin
- Department of Physics, SUPA, University of Strathclyde, 107 Rottenrow, Glasgow G4 0NG, United Kingdom
| | - Maxim V. Fedorov
- Department of Physics, SUPA, University of Strathclyde, 107 Rottenrow, Glasgow G4 0NG, United Kingdom
| | - David S. Palmer
- Department of Pure and Applied Chemistry, University of Strathclyde, Thomas Graham Building, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
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19
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Liu Y, Wu J. A bridge-functional-based classical mapping method for predicting the correlation functions of uniform electron gases at finite temperature. J Chem Phys 2014; 140:084103. [DOI: 10.1063/1.4865935] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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López-Sánchez E, Estrada-Álvarez CD, Pérez-Ángel G, Méndez-Alcaraz JM, González-Mozuelos P, Castañeda-Priego R. Demixing transition, structure, and depletion forces in binary mixtures of hard-spheres: The role of bridge functions. J Chem Phys 2013; 139:104908. [DOI: 10.1063/1.4820559] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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21
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Xu M, Zhang C, Du Z, Mi J. Structures and Surface Tensions of Fluids near Solid Surfaces: An Integral Equation Theory Study. J Phys Chem B 2012; 116:6514-21. [DOI: 10.1021/jp301991k] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Mengjin Xu
- The Key Laboratory of Carbon
Fiber and Functional Polymers, Ministry of Education, Beijing University of Chemical Technology, Beijing
100029, Peopleʼs Republic of China
| | - Chen Zhang
- The Key Laboratory of Carbon
Fiber and Functional Polymers, Ministry of Education, Beijing University of Chemical Technology, Beijing
100029, Peopleʼs Republic of China
| | - Zhongjie Du
- The Key Laboratory of Carbon
Fiber and Functional Polymers, Ministry of Education, Beijing University of Chemical Technology, Beijing
100029, Peopleʼs Republic of China
| | - Jianguo Mi
- State Key Laboratory of Organic−Inorganic
Composites, Beijing University of Chemical Technology, Beijing 100029, China
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22
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Sen Gupta B, Premkumar L, Das SP. Metastable-state dynamics of a liquid: a free-energy landscape study. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:051501. [PMID: 23004761 DOI: 10.1103/physreve.85.051501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2011] [Indexed: 06/01/2023]
Abstract
Using the time dependence of density fluctuations in a supercooled liquid obtained from the solutions of the equations of nonlinear fluctuating hydrodynamics (NFH), the evolution of the system in the free energy landscape is studied. A crossover from a continuous fluid type dynamics to that of hopping between different free energy minima is observed as the liquid is increasingly supercooled. We demonstrate that our results are also in agreement with equilibrium density functional analysis of the same system. The density field obtained in the numerical solution of the NFH equations are further analyzed to introduce complimentary density of voids in the supercooled liquid state and its static and dynamic correlations are computed. The nature of the relaxation of vacancy correlations are observed to be similar to that of the density fluctuations.
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Affiliation(s)
- Bhaskar Sen Gupta
- School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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Sen Gupta B, Das SP. Time dependent stretching of aging dynamics in a generalized hydrodynamic model for supercooled liquids. J Chem Phys 2012; 136:154506. [PMID: 22519335 DOI: 10.1063/1.4703898] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The nonequilibrium dynamics and aging behavior of a supercooled liquid is investigated from an analysis of the correlation of density fluctuations at two different times. The dynamic correlation functions are computed by solving numerically the equations of nonlinear fluctuating hydrodynamics. The aging time dependence follows a modified stretched exponential form with a relaxation time which is dependent on the aging time. This is similar to the behavior seen in the aging data of dielectric response functions of a typical glass forming liquid.
