Photodissociation of N-methylformamide isolated in solid parahydrogen

Studies on the Thermal Decomposition Course of Nitrogen-Rich Heterocyclic Esters as Potential Drug Candidates and Evaluation of Their Thermal Stability and Properties

Drug candidates must undergo thermal evaluation as early as possible in the preclinical phase of drug development because undesirable changes in their structure and physicochemical properties may result in decreased pharmacological activity or enhanced toxicity. Hence, the detailed evaluation of nitrogen-rich heterocyclic esters as potential drug candidates, i.e., imidazolidinoannelated triazinylformic acid ethyl esters 1-3 (where R1 = 4-CH3 or 4-OCH3 or 4-Cl, and R2 = -COOC2H5) and imidazolidinoannelated triazinylacetic acid methyl esters 4-6 (where R1 = 4-CH3 or 4-OCH3 or 4-Cl, and R2 = -CH2COOCH3)-in terms of their melting points, melting enthalpy values, thermal stabilities, pyrolysis, and oxidative decomposition course-has been carried out, using the simultaneous thermal analysis methods (TG/DTG/DSC) coupled with spectroscopic techniques (FTIR and QMS). It was found that the melting process (documented as one sharp peak related to the solid-liquid phase transition) of the investigated esters proceeded without their thermal decomposition. It was confirmed that the melting points of the tested compounds increased in relation to R1 and R2 as follows: 2 (R1 = 4-OCH3; R2 = -COOC2H5) < 6 (R1 = 4-Cl; R2 = -CH2COOCH3) < 5 (R1 = 4-OCH3; R2 = -CH2COOCH3) < 3 (R1 = 4-Cl; R2 = -COOC2H5) < 1 (R1 = 4-CH3; R2 = -COOC2H5) < 4 (R1 = 4-CH3; R2 = -CH2COOCH3). All polynitrogenated heterocyclic esters proved to be thermally stable up to 250 °C in inert and oxidising conditions, although 1-3 were characterised by higher thermal stability compared to 4-6. The results confirmed that both the pyrolysis and the oxidative decomposition of heterocyclic ethyl formates/methyl acetates with para-substitutions at the phenyl moiety proceed according to the radical mechanism. In inert conditions, the pyrolysis process of the studied molecules occurred with the homolytic breaking of the C-C, C-N, and C-O bonds. This led to the emission of alcohol (ethanol in the case of 1-3 or methanol in the case of 4-6), NH3, HCN, HNCO, aldehydes, CO2, CH4, HCl, aromatics, and H2O. In turn, in the presence of air, cleavage of the C-C, C-N, and C-O bonds connected with some oxidation and combustion processes took place. This led to the emission of the corresponding alcohol depending on the analysed class of heterocyclic esters, NH3, HCN, HNCO, aldehydes, N2, NO/NO2, CO, CO2, HCl, aromatics, and H2O. Additionally, after some biological tests, it was proven that all nitrogen-rich heterocyclic esters-as potential drug candidates-are safe for erythrocytes, and some of them are able to protect red blood cells from oxidative stress-induced damage.

UV photolysis of thiourea and its N-methylated derivative in cryogenic matrices

Exploration of the photolytic dynamics of sulfurous compounds is essential, eventually contributing not only to our comprehension of their fundamental organic chemistry but also shedding light on astrophysical implications. This study aims to investigate two astrochemically relevant sulfur-containing molecules, namely, thiourea (TU) and its N-methylated counterpart, N-methyl thiourea (NMTU), in cryogenic matrices. These molecules were deposited both in solid Ar and in a quantum host, specifically in solid para-H2 matrices, with the latter exhibiting unique properties. The deposited matrices were exposed to a series of UV laser irradiation at various wavelengths to investigate the decomposition paths of TU and NMTU. As a result of the UV photolysis, a plethora of degradation products could be observed in every case. Based on the presence of these product molecules, some considerations can be made regarding the decomposition mechanism of the parent molecules. The use of different matrices allowed for assessing their influence on the decay mechanism, while applying tunable laser light provided insights into the wavelength dependency of the processes.

