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Xiang H, Tian L, Li Y, Song H. Energy- and Local-Gradient-Based Neural Network Method for Accurately Describing Long-Range Interaction: Application to the H 2 + CO + Reaction. J Phys Chem A 2022; 126:352-363. [PMID: 34989591 DOI: 10.1021/acs.jpca.1c09719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The long-range interaction plays an important role in theoretically describing ion-molecule reaction. However, most energy-based neural network fitting methods usually introduce spurious long-range interactions. In this work, we propose an energy- and local-gradient-based neural network (ELGNN) method to fit potential energy surfaces (PESs). K-means clustering is employed to divide the whole configuration space into three regions: reactant asymptotic region, interaction region, and product asymptotic region. In the interaction region, only the energies of sampled points are computed, while in the asymptotic regions, the gradients of partially sampled configurations are calculated as well, and both the energies and energy gradients (if necessary) are used to fit long-range interactions. These regions are joined together by switching functions. The ELGNN method is first applied to fit the PES of the H2 + CO+ reaction, which has significant long-range interactions. It is found that the ELGNN method works better than the energy-based NN method in describing long-range interactions. The dynamics and kinetics of the reaction are then investigated on the new PES.
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Affiliation(s)
- Haipan Xiang
- College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China.,State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Li Tian
- College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China.,State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Yong Li
- College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
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Doménech JL, Asvany O, Markus CR, Schlemmer S, Thorwirth S. High-resolution infrared action spectroscopy of the fundamental vibrational band of CN . JOURNAL OF MOLECULAR SPECTROSCOPY 2020; 374:111375. [PMID: 33162609 PMCID: PMC7116308 DOI: 10.1016/j.jms.2020.111375] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Rotational-vibrational transitions of the fundamental vibrational modes of the 12C14N+ and 12C15N+ cations have been observed for the first time using a cryogenic ion trap apparatus with an action spectroscopy scheme. The lines P(3) to R(3) of 12C14N+ and R(1) to R(3) of 12C15N+ have been measured, limited by the trap temperature of approximately 4 K and the restricted tuning range of the infrared laser. Spectroscopic parameters are presented for both isotopologues, with band origins at 2000.7587(1) and 1970.321(1) cm-1, respectively, as well as an isotope independent fit combining the new and the literature data.
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Affiliation(s)
- José L. Doménech
- Instituto de Estructura de la Materia (IEM-CSIC), Serrano 123, E28006 Madrid, Spain
| | - Oskar Asvany
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, D50937 Köln, Germany
| | - Charles R. Markus
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, D50937 Köln, Germany
- Department of Chemistry, University of Illinois, Urbana, IL 61801, USA
| | - Stephan Schlemmer
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, D50937 Köln, Germany
| | - Sven Thorwirth
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, D50937 Köln, Germany
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3
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Satta M, Cartoni A, Catone D, Castrovilli MC, Bolognesi P, Zema N, Avaldi L. The Reaction of Sulfur Dioxide Radical Cation with Hydrogen and its Relevance in Solar Geoengineering Models. Chemphyschem 2020; 21:1146-1156. [PMID: 32203633 DOI: 10.1002/cphc.202000194] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 03/23/2020] [Indexed: 11/06/2022]
Abstract
SO2 has been proposed in solar geoengineering as a precursor of H2 SO4 aerosol, a cooling agent active in the stratosphere to contrast climate change. Atmospheric ionization sources can ionize SO2 into excited states of S O 2 · + , which quickly reacts with trace gases in the stratosphere. In this work we explore the reaction of H 2 D 2 with S O 2 · + excited by tunable synchrotron radiation, leading to H S O 2 + + H ( D S O 2 + + D ), where H contributes to O3 depletion and OH formation. Density Functional Theory and Variational Transition State Theory have been used to investigate the dynamics of the title barrierless and exothermic reaction. The present results suggest that solar geoengineering models should test the reactivity of S O 2 · + with major trace gases in the stratosphere, such as H2 since this is a relevant channel for the OH formation during the nighttime when there is not OH production by sunlight. OH oxides SO2 , triggering the chemical reactions leading to H2 SO4 aerosol.
