1
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Shirkov L. Ab Initio Potentials for the Ground S0 and the First Electronically Excited Singlet S1 States of Benzene-Helium with Application to Tunneling Intermolecular Vibrational States. J Phys Chem A 2024; 128:6132-6139. [PMID: 39016462 PMCID: PMC11299187 DOI: 10.1021/acs.jpca.4c01491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 06/19/2024] [Accepted: 06/24/2024] [Indexed: 07/18/2024]
Abstract
We present new ab initio intermolecular potential energy surfaces for the benzene-helium complex in its ground (S0) and first excited (S1) states. The coupled-cluster level of theory with single, double, and perturbative triple excitations, CCSD(T), was used to calculate the ground state potential. The excited state potential was obtained by adding the excitation energies S0 → S1 of the complex, calculated using the equation of motion approach EOM-CCSD, to the ground state potential interaction energies. Analytical potentials are constructed and applied to study the structural and vibrational dynamics of benzene-helium. The binding energies and equilibrium distances of the ground and excited states were found to be 89 cm-1, 3.14 Å and 77 cm-1, 3.20 Å, respectively. The calculated vibrational energy levels exhibit tunneling of He through the benzene plane and are in reasonable agreement with recently reported experimental values for both the ground and excited states [Hayashi, M.; Ohshima, Y. J. Phys. Chem. Lett. 2020, 11, 9745]. Prospects for the theoretical study of complexes with large aromatic molecules and He are also discussed.
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Affiliation(s)
- Leonid Shirkov
- Institute of Physics, Polish Academy of Sciences, Al. Lotników 32/46, 02-668 Warsaw, Poland
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2
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Rutskoy B, Ozerov G, Bezrukov D. The Role of Bond Functions in Describing Intermolecular Electron Correlation for Van der Waals Dimers: A Study of (CH 4) 2 and Ne 2. Int J Mol Sci 2024; 25:1472. [PMID: 38338750 PMCID: PMC10855067 DOI: 10.3390/ijms25031472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 01/19/2024] [Accepted: 01/22/2024] [Indexed: 02/12/2024] Open
Abstract
We present a study of the intermolecular interactions in van der Waals complexes of methane and neon dimers within the framework of the CCSD method. This approach was implemented and applied to calculate and examine the behavior of the contracted two-particle reduced density matrix (2-RDM). It was demonstrated that the region near the minimum of the two-particle density matrix correlation part, corresponding to the primary bulk of the Coulomb hole contribution, exerts a significant influence on the dispersion interaction energetics of the studied systems. As a result, the bond functions approach was applied to improve the convergence performance for the intermolecular correlation energy results with respect to the size of the atomic basis. For this, substantial acceleration was achieved by introducing an auxiliary basis of bond functions centered on the minima of the 2-RDM. For both methane and neon dimers, this general conclusion was confirmed with a series of CCSD calculations for the 2-RDM and the correlation energies.
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Affiliation(s)
- Bogdan Rutskoy
- National Research Centre “Kurchatov Institute”, Moscow 123182, Russia;
- Institute of Nuclear Physics and Technology, National Research Nuclear University “MEPhI” (Moscow Engineering Physics Institute), Moscow 115409, Russia
- Chemistry Department, M.V. Lomonosov Moscow State University, Moscow 119991, Russia;
| | - Georgiy Ozerov
- Chemistry Department, M.V. Lomonosov Moscow State University, Moscow 119991, Russia;
| | - Dmitry Bezrukov
- Chemistry Department, M.V. Lomonosov Moscow State University, Moscow 119991, Russia;
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3
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Fernández B, Pi M, de Lara-Castells MP. Superfluid helium droplet-mediated surface-deposition of neutral and charged silver atomic species. Phys Chem Chem Phys 2023. [PMID: 37317779 DOI: 10.1039/d3cp01303k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Experimental and theoretical work has delivered evidence of the helium nanodroplet-mediated synthesis and soft-landing of metal nanoparticles, nanowires, clusters, and single atoms on solid supports. Recent experimental advances have allowed the formation of charged metal clusters into multiply charged helium nanodroplets. The impact of the charge of immersed metal species in helium nanodroplet-mediated surface deposition is proved by considering silver atoms and cations at zero-temperature graphene as the support. By combining high-level ab initio intermolecular interaction theory with a full quantum description of the superfluid helium nanodroplet motion, evidence is presented that the fundamental mechanism of soft-deposition is preserved in spite of the much stronger interaction of charged species with surfaces, with high-density fluctuations in the helium droplet playing an essential role in braking them. Corroboration is also presented that the soft-landing becomes favored as the helium nanodroplet size increases.
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Affiliation(s)
- Berta Fernández
- Department of Physical Chemistry, University of Santiago de Compostela, E-15782 Santiago de Compostela, Spain
| | - Martí Pi
- Departament FQA, Facultat de Física, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona, 08028 Barcelona, Spain
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4
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Kumawat RL, Sherrill CD. High-Order Quantum-Mechanical Analysis of Hydrogen Bonding in Hachimoji and Natural DNA Base Pairs. J Chem Inf Model 2023; 63:3150-3157. [PMID: 37125692 DOI: 10.1021/acs.jcim.3c00428] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
High-order quantum chemistry is applied to hydrogen-bonded natural DNA nucleobase pairs [adenine:thymine (A:T) and guanine:cytosine (G:C)] and non-natural Hachimoji nucleobase pairs [isoguanine:1-methylcytosine (B:S) and 2-aminoimidazo[1,2a][1,3,5]triazin-4(1H)-one:6-amino-5-nitropyridin-2-one (P:Z)] to see how the intermolecular interaction energies and their energetic components (electrostatics, exchange-repulsion, induction/polarization, and London dispersion interactions) vary among the base pairs. We examined the Hoogsteen (HG) geometries in addition to the traditional Watson-Crick (WC) geometries. Coupled-cluster theory through perturbative triples [CCSD(T)] extrapolated to the complete basis set (CBS) limit and high-order symmetry-adapted perturbation theory (SAPT) at the SAPT2+(3)(CCD)δMP2/aug-cc-pVTZ level are used to estimate highly accurate noncovalent interaction energies. Electrostatic interactions are the most attractive component of the interaction energies, but the sum of induction/polarization and London dispersion is nearly as large, for all base pairs and geometries considered. Interestingly, the non-natural Hachimoji base pairs interact more strongly than the corresponding natural base pairs, by -21.8 (B:S) and -0.3 (P:Z) kcal mol-1 in the WC geometries, according to CCSD(T)/CBS. This is consistent with the H-bond distances being generally shorter in the non-natural base pairs. The natural base pairs are energetically more stabilized in their Hoogsteen geometries than in their WC geometries. The Hoogsteen geometry makes the A:T base pair slightly more stable, by -0.8 kcal mol-1, and it greatly stabilizes the G:C+ base pair, by -15.3 kcal mol-1. The G:C+ stabilization is mainly due to the fact that C has typically added a proton when found in Hoogsteen geometries. By contrast, Hoogsteen geometries are substantially less favorable than WC geometries for non-natural Hachimoji base pairs, by 17.3 (B:S) and 13.8 (P:Z) kcal mol-1.