UV Laser-Induced Photodecomposition of Matrix-Isolated Salicylhydroxamic Acid: Identification of New Isocyanate Complexes

Photochemical reactions of salicylhydroxamic acid were induced using tunable UV laser radiation followed by FTIR spectroscopy. Four pairs of co-products were experimentally found to appear in the photolysis: C6H4(OH)NCO⋯H2O (1), C6H4(OH)C(O)N⋯H2O (2), C6H4(OH)2⋯HNCO (3), and C6H4(OH)NHOH⋯CO (4). The comparison of the theoretical spectra with the experimental ones allowed us to determine the structures of the complexes formed in the matrices. The mechanisms of the reaction channels leading to the formation of the photoproducts were proposed. It was concluded that the first step in the formation of the complexes (1), (2), and (3) was the scission of the N-O bond, whereas the creation of complex (4) was due to cleavage of the C-N bond.

Energetic processing of thioacetamide in cryogenic matrices

There is an ongoing debate on the apparent depletion of sulfur in the interstellar medium (ISM) compared to its universal abundance; therefore, the investigation of sulfurous compounds at low temperatures is of utmost importance. This work aims to study thioacetamide, H3C-C(=S)-NH2, in low-temperature inert Ar and para-H2 matrices by IR spectroscopy. The samples have been exposed to various sources of irradiation, such as Lyman-α or laser UV photons as well as energetic electrons. Using different host materials enabled assessing the matrix's impact on precursor decomposition. The response of the molecule to different types of irradiation has also been evaluated. The existence of three main decomposition channels were deduced: formation of (i) CH3, CH4, and HNCS; (ii) H2S and H2C=C=NH; and (iii) NH3 and H2C=C=S. The H3C-CN and H3C-NC isomers of H2C=C=NH could also be identified. Secondary products such as HNC and HCN were also detected in the quantum solid para-H2 in contrast to the more rigid Ar matrix. The listed decomposition products have been observed in the ISM, with the exception of H2C=C=NH and H3C-NC. The results point to the potential sensitivity of the precursor molecule to energetic radiation in space environments. Finally, the findings of this work will serve as a foundation for future irradiation experiments using the astrochemically more relevant pure thioacetamide ice.

Ultraviolet Photodissociation of Proteinogenic Amino Acids

The ultraviolet photochemistry of the amino acids glycine, leucine, proline, and serine in their neutral forms was investigated using parahydrogen matrix-isolation spectroscopy. Irradiation by 213 nm light destroys the chirality of all three chiral amino acids as a result of the α-carbonyl C-C bond cleavage and hydrocarboxyl (HOCO) radical production. The temporal behavior of the Fourier-transform infrared spectra revealed that HOCO radicals rapidly reach a steady state, which occurs predominantly due to photodissociation of HOCO into CO + OH or CO₂ + H. In glycine and leucine, the amine radicals generated by the α-carbonyl C-C bond cleavage rapidly undergo hydrogen elimination to yield methanimine and 3-methylbutane-1-imine, respectively. Breaking of the α-carbonyl C-C bond in proline appeared to yield 1-pyrroline, although due to its weak absorption it remains unconfirmed. In serine, additional products were formaldehyde and E/Z ethanimine. The present study shows that the direct production of HOCO previously observed in α-alanine generalizes to other amino acids of varying structure. It also revealed a tendency for amino acid photolysis to form imines rather than amine radicals. HOCO should be useful in the search for amino acids in interstellar space, particularly in combination with simple imine molecules.

Infrared and Laser-Induced Fluorescence Spectra of Sumanene Isolated in Solid para-Hydrogen