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Affiliation(s)
- Bhaskar Sen Gupta
- School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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24
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Lee LL. Constructing a new closure theory based on the third-order Ornstein-Zernike equation and a study of the adsorption of simple fluids. J Chem Phys 2011; 135:204706. [DOI: 10.1063/1.3663221] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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25
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A star-function based density functional study of the adsorption of Lennard-Jones fluid near its supercritical states. J Supercrit Fluids 2010. [DOI: 10.1016/j.supflu.2010.09.022] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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26
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Ghaouar N, Belbahri L, Trabelsi S, Aschi A, Gharbi A. Study of Cellulase Enzymes Conformational Changes: Numerical Prediction. J MACROMOL SCI B 2010. [DOI: 10.1080/00222341003609237] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- N. Ghaouar
- a Laboratoire de Physique de la Matière Molle , Faculté des Sciences de Tunis, Campus Universitaire , Tunisia
- b Institut National des Sciences Appliquées et de Technologie , INSAT, Centre Urbain Nord , Tunis, Tunisia
| | - L. Belbahri
- c Agronomy department , School of Engineering of Lullier, University of Applied Sciences of Western Switzerland , Jussy, Switzerland
| | - S. Trabelsi
- a Laboratoire de Physique de la Matière Molle , Faculté des Sciences de Tunis, Campus Universitaire , Tunisia
| | - A. Aschi
- a Laboratoire de Physique de la Matière Molle , Faculté des Sciences de Tunis, Campus Universitaire , Tunisia
| | - A. Gharbi
- a Laboratoire de Physique de la Matière Molle , Faculté des Sciences de Tunis, Campus Universitaire , Tunisia
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Ratkova EL, Chuev GN, Sergiievskyi VP, Fedorov MV. An Accurate Prediction of Hydration Free Energies by Combination of Molecular Integral Equations Theory with Structural Descriptors. J Phys Chem B 2010; 114:12068-79. [DOI: 10.1021/jp103955r] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Ekaterina L. Ratkova
- The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig, 04103, Germany, and Institute of Theoretical and Experimental Biophysics, Russian Academy of Science, Pushchino, Moscow Region, 142290, Russia
| | - Gennady N. Chuev
- The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig, 04103, Germany, and Institute of Theoretical and Experimental Biophysics, Russian Academy of Science, Pushchino, Moscow Region, 142290, Russia
| | - Volodymyr P. Sergiievskyi
- The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig, 04103, Germany, and Institute of Theoretical and Experimental Biophysics, Russian Academy of Science, Pushchino, Moscow Region, 142290, Russia
| | - Maxim V. Fedorov
- The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig, 04103, Germany, and Institute of Theoretical and Experimental Biophysics, Russian Academy of Science, Pushchino, Moscow Region, 142290, Russia
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28
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Kast SM, Kloss T. Closed-form expressions of the chemical potential for integral equation closures with certain bridge functions. J Chem Phys 2008; 129:236101. [DOI: 10.1063/1.3041709] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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29
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Recent Advances in the Field of Integral Equation Theories: Bridge Functions and Applications to Classical Fluids. ADVANCES IN CHEMICAL PHYSICS 2008. [DOI: 10.1002/9780470259498.ch1] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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30
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Woelki S, Kohler HH, Krienke H. A Singlet Reference Interation Site Model Theory for Solid/Liquid Interfaces Part II: Electrical Double Layers. J Phys Chem B 2008; 112:3365-74. [DOI: 10.1021/jp077485z] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Stefan Woelki
- Institute of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany, and Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93040 Regensburg, Germany
| | - Hans-Helmut Kohler
- Institute of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany, and Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93040 Regensburg, Germany
| | - Hartmut Krienke
- Institute of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany, and Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93040 Regensburg, Germany
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31
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Freedman H, Le L, Tuszynski JA, Truong TN. Improving the Performance of the Coupled Reference Interaction Site Model−Hyper-netted Chain (RISM−HNC)/Simulation Method for Free Energy of Solvation. J Phys Chem B 2008; 112:2340-8. [DOI: 10.1021/jp077179l] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Holly Freedman
- Department of Oncology, University of Alberta, Cross Cancer Institute, 11560 University Avenue, Edmonton, AB, Canada, AB T6G 1Z2, Department of Physics, University of Alberta, 11322-89 Avenue, Edmonton, AB, Canada, AB T6G 2G7, and Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112
| | - Ly Le