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Affiliation(s)
- Rameshwar L Kumawat
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - C David Sherrill
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
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5
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Matveeva R, Falck Erichsen M, Koch H, Høyvik IM. The effect of midbond functions on interaction energies computed using MP2 and CCSD(T). J Comput Chem 2022; 43:121-131. [PMID: 34738658 DOI: 10.1002/jcc.26777] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 10/08/2021] [Accepted: 10/12/2021] [Indexed: 11/06/2022]
Abstract
In this article we use MP2 and CCSD(T) calculations for the A24 and S66 data sets to explore how midbond functions can be used to generate cost effective counterpoise corrected supramolecular interaction energies of noncovalent complexes. We use the A24 data set to show that the primary role of midbond functions is not to approach the complete basis set limit, but rather to ensure a balanced description of the molecules and the interaction region (unrelated to the basis set superposition error). The need for balance is a consequence of using atom centered basis sets. In the complete basis set limit, the error will disappear, but reaching the complete basis set limit is not feasible beyond small systems. For S66 we investigate the need for increasing the number of midbond centers. Results show that adding a second midbond center increases the accuracy, but the effect is secondary to changing the atom centered basis set. Further, by comparing calculations using the 3s3p2d1f1g midbond set with using aug-cc-pVDZ and aug-cc-pVTZ as midbond sets, we see that the requirements for the midbond set to be effective, is not just that it contains diffuse functions, but also that high angular momentum functions are included. By comparing two approaches for placing midbond centers we show that results are not particularly sensitive to placement as long as the placement is reasonable.
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Affiliation(s)
- Regina Matveeva
- Department of Chemistry, Norwegian University of Science and Technology (NTNU), Trondheim, Norway
| | - Merete Falck Erichsen
- Department of Chemistry, Norwegian University of Science and Technology (NTNU), Trondheim, Norway
| | - Henrik Koch
- Department of Chemistry, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.,Scuola Normale Superiore, Pisa, Italy
| | - Ida-Marie Høyvik
- Department of Chemistry, Norwegian University of Science and Technology (NTNU), Trondheim, Norway
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6
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Konrad M, Wenzel W. CONI-Net: Machine Learning of Separable Intermolecular Force Fields. J Chem Theory Comput 2021; 17:4996-5006. [PMID: 34247485 DOI: 10.1021/acs.jctc.1c00328] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Noncovalent interactions (NCIs) play an essential role in soft matter and biomolecular simulations. The ab initio method symmetry-adapted perturbation theory allows a precise quantitative analysis of NCIs and offers an inherent energy decomposition, enabling a deeper understanding of the nature of intermolecular interactions. However, this method is limited to small systems, for instance, dimers of molecules. Here, we present a scale-bridging approach to systematically derive an intermolecular force field from ab initio data while preserving the energy decomposition of the underlying method. We apply the model in molecular dynamics simulations of several solvents and compare two predicted thermodynamic observables-mass density and enthalpy of vaporization-to experiments and established force fields. For a data set limited to hydrocarbons, we investigate the extrapolation capabilities to molecules absent from the training set. Overall, despite the affordable moderate quality of the reference ab initio data, we find promising results. With the straightforward data set generation procedure and the lack of target data in the fitting process, we have developed a method that enables the rapid development of predictive force fields with an extra dimension of insights into the balance of NCIs.
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Affiliation(s)
- Manuel Konrad
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany
| | - Wolfgang Wenzel
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen 76344, Germany
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7
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Řezáč J. Non-Covalent Interactions Atlas Benchmark Data Sets: Hydrogen Bonding. J Chem Theory Comput 2020; 16:2355-2368. [DOI: 10.1021/acs.jctc.9b01265] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Jan Řezáč
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 166 10 Prague, Czech Republic
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8
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Chen JL, Sun T, Wang YB, Wang W. Toward a less costly but accurate calculation of the CCSD(T)/CBS noncovalent interaction energy. J Comput Chem 2020; 41:1252-1260. [PMID: 32045021 DOI: 10.1002/jcc.26171] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2019] [Revised: 01/12/2020] [Accepted: 02/01/2020] [Indexed: 01/14/2023]
Abstract
The popular method of calculating the noncovalent interaction energies at the coupled-cluster single-, double-, and perturbative triple-excitations [CCSD(T)] theory level in the complete basis set (CBS) limit was to add a CCSD(T) correction term to the CBS second-order Møller-Plesset perturbation theory (MP2). The CCSD(T) correction term is the difference between the CCSD(T) and MP2 interaction energies evaluated in a medium basis set. However, the CCSD(T) calculations with the medium basis sets are still very expensive for systems with more than 30 atoms. Comparatively, the domain-based local pair natural orbital coupled-cluster method [DLPNO-CCSD(T)] can be applied to large systems with over 1,000 atoms. Considering both the computational accuracy and efficiency, in this work, we propose a new scheme to calculate the CCSD(T)/CBS interaction energies. In this scheme, the MP2/CBS term keeps intact and the CCSD(T) correction term is replaced by a DLPNO-CCSD(T) correction term which is the difference between the DLPNO-CCSD(T) and DLPNO-MP2 interaction energies evaluated in a medium basis set. The interaction energies of the noncovalent systems in the S22, HSG, HBC6, NBC10, and S66 databases were recalculated employing this new scheme. The consistent and tight settings of the truncation parameters for DLPNO-CCSD(T) and DLPNO-MP2 in this noncanonical CCSD(T)/CBS calculations lead to the maximum absolute deviation and root-mean-square deviation from the canonical CCSD(T)/CBS interaction energies of less than or equal to 0.28 kcal/mol and 0.09 kcal/mol, respectively. The high accuracy and low cost of this new computational scheme make it an excellent candidate for the study of large noncovalent systems.