The para-hydrogen (p-H₂) matrix-isolation technique has been scarcely used to record electronic absorption and emission spectra. It is expected that its small matrix shifts due to diminished molecular interactions and the softness of the lattice might be advantageous to help identify the carriers of the diffuse interstellar bands. In this article, we present infrared, fluorescence excitation, and dispersed fluorescence spectra of sumanene (C₂₁H₁₂), a bowl-shaped polycyclic aromatic hydrocarbon and a fragment of C₆₀, isolated in solid p-H₂. The recorded vibrational wavenumbers from infrared and dispersed fluorescence agree with the scaled harmonic vibrational wavenumbers calculated with the B3PW91/6-311++G(2d,2p) and B3LYP/6-311++G(2d,2p) methods. The recorded fluorescence excitation spectra are consistent with the spectra of jet-cooled gas-phase C₂₁H₁₂ reported previously by Kunishige et al. We found a rather small matrix shift of 55 cm^-1 for the S₁-S₀ electronic transition origin located at 27 888 cm^-1. Vibrational wavenumbers associated with the S₁ state of C₂₁H₁₂ inferred from the experimental spectrum can be assigned mostly to fundamental normal modes; they are in satisfactory agreement with scaled harmonic vibrational wavenumbers calculated at the TD-B3PW91/6-311++G(2d,2p) level of theory. Significantly more vibrational modes of the S₁ state were identified as compared with those in the reported gas-phase work. The potential of p-H₂ matrix-isolation spectroscopy to provide electronic excitation spectra suitable for comparison to astronomical observations is discussed by comparing the spectra of C₂₁H₁₂ isolated in solid p-H₂ and in solid Ne, a matrix host commonly employed in astrochemistry.

Hydrogen-Atom-Assisted Uphill Isomerization of N-Methylformamide in Darkness

N-Methylformamide, HC(O)NH(CH₃), is the smallest amide detected in the interstellar medium that can exist as cis and trans isomers. We performed reactions of H atoms with trans-NMF in solid para-hydrogen at 3.3 K and found that the cis-NMF isomer, which has higher energy, increased continuously in darkness, demonstrating a previously overlooked and seemingly unlikely isomerization of prebiotic molecules through H-atom tunneling reactions in the absence of light. Infrared spectra of radical intermediates trans-•C(O)NH(CH₃) and trans-HC(O)NH(•CH₂) were identified. Further H addition and H abstraction enhanced the formation of CH₃NCO, HNCO, and CH₂NH in the H-rich experiments. These results indicate that, unlike the dual cycle of H-abstraction and H-addition channels chemically linking formamide and HNCO, the H addition to CH₃NCO produced only cis-radicals that led to cis-NMF. Furthermore, H-atom-induced fragmentation by breaking the C-C bond provides links between NMF and HCNO/CH₂NH. These endothermic isomerization/decomposition reactions become possible through the coupling with H + H → H₂.

A chemical link between methylamine and methylene imine and implications for interstellar glycine formation

Methylamine CH₃NH₂ is considered to be an important precursor of interstellar amino acid because hydrogen abstraction might lead to the aminomethyl radical •CH₂NH₂ that can react with •HOCO to form glycine, but direct evidence of the formation and spectral identification of •CH₂NH₂ remains unreported. We performed the reaction H + CH₃NH₂ in solid p-H₂ at 3.2 K and observed IR spectra of •CH₂NH₂ and CH₂NH upon irradiation and when the matrix was maintained in darkness. Previously unidentified IR spectrum of •CH₂NH₂ clearly indicates that •CH₂NH₂ can be formed from the reaction H + CH₃NH₂ in dark interstellar clouds. The observed dual-cycle mechanism containing two consecutive H-abstraction and two H-addition steps chemically connects CH₃NH₂ and CH₂NH in interstellar media and explains their quasi-equilibrium. Experiments on CD₃NH₂ produced CD₂HNH₂, in addition to •CD₂NH₂ and CD₂NH, confirming the occurrence of H addition to •CD₂NH₂.

Hydrogen atom quantum diffusion in solid parahydrogen: The H + N2O → cis-HNNO → trans-HNNO reaction

The diffusion and reactivity of hydrogen atoms in solid parahydrogen at temperatures between 1.5 K and 4.3 K are investigated by high-resolution infrared spectroscopy. Hydrogen atoms are produced within solid parahydrogen as the by-products of the 193 nm in situ photolysis of N₂O, which induces a two-step tunneling reaction, H + N₂O → cis-HNNO → trans-HNNO. The second-order rate constant for the first step to form cis-HNNO is found to be inversely proportional to the N₂O concentration after photolysis, indicating that the hydrogen atoms move through solid parahydrogen via quantum diffusion. This reaction only readily occurs at temperatures below 2.8 K, not due to an increased rate constant for the first reaction step at low temperatures but rather due to an increased selectivity to the reaction. The rate constant for the second step of the reaction mechanism involving unimolecular isomerization is shown to be independent of the N₂O concentration as expected. The inverse concentration dependence of the rate constant for the reaction step that involves the hydrogen atom demonstrates clearly that quantum diffusion influences the reactivity of the hydrogen atoms in solid parahydrogen, which does not have an analogy in classical reaction kinetics.

