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Westermayr J, Marquetand P. Machine Learning for Electronically Excited States of Molecules. Chem Rev 2021; 121:9873-9926. [PMID: 33211478 PMCID: PMC8391943 DOI: 10.1021/acs.chemrev.0c00749] [Citation(s) in RCA: 174] [Impact Index Per Article: 58.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Indexed: 12/11/2022]
Abstract
Electronically excited states of molecules are at the heart of photochemistry, photophysics, as well as photobiology and also play a role in material science. Their theoretical description requires highly accurate quantum chemical calculations, which are computationally expensive. In this review, we focus on not only how machine learning is employed to speed up such excited-state simulations but also how this branch of artificial intelligence can be used to advance this exciting research field in all its aspects. Discussed applications of machine learning for excited states include excited-state dynamics simulations, static calculations of absorption spectra, as well as many others. In order to put these studies into context, we discuss the promises and pitfalls of the involved machine learning techniques. Since the latter are mostly based on quantum chemistry calculations, we also provide a short introduction into excited-state electronic structure methods and approaches for nonadiabatic dynamics simulations and describe tricks and problems when using them in machine learning for excited states of molecules.
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Affiliation(s)
- Julia Westermayr
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
| | - Philipp Marquetand
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Vienna
Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Data
Science @ Uni Vienna, University of Vienna, Währinger Strasse 29, 1090 Vienna, Austria
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Abstract
Electronically excited states of molecules are at the heart of photochemistry, photophysics, as well as photobiology and also play a role in material science. Their theoretical description requires highly accurate quantum chemical calculations, which are computationally expensive. In this review, we focus on not only how machine learning is employed to speed up such excited-state simulations but also how this branch of artificial intelligence can be used to advance this exciting research field in all its aspects. Discussed applications of machine learning for excited states include excited-state dynamics simulations, static calculations of absorption spectra, as well as many others. In order to put these studies into context, we discuss the promises and pitfalls of the involved machine learning techniques. Since the latter are mostly based on quantum chemistry calculations, we also provide a short introduction into excited-state electronic structure methods and approaches for nonadiabatic dynamics simulations and describe tricks and problems when using them in machine learning for excited states of molecules.
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Affiliation(s)
- Julia Westermayr
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
| | - Philipp Marquetand
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Vienna Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währinger Strasse 17, 1090 Vienna, Austria
- Data Science @ Uni Vienna, University of Vienna, Währinger Strasse 29, 1090 Vienna, Austria
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Lee H, Kim SK. Vibration mediated photodissociation dynamics of CH 3SH: manipulation of the dynamic energy disposal into products. Phys Chem Chem Phys 2020; 22:19713-19717. [PMID: 32840271 DOI: 10.1039/d0cp03575k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The S-H bond dissociation dynamics of CH3SH have been investigated for the S1-S0 transition mediated by either the S-H stretching (2608 cm-1) or CH3 symmetric stretching (2951 cm-1) mode excitation in the S0 state. The S-H and C-S bond extensions are strongly coupled in the S1 state through the S1/S2 same-symmetry conical intersection, giving the C-S stretching mode excitation of the CH3S˙ fragment during the prompt S-H bond rupture on S1. In the IR + UV transition mediated by the S-H stretching mode, the vertical transition seems to access the Franck-Condon region where the S-H bond is shortened while the coupling to the C-S bond stretching becomes stronger compared to the case of one-photon UV transition, indicating that the intramolecular vibrational redistribution (IVR) is little activated in S0. When the IR + UV excitation is mediated by the CH3 symmetric stretching mode, on the other hand, the Franck-Condon region in S1 encompasses the enlarged molecular structures with respect to both S-H and C-S bond extensions, presumably due to the rapid IVR in S0 prior to the vertical transition. This leads to the inverted vibrational state population of the C-S bond stretching mode of the CH3S˙ fragment. This work demonstrates that the reaction dynamics upon the IR + UV excitation of CH3SH is highly mode dependent and the energy disposal dynamics could be controlled by the manipulation of the Franck-Condon region through the particular vibrational-state mediation in the ground state, shedding new light on the structure-dynamics relationship.
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Affiliation(s)
- Heesung Lee
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea.
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea.