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Affiliation(s)
- Jiu-Li Chen
- Department of Chemistry, and Key Laboratory of Guizhou High Performance Computational Chemistry, Guizhou University, Guiyang, China
| | - Tao Sun
- Department of Chemistry, and Key Laboratory of Guizhou High Performance Computational Chemistry, Guizhou University, Guiyang, China
| | - Yi-Bo Wang
- Department of Chemistry, and Key Laboratory of Guizhou High Performance Computational Chemistry, Guizhou University, Guiyang, China
| | - Weizhou Wang
- College of Chemistry and Chemical Engineering, and Henan Key Laboratory of Function-Oriented Porous Materials, Luoyang Normal University, Luoyang, China
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9
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Wójcik P, Korona T, Tomza M. Interactions of benzene, naphthalene, and azulene with alkali-metal and alkaline-earth-metal atoms for ultracold studies. J Chem Phys 2019; 150:234106. [PMID: 31228913 DOI: 10.1063/1.5094907] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We consider collisional properties of polyatomic aromatic hydrocarbon molecules immersed into ultracold atomic gases and investigate intermolecular interactions of exemplary benzene, naphthalene, and azulene with alkali-metal (Li, Na, K, Rb, and Cs) and alkaline-earth-metal (Mg, Ca, Sr, and Ba) atoms. We apply the state-of-the-art ab initio techniques to compute the potential energy surfaces (PESs). We use the coupled cluster method restricted to single, double, and noniterative triple excitations to reproduce the correlation energy and the small-core energy-consistent pseudopotentials to model the scalar relativistic effects in heavier metal atoms. We also report the leading long-range isotropic and anisotropic dispersion and induction interaction coefficients. The PESs are characterized in detail, and the nature of intermolecular interactions is analyzed and benchmarked using symmetry-adapted perturbation theory. The full three-dimensional PESs are provided for the selected systems within the atom-bond pairwise additive representation and can be employed in scattering calculations. The present study of the electronic structure is the first step toward the evaluation of prospects for sympathetic cooling of polyatomic aromatic molecules with ultracold atoms. We suggest azulene, an isomer of naphthalene which possesses a significant permanent electric dipole moment and optical transitions in the visible range, as a promising candidate for electric field manipulation and buffer-gas or sympathetic cooling.
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Affiliation(s)
- Paweł Wójcik
- Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland
| | - Tatiana Korona
- Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
| | - Michał Tomza
- Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland
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10
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Makarewicz J, Shirkov L. Theoretical study of the complexes of dichlorobenzene isomers with argon. I. Global potential energy surface for all the isomers with application to intermolecular vibrations. J Chem Phys 2019; 150:074301. [PMID: 30795660 DOI: 10.1063/1.5053801] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The complexes of para- (p-), meta- (m-), and ortho- (o-)dichlorobenzene (DCB) isomers with argon are studied using an ab initio method. The interaction energy in the ground electronic state of the complexes has been calculated using the CCSD(T) method (coupled cluster method including single and double excitations with perturbative triple excitations) and Dunning's double-ζ (aug-cc-pVDZ) basis set supplemented by midbond functions. Local interaction parameters have been defined and interesting relations fulfilled by them, independent of the DCB isomer, have been revealed. This finding has allowed us to construct the accurate global analytical intermolecular potential energy surface for all the DCB-Ar complexes with the same set of parameters, except for the monomer geometries. Each complex is characterized by two symmetrically equivalent global minima, one located above and the other located below the monomer plane at distances equal to 3.497 Å, 3.494 Å, and 3.485 Å for p-, m-, and o-isomers of DCB bound to Ar, respectively. Additionally, the Ar atom is shifted from the geometrical center of the DCB monomer towards the chlorine atoms by the value xe of 0.182 Å for m-isomer and 0.458 Å for o-isomer. The calculated binding energy De of 460 cm-1, 465 cm-1, and 478 cm-1 for p-, m-, and o-complex, respectively, are related to xe by simple relations. The intermolecular bending fundamentals calculated from PES depend strongly on the isomer structure. The calculated dissociation energies fit in the intervals estimated by the experiment of Gaber et al. for the S0 state [Phys. Chem. Chem. Phys. 11, 1628 (2009)].
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Affiliation(s)
- Jan Makarewicz
- Faculty of Chemistry, Adam Mickiewicz University, Umultowska 89b, 61-614 Poznań, Poland
| | - Leonid Shirkov
- Faculty of Chemistry, Adam Mickiewicz University, Umultowska 89b, 61-614 Poznań, Poland
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11
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Ma Q, Werner HJ. Accurate Intermolecular Interaction Energies Using Explicitly Correlated Local Coupled Cluster Methods [PNO-LCCSD(T)-F12]. J Chem Theory Comput 2019; 15:1044-1052. [DOI: 10.1021/acs.jctc.8b01098] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Qianli Ma
- Institut für Theoretische Chemie, Universität Stuttgart, Pfaffenwaldring 55, D-70569 Stuttgart, Germany
| | - Hans-Joachim Werner
- Institut für Theoretische Chemie, Universität Stuttgart, Pfaffenwaldring 55, D-70569 Stuttgart, Germany
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12
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Sirianni DA, Alenaizan A, Cheney DL, Sherrill CD. Assessment of Density Functional Methods for Geometry Optimization of Bimolecular van der Waals Complexes. J Chem Theory Comput 2018; 14:3004-3013. [PMID: 29763302 DOI: 10.1021/acs.jctc.8b00114] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We explore the suitability of three popular density functionals (B97-D3, B3LYP-D3, M05-2X) for producing accurate equilibrium geometries of van der Waals (vdW) complexes with diverse binding motifs. For these functionals, optimizations using Dunning's aug-cc-pVDZ basis set best combine accuracy and a reasonable computational expense. Each DFT/aug-cc-pVDZ combination produces optimized equilibrium geometries for 21 small vdW complexes of organic molecules (up to four non-hydrogen atoms total) that agree with high-level CCSD(T)/CBS reference geometries to within ±0.1 Å for the averages of the center-of-mass displacement and the mean least root-mean-squared displacement. The DFT/aug-cc-pVDZ combinations are also able to reproduce the optimal center-of-mass displacements interpolated from CCSD(T)/CBS radial potential energy surfaces in both NBC7x and HBC6 test sets to within ±0.1 Å. We therefore conclude that each of these denisty functional methods, together with the aug-cc-pVDZ basis set, is suitable for producing equilibrium geometries of generic nonbonded complexes.