- Department of Oncology, University of Alberta, Cross Cancer Institute, 11560 University Avenue, Edmonton, AB, Canada, AB T6G 1Z2, Department of Physics, University of Alberta, 11322-89 Avenue, Edmonton, AB, Canada, AB T6G 2G7, and Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112
| | - Jack A. Tuszynski
- Department of Oncology, University of Alberta, Cross Cancer Institute, 11560 University Avenue, Edmonton, AB, Canada, AB T6G 1Z2, Department of Physics, University of Alberta, 11322-89 Avenue, Edmonton, AB, Canada, AB T6G 2G7, and Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112
| | - Thanh N. Truong
- Department of Oncology, University of Alberta, Cross Cancer Institute, 11560 University Avenue, Edmonton, AB, Canada, AB T6G 1Z2, Department of Physics, University of Alberta, 11322-89 Avenue, Edmonton, AB, Canada, AB T6G 2G7, and Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112
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32
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Woelki S, Kohler HH, Krienke H. A Singlet-RISM Theory for Solid/Liquid Interfaces Part I: Uncharged Walls. J Phys Chem B 2007; 111:13386-97. [DOI: 10.1021/jp068998t] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Stefan Woelki
- Institute of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany, and Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93040 Regensburg, Germany
| | - Hans-Helmut Kohler
- Institute of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany, and Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93040 Regensburg, Germany
| | - Hartmut Krienke
- Institute of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany, and Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93040 Regensburg, Germany
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33
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Apfelbaum EM, Vorob'ev VS, Martynov GA. Regarding convergence curve of virial expansion for the Lennard-Jones system. J Chem Phys 2007; 127:064507. [PMID: 17705612 DOI: 10.1063/1.2754272] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We calculate the convergence curve of the virial expansion for a Lennard-Jones system in the density-temperature plane using the approximate method based on the density expansion of the Ornstein-Zernike equation and the condition of thermodynamic consistency [J. Chem. Phys. 106, 6095 (1997)]. At subcritical temperatures, this curve is close to the binodal. At supercritical temperatures, the curve does not coincide with the freezing curve. In the latter case, the densities along the convergence line are distinctly smaller than the densities corresponding to the condensed state.
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Affiliation(s)
- E M Apfelbaum
- Joint Institute for High Temperatures, RAS, Izhorskay 13/19, 125412 Moscow, Russia
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34
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Singh SP, Das SP. Characteristic temperatures of glassy behaviour in a simple liquid. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2007; 19:246107. [PMID: 21694043 DOI: 10.1088/0953-8984/19/24/246107] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
A model for the metastable liquid in terms of holes present in the amorphous structure is considered using the classical density functional theory (DFT). For a one component Lennard-Jones liquid we obtain the temperature dependence of the free volume v(f) in the metastable state. A temperature T(0), similar to that of the characteristic transition of the free volume theory, is identified by extrapolating v(f)(T) to zero. The Kauzmann temperature T(K) is also obtained here by extrapolating the entropy difference between the supercooled state and that of the crystal to zero. We compare the temperatures T(0) and T(K) obtained in our model with other two characteristic temperatures for glassy behaviour, namely (a) the dynamic transition temperature T(c) of the mode coupling theory (MCT) and (b) the glass transition temperature T(g) which was obtained by Leonardo et al (2000 Phys. Rev. Lett. 84 6054) from studying the violation of the fluctuation-dissipation theorem. All the four temperatures, obtained from independent routes, are located with respect to the melting temperature T(m) in a manner which is in agreement with experiments.
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Affiliation(s)
- Sunil P Singh
- School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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35
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Bomont JM, Bretonnet JL. Approximative "one particle" bridge function B(1)(r) for the theory of simple fluids. J Chem Phys 2007; 126:214504. [PMID: 17567205 DOI: 10.1063/1.2737046] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
New properties for the one particle bridge function B(1)(r), which are necessary to the calculation of the excess chemical potential betamue), are derived for the hard sphere fluid. The method, which only requires the knowledge of the bridge function B(2)(r), is based on an investigation of the correlation function dependence on the Kirkwood charging parameter. In this framework, the unavoidable question of topological homotopy is addressed. As far as B(2)(r) is considered as exact, this work provides useful information on B(1)(r) in the well identified dynamical regimes of the hard sphere fluid. Signatures of the transitions between these regimes are identified on the trends of B(1)(r). This approach provides self-consistent results for betamue) that agree very well with simulation data.