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Improved potential energy surfaces of thioanisole and the effect of upper surface variations on the product distribution upon photodissociation. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.06.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Mukherjee B, Mukherjee S, Sardar S, Shamasundar KR, Adhikari S. An ab initio investigation of non-adiabatic couplings and conical intersections among the lowest five electronic states of the NO3 radical. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1340680] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Bijit Mukherjee
- Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India
| | - Saikat Mukherjee
- Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India
| | - Subhankar Sardar
- Department of Chemistry, Bhatter College, Paschim Midnapore, India
| | - K. R. Shamasundar
- Department of Chemical Sciences, Indian Institute of Science Education and Research, Mohali, India
| | - Satrajit Adhikari
- Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India
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Svrčková P, Pysanenko A, Lengyel J, Rubovič P, Kočišek J, Poterya V, Slavíček P, Fárník M. Photodissociation dynamics of ethanethiol in clusters: complementary information from velocity map imaging, mass spectrometry and calculations. Phys Chem Chem Phys 2015; 17:25734-41. [DOI: 10.1039/c5cp00367a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate the solvent effects on photodissociation dynamics of the S–H bond in ethanethiol CH3CH2SH (EtSH).
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Affiliation(s)
- Pavla Svrčková
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
- Department of Physical Chemistry
| | - Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Jozef Lengyel
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
- Department of Physical Chemistry
| | - Peter Rubovič
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Jaroslav Kočišek
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Viktoriya Poterya
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Petr Slavíček
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
- Department of Physical Chemistry
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry v.v.i
- The Czech Academy of Sciences
- 18223 Prague
- Czech Republic
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Chen Z, Shuai Q, Eppink ATJB, Jiang B, Dai D, Yang X, Parker DH. Imaging CH3SH photodissociation at 204 nm: the SH + CH3 channel. Phys Chem Chem Phys 2011; 13:8531-6. [PMID: 21451858 DOI: 10.1039/c1cp00032b] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The SH + CH(3) product channel for the photodissociation of CH(3)SH at 204 nm was investigated using the sliced velocity map ion imaging technique with the detection of CH(3) products using state selective (2+1) resonance enhanced multiphoton ionization (REMPI). Images were measured for CH(3) formed in the ground and excited vibrational states (v(2) = 0, 1, and 2) of the umbrella mode from which the correlated SH vibrational state distributions were determined. The vibrational distribution of the SH fragment in the SH + CH(3) channel at 204 nm is clearly inverted and peaks at v = 1. The highly negative anisotropy parameter of the CH(3) (v(2) = 0, 1, and 2) products is indicative of a fast dissociation process for C-S bond cleavage. Two kinds of slower CH(3) products were also observed (one of which was partly vibrationally resolved) that are assigned to a two-step photodissociation processes, in which the first step is the production of the CH(3)S (X(2)E) radical via cleavage of the S-H bond in CH(3)SH, followed by probe laser photodissociation of nascent CH(3)S radicals yielding CH(3)(X(2)A(1), v(2) = 0-2) + S((3)P(j)/(1)D) products.
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Affiliation(s)
- Zhichao Chen
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Liaoning, Dalian 116023, China
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Tishchenko O, Truhlar DG, Ceulemans A, Nguyen MT. A Unified Perspective on the Hydrogen Atom Transfer and Proton-Coupled Electron Transfer Mechanisms in Terms of Topographic Features of the Ground and Excited Potential Energy Surfaces As Exemplified by the Reaction between Phenol and Radicals. J Am Chem Soc 2008; 130:7000-10. [DOI: 10.1021/ja7102907] [Citation(s) in RCA: 127] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Oksana Tishchenko
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, and Department of Chemistry and Mathematical Modelling and Computational Science Center, University of Leuven, B-3001 Leuven, Belgium
| | - Donald G. Truhlar
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, and Department of Chemistry and Mathematical Modelling and Computational Science Center, University of Leuven, B-3001 Leuven, Belgium
| | - Arnout Ceulemans
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, and Department of Chemistry and Mathematical Modelling and Computational Science Center, University of Leuven, B-3001 Leuven, Belgium
| | - Minh Tho Nguyen
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, and Department of Chemistry and Mathematical Modelling and Computational Science Center, University of Leuven, B-3001 Leuven, Belgium