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Affiliation(s)
- Dominic A Sirianni
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry , Georgia Institute of Technology , Atlanta , Georgia 30332-0400 , United States
| | - Asem Alenaizan
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry , Georgia Institute of Technology , Atlanta , Georgia 30332-0400 , United States
| | - Daniel L Cheney
- Molecular Structure and Design , Bristol-Myers Squibb Company , P.O. Box 5400, Princeton , New Jersey 08543 , United States
| | - C David Sherrill
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering , Georgia Institute of Technology , Atlanta , Georgia 30332-0400 , United States
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13
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Dagdigian PJ. Interaction of C 2H with molecular hydrogen: Ab initio potential energy surface and scattering calculations. J Chem Phys 2018; 148:024304. [PMID: 29331109 DOI: 10.1063/1.5006149] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The potential energy surface (PES) describing the interaction of the ethynyl (C2H) radical in its ground X̃2Σ+ electronic state with molecular hydrogen has been computed through restricted coupled cluster calculations including single, double, and (perturbative) triple excitations [RCCSD(T)], with the assumption of fixed molecular geometries. The computed points were fit to an analytical form suitable for time-independent quantum scattering calculations of rotationally inelastic cross sections and rate constants. A representative set of energy dependent state-to-state cross sections is presented and discussed. The PES and cross sections for collisions of H2(j = 0) are compared with a previous study [F. Najar et al., Chem. Phys. Lett. 614, 251 (2014)] of collisions of C2H with H2 treated as a spherical collision partner. Good agreement is found between the two sets of calculations when the H2 molecule in the present calculation is spherically averaged.
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Affiliation(s)
- Paul J Dagdigian
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218-2685, USA
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14
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Shirkov L, Sladek V. Benchmark CCSD-SAPT study of rare gas dimers with comparison to MP-SAPT and DFT-SAPT. J Chem Phys 2017; 147:174103. [DOI: 10.1063/1.4997569] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Leonid Shirkov
- Faculty of Chemistry, Adam Mickiewicz University, Umultowska 89b, 61-614 Poznań, Poland
| | - Vladimir Sladek
- Institute of Chemistry–Centre for Glycomics, Slovak Academy of Sciences, 845 38 Bratislava, Slovakia
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15
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Yang X, Rees RJ, Conway W, Puxty G, Yang Q, Winkler DA. Computational Modeling and Simulation of CO2 Capture by Aqueous Amines. Chem Rev 2017; 117:9524-9593. [PMID: 28517929 DOI: 10.1021/acs.chemrev.6b00662] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Xin Yang
- CSIRO Manufacturing, Bayview Avenue, Clayton 3169, Australia
- College
of Chemistry, Key Lab of Green Chemistry and Technology in Ministry
of Education, Sichuan University, Chengdu 610064, People’s Republic of China
| | - Robert J. Rees
- Data61
- CSIRO, Door 34 Goods
Shed, Village Street, Docklands VIC 3008, Australia
| | | | | | - Qi Yang
- CSIRO Manufacturing, Bayview Avenue, Clayton 3169, Australia
| | - David A. Winkler
- CSIRO Manufacturing, Bayview Avenue, Clayton 3169, Australia
- Monash Institute of Pharmaceutical Sciences, 392 Royal Parade, Parkville 3052, Australia
- Latrobe Institute for Molecular Science, Bundoora 3046, Australia
- School
of
Chemical and Physical Science, Flinders University, Bedford Park 5042, Australia
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16
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Ryazantsev SV, Tarroni R, Feldman VI, Khriachtchev L. Effect of Noncovalent Interactions on Vibronic Transitions: An Experimental and Theoretical Study of the C2
H⋅⋅⋅CO2
Complex. Chemphyschem 2017; 18:949-958. [DOI: 10.1002/cphc.201601441] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Revised: 01/20/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Sergey V. Ryazantsev
- Department of Chemistry; University of Helsinki; P. O. Box 55 FI-00014 Helsinki Finland
- Department of Chemistry; Lomonosov Moscow State University; Moscow 119991 Russia
| | - Riccardo Tarroni
- Dipartimento di Chimica Industriale “Toso Montanari”; Università di Bologna, Viale; Risorgimento 4 40136 Bologna Italy
| | - Vladimir I. Feldman
- Department of Chemistry; Lomonosov Moscow State University; Moscow 119991 Russia
| | - Leonid Khriachtchev
- Department of Chemistry; University of Helsinki; P. O. Box 55 FI-00014 Helsinki Finland
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17
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Sirianni DA, Burns LA, Sherrill CD. Comparison of Explicitly Correlated Methods for Computing High-Accuracy Benchmark Energies for Noncovalent Interactions. J Chem Theory Comput 2016; 13:86-99. [DOI: 10.1021/acs.jctc.6b00797] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dominic A. Sirianni
- Center for Computational
Molecular Science and Technology, School of Chemistry and Biochemistry,
School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Lori A. Burns
- Center for Computational
Molecular Science and Technology, School of Chemistry and Biochemistry,
School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - C. David Sherrill
- Center for Computational
Molecular Science and Technology, School of Chemistry and Biochemistry,
School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
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18
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Baggioli A, Cavallotti CA, Famulari A. Exploring short intramolecular interactions in alkylaromatic substrates. Phys Chem Chem Phys 2016; 18:29616-29628. [PMID: 27753437 DOI: 10.1039/c6cp03323g] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
From proteins and peptides to semiconducting polymers, aliphatic chains on aromatic groups are recurring motifs in macromolecules from very diverse application fields. Fields in which molecular folding and packing determine the macroscopic physical properties that make such advanced materials appealing in the first place. Within each macromolecule, the intrinsic structure of each unit defines how it interacts with its neighbours, ultimately opening up or denying certain backbone conformations. This eventually also determines how macromolecules interact with each other. This account deals specifically with the conformational problem of many common alkylaromatic units, examining the features of an intramolecular interaction involving a side chain with as few as three methylene groups. A set of 23 model compounds featuring an intramolecular interaction between an aliphatic X-H (X = C, N, O, and S) bond and an aromatic ring was considered. Quantitative computational analysis was made possible, thanks to complete basis set extrapolated CCSD(T) calculations and NCI topological analysis, the latter of which revealed an elaborate network of dispersive and steric interactions leading to somewhat unintuitive and unexpected results, such as the higher energetic stability of certain twisted conformational isomers over those with extended side chains. Vicinal covalent effects from polarizing groups and various heteroatoms, along with the occurrence of non-dispersive phenomena, were also investigated. The conclusions drawn from the investigation include a comprehensive set of guidelines intended to aid in the prediction of the most stable conformation for this class of building blocks. Our findings affect a variety of different research fields, including the tailoring of functional materials for organic electronics and photovoltaics, with insights into a rational treatment of conformational disorder, and the study of protein- and peptide-folding preferences, putting an emphasis on peculiar interactions between the backbone and aromatic residues.