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Affiliation(s)
- Jean-Marc Bomont
- Laboratoire de Physique des Milieux Denses, Université Paul Verlaine, 1, Boulevard F. D. Arago, 57078 Metz Cedex 3, France.
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Ali SM, Samanta A, Choudhury N, Ghosh SK. Mass dependence of shear viscosity in a binary fluid mixture: mode-coupling theory. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:051201. [PMID: 17279895 DOI: 10.1103/physreve.74.051201] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2006] [Revised: 07/28/2006] [Indexed: 05/13/2023]
Abstract
An expression for the shear viscosity of a binary fluid mixture is derived using mode-coupling theory in order to study the mass dependence. The calculated results on shear viscosity for a binary isotopic Lennard-Jones fluid mixture show good agreement with results from molecular dynamics simulation carried out over a wide range of mass ratio at different composition. Also proposed is a new generalized Stokes-Einstein relation connecting the individual diffusivities to shear viscosity.
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Affiliation(s)
- Sk Musharaf Ali
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
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38
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Apfelbaum EM, Vorob’yov VS, Martynov GA. Universal triangle of states for liquid and vapor. J STRUCT CHEM+ 2006. [DOI: 10.1007/s10947-006-0385-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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39
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A stretched exponential model of collective dynamic structure factor in simple dense fluids. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.07.079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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40
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Roth R, Kinoshita M. Depletion potential between large spheres immersed in a multicomponent mixture of small spheres. J Chem Phys 2006; 125:084910. [PMID: 16965060 DOI: 10.1063/1.2345200] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
We analyze the depletion potential between large spheres in a multicomponent mixture of dense small spheres (up to seven components) using the integral equation theory (IET), in which semiempirical bridge functions are incorporated, and the insertion approach within the framework of density functional theory (DFT). The diameters of the small spheres considered are in the range of d(S)-5d(S). The results from the IET and DFT are in close agreement with each other. The depletion potential in the mixture is substantially different from that in a one-component system of dense small spheres with diameter d(S). In comparison with the latter, the former possesses in general a less pronounced oscillatory structure, and the free-energy barrier for large spheres to overcome before reaching the contact is significantly reduced. This tendency can be enhanced as the number of components increases. In a several-component mixture of small spheres whose diameters are suitably chosen and in which the packing fractions of the components share the same value, the depletion potential is essentially short ranged and attractive and possesses a sufficiently large, negative value at the contact.
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Affiliation(s)
- Roland Roth
- Max-Planck-Institut für Metallforschung, Heisenbergstrasse 3, D-70569 Stuttgart, Germany
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41
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Kunor TR, Taraphder S. Bridge functions near the liquid-vapor coexistence curve in binary Lennard-Jones mixtures. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:011201. [PMID: 16907081 DOI: 10.1103/physreve.74.011201] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2005] [Revised: 05/31/2006] [Indexed: 05/11/2023]
Abstract
We have carried out extensive molecular-dynamics simulation studies of binary Lennard-Jones mixtures to calculate directly the bridge function at state points lying in a very narrow single fluid phase region between the vapor-liquid and solid-liquid coexistence lines [Lamm and Hall, Fluid Phase Equilib. 182, 37 (2001); 194-197, 197 (2002)]. By varying the density close to the liquid-vapor coexistence line, significant deviations are observed at intermediate distances between the simulated bridge function and two widely used approximate closures in the integral equation theory of liquids, viz. the hybrid mean spherical approximation and the Duh-Henderson closures. The overall qualitative agreement remains the same with small variation in temperature that brings the system closer to either the liquid-vapor or liquid-solid coexistence curve. We also report a comparison of the direct and indirect correlation functions obtained from our simulation studies as well as from the integral equation theory of liquids. Our results emphasize the need for developing new closures applicable to binary fluid mixtures over a wide range of thermodynamic parameters.
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Affiliation(s)
- Tapas R Kunor
- Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India.