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Izquierdo JG, Amaral GA, Ausfelder F, Aoiz FJ, Bañares L. Velocity map imaging study of the photodissociation of CH3SH: internal energy distribution of the SH fragment. Chemphyschem 2007; 7:1682-6. [PMID: 16810660 DOI: 10.1002/cphc.200600232] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Jesús G Izquierdo
- Departamento de Química Física I. Facultad de Química, Universidad Complutense de Madrid, 28040 Madrid, Spain
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Amaral GA, Ausfelder F, Izquierdo JG, Rubio-Lago L, Bañares L. Imaging the photodissociation of CH3SH in the first and second absorption bands: The CH3(X̃A12)+SH(XΠ2) channel. J Chem Phys 2007; 126:024301. [PMID: 17228948 DOI: 10.1063/1.2409925] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
The CH3(X2A1)+SH(X2Pi) channel of the photodissociation of CH3SH has been investigated at several wavelengths in the first 1 1A"<--X 1A' and second 2 1A"<--X1A' absorption bands by means of velocity map imaging of the CH3 fragment. A fast highly anisotropic (beta=-1+/-0.1) CH3(X2A1) signal has been observed in the images at all the photolysis wavelengths studied, which is consistent with a direct dissociation process from an electronically excited state by cleavage of the C-S bond in the parent molecule. From the analysis of the CH3 images, vibrational populations of the SH(X2Pi) counterfragment have been extracted. In the second absorption band, the SH fragment is formed with an inverted vibrational distribution as a consequence of the forces acting in the crossing from the bound 2 1A" second excited state to the unbound 1 1A" first excited state. The internal energy of the SH radical increases as the photolysis wavelength decreases. In the case of photodissociation via the first excited state, the direct production of CH3 leaves the SH counterfragment with little internal excitation. Moreover, at the longer photolysis wavelengths corresponding to excitation to the 1 1A" state, a slower anisotropic CH3 channel has been observed (beta=-0.8+/-0.1) consistent with a two step photodissociation process, where the first step corresponds to the production of CH3S(X2E) radicals via cleavage of the S-H bond in CH3SH, followed by photodissociation of the nascent CH3S radicals yielding CH3(X2A1)+S(X3P0,1,2).
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Affiliation(s)
- G A Amaral
- Departamento de Quimica Fisica I, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, 28040 Madrid, Spain
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Brue DA, Li X, Parker GA. Conical intersection between the lowest spin-aligned Li3(A′4) potential-energy surfaces. J Chem Phys 2005; 123:91101. [PMID: 16164333 DOI: 10.1063/1.2031187] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We have calculated new potential-energy surfaces for the lowest two spin-aligned (4)A(') states of the Li(3) trimer. This calculation shows a seam of conical intersections between these states resulting from the extra symmetry of the system when the atoms are in a collinear arrangement. This seam is especially important because of its proximity to the three-body dissociation limit of the system; ultracold scattering calculations and the bound-state energies of the system will be affected by the presence of this conical intersection. In this paper we discuss the calculation of the potential-energy surface and the location of the conical intersection seam.
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Affiliation(s)
- Daniel A Brue
- Department of Physics and Astronomy, University of Oklahoma, Norman, Oklahoma 73019, USA.
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Martı́nez-Haya B, Quintana P, Bañares L, Samartzis P, Smith DJ, Kitsopoulos TN. The photodissociation of CH[sub 3]SCH[sub 3] and CD[sub 3]SCD[sub 3] at 220–231 nm investigated by velocity map ion imaging. J Chem Phys 2001. [DOI: 10.1063/1.1346644] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
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Ferretti A, Lami A, Villani G. Quantum dynamics at a conical intersection: The role of the variation of oscillator frequencies in the diabatic transition. J Chem Phys 1998. [DOI: 10.1063/1.477570] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
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Affiliation(s)
- David R. Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218
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Ben-Nun M, Martı́nez TJ. Nonadiabatic molecular dynamics: Validation of the multiple spawning method for a multidimensional problem. J Chem Phys 1998. [DOI: 10.1063/1.476142] [Citation(s) in RCA: 327] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
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Yarkony DR. On the consequences of nonremovable derivative couplings. I. The geometric phase and quasidiabatic states: A numerical study. J Chem Phys 1996. [DOI: 10.1063/1.472972] [Citation(s) in RCA: 106] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
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Affiliation(s)
- David R. Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218
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