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Affiliation(s)
- Alberto Baggioli
- Dipartimento di Chimica, Materiali e Ingegneria Chimica "G. Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
| | - Carlo A Cavallotti
- Dipartimento di Chimica, Materiali e Ingegneria Chimica "G. Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
| | - Antonino Famulari
- Dipartimento di Chimica, Materiali e Ingegneria Chimica "G. Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
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19
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Hjertenæs E, Trinh TT, Koch H. Chemically accurate energy barriers of small gas molecules moving through hexagonal water rings. Phys Chem Chem Phys 2016; 18:17831-5. [PMID: 27345929 DOI: 10.1039/c6cp02651f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present chemically accurate potential energy curves of CH4, CO2 and H2 moving through hexagonal water rings, calculated by CCSD(T)/aug-cc-pVTZ with counterpoise correction. The barriers are extracted from a potential energy surface obtained by allowing the water ring to expand while the gas molecule diffuses through. State-of-the-art XC-functionals are evaluated against the CCSD(T) potential energy surface.
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Affiliation(s)
- Eirik Hjertenæs
- Department of Chemistry, NTNU-Norwegian University of Science and Technology, Høgskoleringen 5, 7491-Trondheim, Norway.
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20
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Makarewicz J, Shirkov L. Character of intermolecular interaction in pyridine-argon complex: Ab initio potential energy surface, internal dynamics, and interrelations between SAPT energy components. J Chem Phys 2016; 144:204115. [PMID: 27250287 DOI: 10.1063/1.4950955] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The pyridine-Ar (PAr) van der Waals (vdW) complex is studied using a high level ab initio method. Its structure, binding energy, and intermolecular vibrational states are determined from the analytical potential energy surface constructed from interaction energy (IE) values computed at the coupled cluster level of theory with single, double, and perturbatively included triple excitations with the augmented correlation consistent polarized valence double-ζ (aug-cc-pVDZ) basis set complemented by midbond functions. The structure of the complex at its global minimum with Ar at a distance of 3.509 Å from the pyridine plane and shifted by 0.218 Å from the center of mass towards nitrogen agrees well with the corresponding equilibrium structure derived previously from the rotational spectrum of PAr. The PAr binding energy De of 392 cm(-1) is close to that of 387 cm(-1) calculated earlier at the same ab initio level for the prototypical benzene-Ar (BAr) complex. However, under an extension of the basis set, De for PAr becomes slightly lower than De for BAr. The ab initio vdW vibrational energy levels allow us to estimate the reliability of the methods for the determination of the vdW fundamentals from the rotational spectra. To disclose the character of the intermolecular interaction in PAr, the symmetry-adapted perturbation theory (SAPT) is employed for the analysis of different physical contributions to IE. It is found that SAPT components of IE can be approximately expressed in the binding region by only two of them: the exchange repulsion and dispersion energy. The total induction effect is negligible. The interrelations between various SAPT components found for PAr are fulfilled for a few other complexes involving aromatic molecules and Ar or Ne, which indicates that they are valid for all rare gas (Rg) atoms and aromatics.
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Affiliation(s)
- Jan Makarewicz
- Faculty of Chemistry, Adam Mickiewicz University, Umultowska 89b, 61-614 Poznań, Poland
| | - Leonid Shirkov
- Faculty of Chemistry, Adam Mickiewicz University, Umultowska 89b, 61-614 Poznań, Poland
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21
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Řezáč J, Hobza P. Benchmark Calculations of Interaction Energies in Noncovalent Complexes and Their Applications. Chem Rev 2016; 116:5038-71. [DOI: 10.1021/acs.chemrev.5b00526] [Citation(s) in RCA: 281] [Impact Index Per Article: 35.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jan Řezáč
- Institute
of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 166 10 Prague, Czech Republic
| | - Pavel Hobza
- Institute
of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 166 10 Prague, Czech Republic
- Regional
Centre of Advanced Technologies and Materials, Department of Physical
Chemistry, Palacký University, 771 46 Olomouc, Czech Republic
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22
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Affiliation(s)
- Michal H. Kolář
- Institute
of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 16610 Prague, Czech Republic
- Institute
of Neuroscience and Medicine (INM-9) and Institute for Advanced Simulations
(IAS-5), Forschungszentrum Jülich GmbH, 52428 Jülich, Federal Republic of Germany
| | - Pavel Hobza
- Institute
of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 16610 Prague, Czech Republic
- Department
of Physical Chemistry, Regional Centre of Advanced Technologies and
Materials, Palacky University, 771 46 Olomouc, Czech Republic
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23
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Cybulski H, Henriksen C, Fernández B. Theoretical Study of the Pyridine-Helium van der Waals Complexes. J Phys Chem A 2015; 119:10999-1006. [PMID: 26479845 DOI: 10.1021/acs.jpca.5b08492] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In this study we evaluate a high-level ab initio ground-state intermolecular potential-energy surface for the pyridine-He van der Waals complex, using the CCSD(T) method and Dunning's augmented correlation consistent polarized valence double-ζ basis set extended with a set of 3s3p2d1f1g midbond functions. The potential is characterized by two symmetric global minima of -93.2 cm(-1) that correspond to geometries where the distance between the helium atom and the pyridine center of mass is 3.105 Å and the angle with respect to the pyridine c rotational axis is 3.9°. Six local minima can be observed for geometries with the helium atom in the plane cotaining the pyridine molecule. To further analyze the nature of the intermolecular interactions in the complex, we use symmetry-adapted perturbation theory (SAPT). Additional consideration of the pyridine-He2 complex provides a better insight into many-body nonadditive contributions to intermolecular interactions in systems with more helium atoms.