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42
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Ali SM. Scaling law of shear viscosity in atomic liquid and liquid mixtures. J Chem Phys 2006; 124:144504. [PMID: 16626211 DOI: 10.1063/1.2186322] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A scaling law relating the shear viscosity of one and two component liquid mixtures to their excess thermodynamic entropies defined through pair correlation functions is derived by approximating the mode coupling theory expressions of frictions and then combining with the Stokes-Einstein relation. Molecular dynamics simulation has been performed to generate the data of shear viscosity for one and two component liquid mixtures to test the derived scaling law. The derived scaling laws yield numerical results of shear viscosity for one component and two component liquid mixtures, which are in excellent agreement with the molecular dynamics simulation results for a wide range of density and interaction potential.
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Affiliation(s)
- Sk Musharaf Ali
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai 400 085, India.
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Abstract
We demonstrate for the first time that (a) the straight line of the unit compressibility factor (Zeno line) tends asymptotically to the liquid branch of binodal at low temperatures, (b) the straight line with a half density has to be close to the average of vapor-liquid densities along the binodal curve (rectilinear diameter), and (c) the phase coexistence curves are inscribed into the right triangle in the density-temperature plane, which is formed by the Zeno line and by the segments which this line cuts off on the axes. These statements are confirmed for model systems and for a wide group of real substances (for the first time including metals: Hg, Cs, and Cu). Critical parameters of all substances under study are located in the vicinity of the triangle median, drawn to the density axis, with a dispersion on the order of 2 in reduced units.
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Affiliation(s)
- E M Apfelbaum
- Institute for High Energy Densities of RAS, Izhorskay 13/19, 125412 Moscow, Russia
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Kunor TR, Taraphder S. Molecular dynamics study of the density and temperature dependence of bridge functions in normal and supercritical Lennard-Jones fluids. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 72:031201. [PMID: 16241418 DOI: 10.1103/physreve.72.031201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2005] [Revised: 07/12/2005] [Indexed: 05/05/2023]
Abstract
A systematic study of the density and temperature dependence of bridge functions has been carried out using molecular dynamics simulation studies in one-component Lennard-Jones fluids. In deriving the liquid structure, approximate closures are generally used in integral equation theories of liquids to obtain static density correlations. In the present work, we have directly compared the simulated bridge function to two such commonly used closures, viz., hybrid mean spherical approximation (HMSA) [J. Chem. Phys. 84, 2336 (1986)] and Duh-Henderson [J. Chem. Phys. 104, 6742 (1996)] closures with thermodynamic parameters varying from the normal liquid to the supercritical fluid phase far from and near the critical point. In the normal liquid region, both closures show a qualitative agreement with the simulated bridge function, although the extent of correlation at distances sigma < r < or = 2.5sigma is generally underestimated. A similar behavior is obtained in supercritical fluids far from the critical point where critical fluctuations are no longer important. In contrast, significant deviations are observed in the bridge functions in supercritical fluids near the critical point even at densities as small as 25% or 50% of the critical density. Such behavior appears to have resulted from competing contributions to the bridge function from decreasing indirect correlations and small yet significant cavity correlations persistent even at very low densities.
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Affiliation(s)
- Tapas R Kunor
- Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India.
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46
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Wilson DS, Lee LL. Chemical potentials and phase equilibria of Lennard-Jones mixtures: a self-consistent integral equation approach. J Chem Phys 2005; 123:044512. [PMID: 16095374 DOI: 10.1063/1.1961399] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We explore the vapor-liquid phase behavior of binary mixtures of Lennard-Jones-type molecules where one component is supercritical, given the system temperature. We apply the self-consistency approach to the Ornstein-Zernike integral equations to obtain the correlation functions. The consistency checks include not only thermodynamic consistencies (pressure consistency and Gibbs-Duhem consistency), but also pointwise consistencies, such as the zero-separation theorems on the cavity functions. The consistencies are enforced via the bridge functions in the closure which contain adjustable parameters. The full solution requires the values of not only the monomer chemical potentials, but also the dimer chemical potentials present in the zero-separation theorems. These are evaluated by the direct chemical-potential formula [L. L. Lee, J. Chem. Phys. 97, 8606 (1992)] that does not require temperature nor density integration. In order to assess the integral equation accuracy, molecular-dynamics simulations are carried out alongside the states studied. The integral equation results compare well with simulation data. In phase calculations, it is important to have pressure consistency and valid chemical potentials, since the matching of phase boundaries requires the equality of the pressures and chemical potentials of both the liquid and vapor phases. The mixtures studied are methane-type and pentane-type molecules, both characterized by effective Lennard-Jones potentials. Calculations on one isotherm show that the integral equation approach yields valid answers as compared with the experimental data of Sage and Lacey. To study vapor-liquid phase behavior, it is necessary to use consistent theories; any inconsistencies, especially in pressure, will vitiate the phase boundary calculations.