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Affiliation(s)
- Mauro Satta
- ISMN (CNR) c/o Dipartimento di Chimica Sapienza Universita' di Roma, Pl.e Aldo Moro 5, Roma, Italy
| | - Antonella Cartoni
- Dipartimento di Chimica, Sapienza Universitá di Roma, Pl.e Aldo Moro 5, Roma, Italy
| | - Daniele Catone
- CNR-ISM, Area della Ricerca di Tor Vergata, Via del Fosso del Cavaliere, Roma, Italy
| | | | - Paola Bolognesi
- CNR-ISM, Area della Ricerca di Roma 1, Via Salaria Km 29,300, Monterotondo Scalo (RM), Italy
| | - Nicola Zema
- CNR-ISM, Area della Ricerca di Tor Vergata, Via del Fosso del Cavaliere, Roma, Italy
| | - Lorenzo Avaldi
- CNR-ISM, Area della Ricerca di Roma 1, Via Salaria Km 29,300, Monterotondo Scalo (RM), Italy
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Gans B, Garcia GA, Boyé-Péronne S, Pratt ST, Guillemin JC, Aguado A, Roncero O, Loison JC. Origin band of the first photoionizing transition of hydrogen isocyanide. Phys Chem Chem Phys 2019; 21:2337-2344. [PMID: 30656348 PMCID: PMC6469576 DOI: 10.1039/c8cp07737a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The photoelectron spectrum of the X1Σ+ → X+2Σ+ ionizing transition of hydrogen isocyanide (HNC) is measured for the first time at a fixed photon energy (13 eV). The assignment of the spectrum is supported by wave-packet calculations simulating the photoionization transition spectrum and using ab initio calculations of the potential energy surfaces for the three lowest electronic states of the cation. The photoelectron spectrum allows the retrieval of the fundamental of the CN stretching mode of the cationic ground state ([small nu, Greek, tilde]3 = 2260 ± 80 cm-1) and the adiabatic ionization energy of hydrogen isocyanide: IE(HNC) = 12.011 ± 0.010 eV, which is far below that of HCN (IE(HCN) = 13.607 eV). In light of this latter result, the thermodynamics of the HCN+/HNC+ isomers is discussed and a short summary of the values available in the literature is given.
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Affiliation(s)
- Bérenger Gans
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214 CNRS, Univ. Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France.
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5
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Li YK, Wang ZC, He SG, Bierbaum VM. Reactions of Sulfur- and Oxygen-Containing Anions with Hydrogen Atoms: A Comparative Study. J Phys Chem Lett 2017; 8:5725-5729. [PMID: 29116795 DOI: 10.1021/acs.jpclett.7b02641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Reactions of hydrogen atoms with small sulfur-containing anions, SCN-, CH3COS-, C6H5COS-, -SCH2COOH, C6H5S-, 2-HOOCC6H4S-, and related oxygen-containing anions, OCN-, CH3COO-, C6H5COO-, HOCH2COO-, C6H5O-, 2-HOOCC6H4O-, have been studied both experimentally and computationally. The experimental results show that associative electron detachment (AED) is the only channel for the reactions. The rate constants for reactions between sulfur-containing anions and H atoms are generally higher than for the related oxygen-containing anions with the exception of the reaction of SCN-. The generally higher reactivity of the sulfur anions contrasts with previous results where AED reactivity was found to correlate with reaction exothermicity. Density functional theory calculations indicate that the reaction enthalpies, the characteristics of the reaction potential energy surfaces, and other structural and electronic factors can influence the reaction rate constants. This study indicates that organic sulfur anions can be more reactive than related oxygen anions in the interstellar medium where hydrogen atoms are abundant.
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Affiliation(s)
- Ya-Ke Li
- Department of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309, United States
- State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
- University of Chinese Academy of Sciences , Beijing 100049, China
| | - Zhe-Chen Wang
- Department of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309, United States
| | - Sheng-Gui He
- State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
- University of Chinese Academy of Sciences , Beijing 100049, China
| | - Veronica M Bierbaum
- Department of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309, United States
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6
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Le HA, Frankcombe TJ, Collins MA. Reaction Dynamics of H3+ + CO on an Interpolated Potential Energy Surface. J Phys Chem A 2010; 114:10783-8. [DOI: 10.1021/jp1060182] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Hai-Anh Le
- Research School of Chemistry, Australian National University, ACT 0200 Australia
| | - Terry J. Frankcombe
- Research School of Chemistry, Australian National University, ACT 0200 Australia
| | - Michael A. Collins
- Research School of Chemistry, Australian National University, ACT 0200 Australia
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7
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Ramazani S, Frankcombe TJ, Andersson S, Collins MA. The dynamics of the H2+CO+ reaction on an interpolated potential energy surface. J Chem Phys 2009; 130:244302. [DOI: 10.1063/1.3156805] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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8
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Geppert W, Larsson M. Dissociative recombination in the interstellar medium and planetary ionospheres. Mol Phys 2008. [DOI: 10.1080/00268970802322074] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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9
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Snow TP, Bierbaum VM. Ion chemistry in the interstellar medium. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2008; 1:229-259. [PMID: 20636080 DOI: 10.1146/annurev.anchem.1.031207.112907] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
We present an overview of the interstellar medium, including physical and chemical conditions, spectroscopic observations, and current challenges in characterizing interstellar chemistry. Laboratory studies of ion-atom reactions, including experimental approaches and instrumentation, are described. We also tabulate and discuss comprehensive summaries of ion-neutral reactions involving hydrogen, nitrogen, and oxygen atoms that have been studied since Sablier and Rolando's 1993 review.