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Affiliation(s)
- Hubert Cybulski
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University , Grudziadzka 5, 87-100 Torun, Poland.,Department of Applied Mathematics and Computer Science, Technical University of Denmark , 2800 Kgs. Lynbgy, Denmark.,Department of Physical Chemistry and Center for Research in Biological Chemistry and Molecular Materials (CIQUS), University of Santiago de Compostela , 15782 Santiago de Compostela, Spain
| | - Christian Henriksen
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University , Grudziadzka 5, 87-100 Torun, Poland.,Department of Applied Mathematics and Computer Science, Technical University of Denmark , 2800 Kgs. Lynbgy, Denmark.,Department of Physical Chemistry and Center for Research in Biological Chemistry and Molecular Materials (CIQUS), University of Santiago de Compostela , 15782 Santiago de Compostela, Spain
| | - Berta Fernández
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University , Grudziadzka 5, 87-100 Torun, Poland.,Department of Applied Mathematics and Computer Science, Technical University of Denmark , 2800 Kgs. Lynbgy, Denmark.,Department of Physical Chemistry and Center for Research in Biological Chemistry and Molecular Materials (CIQUS), University of Santiago de Compostela , 15782 Santiago de Compostela, Spain
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24
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Řezáč J, Dubecký M, Jurečka P, Hobza P. Extensions and applications of the A24 data set of accurate interaction energies. Phys Chem Chem Phys 2015; 17:19268-77. [PMID: 26139028 DOI: 10.1039/c5cp03151f] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The A24 data set (Řezáč and Hobza, J. Chem. Theory Comput. 2013, 9, 2151-2155) is a set of noncovalent complexes large enough to showcase various types of interactions yet small enough to make highly accurate calculations possible. It is intended for the testing of accurate computational methods which are then used as a benchmark in larger model systems. In this work, we improve the best estimate of the interaction energies in the set by updating their CCSD(T)/CBS and CCSDT(Q) components with calculations in larger basis sets. The data set is then used to test a large number of composite CCSD(T) approaches. Special attention is paid to the use of the explicitly correlated MP2-F12 method in these composite calculations. It is shown that an accuracy of 1-2% can be achieved with setups applicable to larger molecules. The effect of frozen natural orbital approximation on the accuracy of composite CCSD(T)/CBS calculations is also quantified. In four trivially saturated complexes where CCSDT(Q)/CBS data are now available, the convergence of the many-body correlation effects is assessed by fixed-node diffusion Monte Carlo (FN-DMC) calculations. A good agreement is achieved between FN-DMC and high-level coupled-cluster which represents an important cross-check of both approaches.
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Affiliation(s)
- Jan Řezáč
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 166 10 Prague, Czech Republic.
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25
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Solimannejad M, Jouypazadeh H, Farrokhpour H. Ab initiointermolecular potential energy surface of Ne···NCCN van der Waals complex: effect of the place of midbond function on the interaction. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1020073] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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26
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Tozihi M, Farrokhpour H. Ab initiostudy of the Ar–CS 2(V 1B 2) intermolecular potential surface: effect of van der Waals interaction on the emission of CS 2molecule. Mol Phys 2015. [DOI: 10.1080/00268976.2014.954017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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27
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Mehio N, Lashely MA, Nugent JW, Tucker L, Correia B, Do-Thanh CL, Dai S, Hancock RD, Bryantsev VS. Acidity of the Amidoxime Functional Group in Aqueous Solution: A Combined Experimental and Computational Study. J Phys Chem B 2015; 119:3567-76. [DOI: 10.1021/jp512778x] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Nada Mehio
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996 United States
| | - Mark A. Lashely
- Department
of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, North Carolina 28403 United States
| | - Joseph W. Nugent
- Department
of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, North Carolina 28403 United States
| | - Lyndsay Tucker
- Department
of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, North Carolina 28403 United States
| | - Bruna Correia
- Department
of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, North Carolina 28403 United States
| | - Chi-Linh Do-Thanh
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996 United States
| | - Sheng Dai
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996 United States
- Chemical
Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 United States
| | - Robert D. Hancock
- Department
of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, North Carolina 28403 United States
| | - Vyacheslav S. Bryantsev
- Chemical
Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 United States
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28
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Riley KE, Ford CL, Demouchet K. Comparison of hydrogen bonds, halogen bonds, C H⋯π interactions, and C X⋯π interactions using high-level ab initio methods. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2014.12.040] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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29
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Tkáč O, Ma Q, Stei M, Orr-Ewing AJ, Dagdigian PJ. Rotationally inelastic scattering of methyl radicals with Ar and N2. J Chem Phys 2015; 142:014306. [PMID: 25573560 DOI: 10.1063/1.4904901] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
The rotationally inelastic scattering of methyl radical with Ar and N2 is examined at collision energies of 330 ± 25 cm(-1) and 425 ± 50 cm(-1), respectively. Differential cross sections (DCSs) were measured for different final n' rotational levels (up to n' = 5) of the methyl radicals, averaged over k' sub-levels, using a crossed molecular beam machine with velocity map imaging. For Ar as a collision partner, we present a newly constructed ab initio potential energy surface and quantum mechanical scattering calculations of state-resolved DCSs. These computed DCSs agree well with the measurements. The DCSs for both Ar and N2 collision partners are strongly forward peaked for all spectroscopic lines measured. For scattering angles below 60°, the theoretical CD3-Ar DCSs show diffraction oscillations that become less pronounced as n' increases, but these oscillations are not resolved experimentally. Comparisons are drawn with our recently reported DCSs for scattering of methyl radicals with He atoms.