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Affiliation(s)
- D Scott Wilson
- School of Chemical, Biological, and Materials Engineering, University of Oklahoma, Norman, Oklahoma 73072, USA
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47
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Kaur C, Harbola U, Das SP. Nature of the entropy versus self-diffusivity plot for simple liquids. J Chem Phys 2005; 123:34501. [PMID: 16080738 DOI: 10.1063/1.1942488] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The empirical relation (D(*))(alpha) = a exp[S] between the self-diffusion coefficient D(*) and the excess entropy S of a liquid is studied here in the context of theoretical model calculation. The coefficient alpha is dependent on the interaction potential and shows a crossover at an intermediate density, where cooperative dynamics become more important. Around this density a departure from the Stokes-Einstein relation is also observed. The above relation between entropy and diffusion is also tested for the scaled total diffusion coefficient in a binary mixture.
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Affiliation(s)
- Charanbir Kaur
- School of Physical Sciences, Jawaharlal Nehru University, New Delhi, India
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Sarkisov G, Lomba E. The gas–liquid phase-transition singularities in the framework of the liquid-state integral equation formalism. J Chem Phys 2005; 122:214504. [PMID: 15974751 DOI: 10.1063/1.1925269] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The singularities of various liquid-state integral equations derived from the Ornstein-Zernike relation and its temperature derivatives, have been investigated in the liquid-vapor transition region. As a general feature, it has been found that the existence of a nonsolution curve on the vapor side of the phase diagram, on which both the direct and the total correlation functions become complex-with a finite isothermal compressibility-also corresponds to the locus of points where the constant-volume heat capacity diverges, in consonance with a divergence of the temperature derivative of the correlation functions. In contrast, on the liquid side of the phase diagram one finds that a true spinodal (a curve of diverging isothermal compressibilities) is reproduced by the Percus-Yevick and Martynov-Sarkisov integral equations, but now this curve corresponds to states with finite heat capacity. On the other hand, the hypernetted chain approximation exhibits a nonsolution curve with finite compressibilities and heat capacities in which, as temperature is lowered, the former tends to diverge.
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Affiliation(s)
- Gari Sarkisov
- Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia
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49
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Pastore G, Santin R, Taraphder S, Colonna F. Fluid-phase diagrams of binary mixtures from constant pressure integral equations. J Chem Phys 2005; 122:181104. [PMID: 15918685 DOI: 10.1063/1.1915347] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A new algorithm for solving integral equations of the theory of liquids at fixed pressure is introduced. Combining this technique with the Lee's star function approximation for the chemical potentials, we obtain an efficient method to investigate fluid-phase diagrams of binary mixtures. We have tested the capabilities of such technique to study symmetric and asymmetric phase diagrams in nonadditive hard spheres and Lennard-Jones mixtures. We find that the integral equation theories, although approximate, can provide a flexible tool to determine the fluid-phase diagrams whose accuracy is critically dependent on the quality of the closure and of the resulting chemical potentials.
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Affiliation(s)
- G Pastore
- Dipartimento di Fisica Teorica, Università di Trieste, Strada Costiera 11, I-34100 Trieste, Italy.
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Kinoshita M. Density and orientational structure of water around a hydrophobic solute: effects due to the solute size. J Mol Liq 2005. [DOI: 10.1016/j.molliq.2004.10.007] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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