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Affiliation(s)
- Theodore P Snow
- Center for Astrophysics and Space Astronomy, Department of Astrophysical and Planetary Sciences, University of Colorado, Boulder, 80309, USA.
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Cooks RG, Chen H, Eberlin MN, Zheng X, Tao WA. Polar Acetalization and Transacetalization in the Gas Phase: The Eberlin Reaction. Chem Rev 2006; 106:188-211. [PMID: 16402776 DOI: 10.1021/cr0400921] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- R G Cooks
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA.
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11
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Jacox ME, Thompson WE. Infrared spectra of NH2NO, NH2NO+, and NNOH+ and of the N2⋯H2O complex trapped in solid neon. J Chem Phys 2005; 123:64501. [PMID: 16122320 DOI: 10.1063/1.1993591] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
When a Ne:H2:N2O mixture is co-deposited at 4.3 K with a beam of neon atoms that have been excited in a microwave discharge, NH2NO+ is stabilized in sufficient concentration for detection of five of its vibrational fundamentals. Their assignments are supported by isotopic substitution studies and by the results of unrestricted B3LYP/cc-pVTZ calculations. Electron recombination results in the stabilization of NH2NO, for which the previously reported argon-matrix assignments are confirmed and extended. The OH-stretching fundamental of NNOH+ also is present in the spectrum of the initial sample deposit, but because of proton sharing with the neon matrix is shifted 43.3 cm(-1) from the gas-phase band center. The OD-stretching fundamental of NNOD+ is identified for the first time in the present study. An absorption at 2311.1 cm(-1) is contributed by the NN-stretching vibration of a complex of N2, probably with an ionic species. On prolonged visible and near-ultraviolet irradiation of the deposit, absorptions of the binary N2...H2O complex become increasingly prominent.
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Affiliation(s)
- Marilyn E Jacox
- Optical Technology Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899-8441, USA.
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12
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Jacox ME, Thompson WE. Infrared spectra of HOCO+ and of the complex of H2 with CO2− trapped in solid neon. J Chem Phys 2003. [DOI: 10.1063/1.1621383] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
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14
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Fox JL. Effect of H2on the Martian ionosphere: Implications for atmospheric evolution. ACTA ACUST UNITED AC 2003. [DOI: 10.1029/2001ja000203] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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15
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Krasnopolsky VA. Mars' upper atmosphere and ionosphere at low, medium, and high solar activities: Implications for evolution of water. ACTA ACUST UNITED AC 2002. [DOI: 10.1029/2001je001809] [Citation(s) in RCA: 188] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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16
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Fox JL, Sung KY. Solar activity variations of the Venus thermosphere/ionosphere. ACTA ACUST UNITED AC 2001. [DOI: 10.1029/2001ja000069] [Citation(s) in RCA: 163] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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17
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Demirev PA. Generation of hydrogen radicals for reactivity studies in Fourier transform ion cyclotron resonance mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2000; 14:777-781. [PMID: 10825016 DOI: 10.1002/(sici)1097-0231(20000515)14:9<777::aid-rcm943>3.0.co;2-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
An efficient technique for generation of H* (D*) radicals in Fourier transform ion cyclotron resonance (FTICR) mass spectrometry is described. The method allows the probing of the reactivity of gas-phase H* radicals towards various ions isolated in the cell of an FTICR mass spectrometer. Results on interactions of H* and D* radicals with trapped positive or negative C60 fullerene ions, as well as singly charged peptide ions, are presented. Hydrogen radical addition or H/D-exchange reactions between trapped ions and free H* (D*) radicals were observed. Potential implementation of the technique for probing the gas-phase three-dimensional structures of polyatomic ions is discussed as well.
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Affiliation(s)
- P A Demirev
- Department of Chemistry and Biochemistry, University of Maryland, College Park 20742, USA.
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Fairley DA, Scott GB, Milligan DB, Maclagan RG, McEwan MJ. SIFDT study of the SO+2/H2 H-atom abstraction reaction. ACTA ACUST UNITED AC 1998. [DOI: 10.1016/s0168-1176(97)00242-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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19
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Scott GBI, Fairley DA, Freeman CG, McEwan MJ, Adams NG, Babcock LM. CmHn+ Reactions with H and H2: An Experimental Study. J Phys Chem A 1997. [DOI: 10.1021/jp9706947] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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