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Affiliation(s)
- Ondřej Tkáč
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom
| | - Qianli Ma
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218-2685, USA
| | - Martin Stei
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
| | - Andrew J Orr-Ewing
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom
| | - Paul J Dagdigian
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218-2685, USA
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30
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Myhre RH, Sánchez de Merás AMJ, Koch H. Multi-level coupled cluster theory. J Chem Phys 2014; 141:224105. [DOI: 10.1063/1.4903195] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Rolf H. Myhre
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
- Department of Chemistry and the PULSE Institute, Stanford University, Stanford, California 94305, USA
| | | | - Henrik Koch
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
- Department of Chemistry and the PULSE Institute, Stanford University, Stanford, California 94305, USA
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31
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Cybulski H, Baranowska-Łączkowska A, Henriksen C, Fernández B. Small and efficient basis sets for the evaluation of accurate interaction energies: aromatic molecule-argon ground-state intermolecular potentials and rovibrational states. J Phys Chem A 2014; 118:10288-97. [PMID: 25317989 DOI: 10.1021/jp508317z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
By evaluating a representative set of CCSD(T) ground state interaction energies for van der Waals dimers formed by aromatic molecules and the argon atom, we test the performance of the polarized basis sets of Sadlej et al. (J. Comput. Chem. 2005, 26, 145; Collect. Czech. Chem. Commun. 1988, 53, 1995) and the augmented polarization-consistent bases of Jensen (J. Chem. Phys. 2002, 117, 9234) in providing accurate intermolecular potentials for the benzene-, naphthalene-, and anthracene-argon complexes. The basis sets are extended by addition of midbond functions. As reference we consider CCSD(T) results obtained with Dunning's bases. For the benzene complex a systematic basis set study resulted in the selection of the (Z)Pol-33211 and the aug-pc-1-33321 bases to obtain the intermolecular potential energy surface. The interaction energy values and the shape of the CCSD(T)/(Z)Pol-33211 calculated potential are very close to the best available CCSD(T)/aug-cc-pVTZ-33211 potential with the former basis set being considerably smaller. The corresponding differences for the CCSD(T)/aug-pc-1-33321 potential are larger. In the case of the naphthalene-argon complex, following a similar study, we selected the (Z)Pol-3322 and aug-pc-1-333221 bases. The potentials show four symmetric absolute minima with energies of -483.2 cm(-1) for the (Z)Pol-3322 and -486.7 cm(-1) for the aug-pc-1-333221 basis set. To further check the performance of the selected basis sets, we evaluate intermolecular bound states of the complexes. The differences between calculated vibrational levels using the CCSD(T)/(Z)Pol-33211 and CCSD(T)/aug-cc-pVTZ-33211 benzene-argon potentials are small and for the lowest energy levels do not exceed 0.70 cm(-1). Such differences are substantially larger for the CCSD(T)/aug-pc-1-33321 calculated potential. For naphthalene-argon, bound state calculations demonstrate that the (Z)Pol-3322 and aug-pc-1-333221 potentials are of similar quality. The results show that these surfaces differ substantially from the available MP2/aug-cc-pVDZ potential. For the anthracene-argon complex it proved advantageous to calculate interaction energies by using the (Z)Pol and the aug-pc-1 basis sets, and we expect it to be increasingly so for complexes containing larger aromatic molecules.
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Affiliation(s)
- Hubert Cybulski
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University , Grudziadzka 5, 87-100 Torun, Poland
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32
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Farrokhpour H, Tozihi M. The excited-states intermolecular potential energy surfaces of the Ar–CS2 van der Waals complex: Ab initio study. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.05.021] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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33
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Solimannejad M, Jouypazadeh H, Farrokhpour H. Ab initiointermolecular potential energy surfaces for the Ar–NCCN van der Waals complexes. Mol Phys 2014. [DOI: 10.1080/00268976.2014.918284] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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34
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Silvestrelli PL, Ambrosetti A. Including screening in van der Waals corrected density functional theory calculations: The case of atoms and small molecules physisorbed on graphene. J Chem Phys 2014; 140:124107. [PMID: 24697424 DOI: 10.1063/1.4869330] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Affiliation(s)
- Pier Luigi Silvestrelli
- Dipartimento di Fisica e Astronomia, Università di Padova, via Marzolo 8, I-35131 Padova, Italy and DEMOCRITOS National Simulation Center of the Italian Istituto Officina dei Materiali (IOM) of the Italian National Research Council (CNR), Trieste, Italy
| | - Alberto Ambrosetti
- Dipartimento di Fisica e Astronomia, Università di Padova, via Marzolo 8, I-35131 Padova, Italy and DEMOCRITOS National Simulation Center of the Italian Istituto Officina dei Materiali (IOM) of the Italian National Research Council (CNR), Trieste, Italy
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35
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Bryantsev VS, Uddin J, Giordani V, Walker W, Chase GV, Addison D. Predicting the Electrochemical Behavior of Lithium Nitrite in Acetonitrile with Quantum Chemical Methods. J Am Chem Soc 2014; 136:3087-96. [DOI: 10.1021/ja410766n] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
| | - Jasim Uddin
- Liox Power, Inc., 129 N. Hill Ave., Suite 103, Pasadena, California 91106, United States
| | - Vincent Giordani
- Liox Power, Inc., 129 N. Hill Ave., Suite 103, Pasadena, California 91106, United States
| | - Wesley Walker
- Liox Power, Inc., 129 N. Hill Ave., Suite 103, Pasadena, California 91106, United States
| | - Gregory V. Chase
- Liox Power, Inc., 129 N. Hill Ave., Suite 103, Pasadena, California 91106, United States
| | - Dan Addison
- Liox Power, Inc., 129 N. Hill Ave., Suite 103, Pasadena, California 91106, United States
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36
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Dagdigian PJ, Alexander MH. Exact quantum scattering calculations of transport properties for the H2O–H system. J Chem Phys 2013; 139:194309. [DOI: 10.1063/1.4829681] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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37
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Fukuda R, Ehara M. Theoretical study of the electronic excitations of free-base porphyrin-Ar2 van der Waals complexes. J Chem Phys 2013; 139:074303. [PMID: 23968088 DOI: 10.1063/1.4818277] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The intermolecular interaction of free-base porphine (FBP)-Ar2 and free-base tetraazaporphyrin (FBPz)-Ar2 van der Waals (vdW) complexes was calculated in the ground state and vertical excitations that correspond to the Q- and B-bands using the many-body wavefunction theory of the symmetry-adapted cluster-configuration interaction (SAC-CI) method and time-dependent density functional theory (TDDFT). For the 1(1)B3u state of FBP-Ar2 a blueshift (high-energy shift) of excitation energy was calculated using the SAC-CI method; such a blueshift was not obtained by TDDFT calculations. This calculated blueshift corresponds to the experimentally observed blueshift in the Qx-band of FBP for FBP-Arn complexes. For FBPz-Ar2, blueshifts of the Q-band were not obtained using SAC-CI and TDDFT. These behaviors of the energy shift of the Q-bands could not be explained by the point dipole-point dipole interaction model. Large redshifts (low-energy shift) were obtained for the B-band states (2(1)B3u and 2(1)B2u) of FBP and FBPz. The energy shift showed the inverse sixth-power dependence on the intermolecular distance. The point dipole-point dipole interaction model can describe the redshift of the B-band. For the excited states that exhibit large redshifts, the TDDFT can qualitatively describe the vdW interaction in the excited states by supermolecular calculations. The solvatochromic shifts for FBP and FBPz in an Ar matrix were examined by the linear-response polarizable continuum model and TDDFT. The magnitude of calculated solvatochromic redshifts is proportional to the square of the transition dipole moment.
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Affiliation(s)
- Ryoichi Fukuda
- Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki 444-8585, Japan.
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38
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39
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Munteanu CR, Henriksen C, Felker PM, Fernández B. He-, Ne-, and Ar-phosgene intermolecular potential energy surfaces. J Phys Chem A 2013; 117:3835-43. [PMID: 23617631 DOI: 10.1021/jp3110024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Using the CCSD(T) model, we evaluated the intermolecular potential energy surfaces of the He-, Ne-, and Ar-phosgene complexes. We considered a representative number of intermolecular geometries for which we calculated the corresponding interaction energies with the augmented (He complex) and double augmented (Ne and Ar complexes) correlation-consistent polarized valence triple-ζ basis sets extended with a set of 3s3p2d1f1g midbond functions. These basis sets were selected after systematic basis set studies carried out at geometries close to those of the surface minima. The He-, Ne-, and Ar-phosgene surfaces were found to have absolute minima of -72.1, -140.4, and -326.6 cm(-1) at distances between the rare-gas atom and the phosgene center of mass of 3.184, 3.254, and 3.516 Å, respectively. The potentials were further used in the evaluation of rovibrational states and the rotational constants of the complexes, providing valuable results for future experimental investigations. Comparing our results to those previously available for other phosgene complexes, we suggest that the results for Cl2-phosgene should be revised.
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40
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Hjertenæs E, Andersson S, Koch H. Assessment of density functionals for van der Waals complexes of sodium and benzene. Mol Phys 2013. [DOI: 10.1080/00268976.2013.794982] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Eirik Hjertenæs
- a Department of Chemistry , Norwegian University of Science and Technology , Trondheim , 7491 , Norway
| | - Stefan Andersson
- b SINTEF Materials and Chemistry , P.O. Box 4760, Trondheim , 7465 , Norway
| | - Henrik Koch
- a Department of Chemistry , Norwegian University of Science and Technology , Trondheim , 7491 , Norway
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Dagdigian PJ, Alexander MH. Theoretical study of the vibrational relaxation of the methyl radical in collisions with helium. J Chem Phys 2013; 138:104317. [DOI: 10.1063/1.4794167] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Bryantsev VS. Predicting the stability of aprotic solvents in Li-air batteries: pKa calculations of aliphatic C–H acids in dimethyl sulfoxide. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2012.12.066] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Platts JA, Hill JG, Riley KE, Řezáč J, Hobza P. Basis Set Dependence of Interaction Energies Computed Using Composite Post-MP2 Methods. J Chem Theory Comput 2012; 9:330-7. [DOI: 10.1021/ct300842d] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James A. Platts
- School of Chemistry, Cardiff University, Park Place, Cardiff CF10 3AT, United
Kingdom
| | - J. Grant Hill
- School of Chemistry, University of Glasgow, Joseph Black Building, University
Ave, Glasgow, G12 8QQ, United Kingdom
| | - Kevin E. Riley
- Department of Chemistry, Xavier University of Louisiana, 1 Drexel Drive, Box
22, New Orleans, Louisiana 70125, United States
| | - Jan Řezáč
- Institute of Organic Chemistry
and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, 166 10 Prague, Czech Republic
| | - Pavel Hobza
- Institute of Organic Chemistry
and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, 166 10 Prague, Czech Republic
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Farrokhpour H, Tozihi M. Ab initio intermolecular potential energy surfaces of He–CS2, Ne–CS2 and Ar–CS2 complexes. Mol Phys 2012. [DOI: 10.1080/00268976.2012.745630] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- H. Farrokhpour
- a Chemistry Department , Isfahan University of Technology , Isfahan 84156-83111 , Iran
| | - M. Tozihi
- a Chemistry Department , Isfahan University of Technology , Isfahan 84156-83111 , Iran
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Tscherbul TV, Grinev TA, Yu HG, Dalgarno A, Kłos J, Alexander MH. Cold collisions of polyatomic molecular radicals with S-state atoms in a magnetic field: An ab initio study of He + CH 2(X̃) collisions. J Chem Phys 2012; 137:104302. [DOI: 10.1063/1.4748258] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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47
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Cybulski H, Fernández B, Henriksen C, Felker PM. Ab initio ground state phenylacetylene–argon intermolecular potential energy surface and rovibrational spectrum. J Chem Phys 2012; 137:074305. [DOI: 10.1063/1.4742153] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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48
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Gubbels KB, Ma Q, Alexander MH, Dagdigian PJ, Tanis D, Groenenboom GC, van der Avoird A, van de Meerakker SYT. Resonances in rotationally inelastic scattering of OH(X2Π) with helium and neon. J Chem Phys 2012; 136:144308. [PMID: 22502519 DOI: 10.1063/1.3697816] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present detailed calculations on resonances in rotationally and spin-orbit inelastic scattering of OH (X(2)Π, j = 3/2, F(1), f) radicals with He and Ne atoms. We calculate new ab initio potential energy surfaces for OH-He, and the cross sections derived from these surfaces compare well with the recent crossed beam scattering experiment of Kirste et al. [Phys. Rev. A 82, 042717 (2010)]. We identify both shape and Feshbach resonances in the integral and differential state-to-state scattering cross sections, and we discuss the prospects for experimentally observing scattering resonances using Stark decelerated beams of OH radicals.
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Affiliation(s)
- Koos B Gubbels
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany.
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Dagdigian PJ, Alexander MH. Theoretical investigation of rotationally inelastic collisions of CH2(X̃) with helium. J Chem Phys 2012; 136:224306. [DOI: 10.1063/1.4729050] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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50
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Gubbels KB, Meerakker SYTVD, Groenenboom GC, Meijer G, Avoird AVD. Scattering resonances in slow NH3–He collisions. J Chem Phys 2012; 136:074301. [DOI: 10.1063/1.3683219] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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