Infrared spectrum of hydrogenated corannulene rim-HC20H10 isolated in solid para-hydrogen

Hydrogenated polycyclic aromatic hydrocarbons have been proposed to be carriers of the interstellar unidentified infrared (UIR) emission bands and the catalysts for formation of H₂; spectral characterizations of these species are hence important. We report the infrared (IR) spectrum of mono-hydrogenated corannulene (HC₂₀H₁₀) in solid para-hydrogen (p-H₂). In experiments of electron bombardment of a mixture of corannulene and p-H₂ during deposition of a matrix at 3.2 K, two groups of spectral lines increased with time during maintenance of the matrix in darkness after deposition. Lines in one group were assigned to the most stable isomer of hydrogenated corannulene, rim-HC₂₀H₁₀, according to the expected chemistry and a comparison with scaled harmonic vibrational wavenumbers and IR intensities predicted with the B3PW91/6-311++G(2d,2p) method. The lines in the other group do not agree with predicted spectra of other HC₂₀H₁₀ isomers and remain unassigned. Alternative hydrogenation was achieved with H atoms produced photochemically in the infrared-induced reaction Cl + H₂ (v = 1) → H + HCl in a Cl₂/C₂₀H₁₀/p-H₂ matrix. With this method, only lines attributable to rim-HC₂₀H₁₀ were observed, indicating that hydrogenation via a quantum-mechanical tunneling mechanism produces preferably the least-energy rim-HC₂₀H₁₀ regardless of similar barrier heights and widths for the formation of rim-HC₂₀H₁₀ and hub-HC₂₀H₁₀. The mechanisms of formation in both experiments are discussed. The bands near 3.3 and 3.4 µm of rim-HC₂₀H₁₀ agree with the UIR emission bands in position and relative intensity, but other bands do not match satisfactorily with the UIR bands.

Formation and infrared identification of protonated fluoranthene isomers 3-, 9-, and 10-C16H11+ in solid para-H2

Polycyclic aromatic hydrocarbons (PAH) and their derivatives are prospective carriers of unidentified infrared (UIR) emission features observed in interstellar media. Fluoranthene (C16H10) is a simple planar PAH with five- and six-membered rings; it can be considered as a fragment of C60, which, along with its cationic counterpart, has been identified in interstellar media. Protonated fluoranthene, C16H11+, was generated upon electron bombardment during deposition at 3.2 K of p-H2 containing fluoranthene in a small proportion. The intensities of infrared features of C16H11+ decreased after maintaining the matrix in darkness because of its neutralization with trapped electrons. According to the correlations in intensities upon neutralization and secondary photolysis, observed lines were classified into three groups which are assigned to isomers 3-C16H11+, 9-C16H11+, and 10-C16H11+. Experimental vibrational wavenumbers and relative IR intensities of the features agree with corresponding calculated values predicted for these three isomers of C16H11+ with the B3PW91/6-311++G(2d,2p) method. 3-C16H11+ and 9-C16H11+ are predicted to have the lowest energy (within 5 kJ mol-1), whereas 10- and 1-C16H11+ are lying above the global minimum 3-C16H11+ by ∼20 kJ mol-1. However, definitive identification of 1-C16H11+ could not be made as only the most intense line is tentatively assigned. Although the observed spectra of these isomers match unsatisfactorily with the UIR bands, they will facilitate the potential terrestrial and extraterrestrial identification of these species.

Infrared spectra of 3-hydroxy-(1H)-pyridinium cation and 3-hydroxy-(1H)-pyridinyl radical isolated in solid para-hydrogen

As pyridine and its derivatives are regarded as building blocks of nitrogen-containing polycyclic aromatic hydrocarbons, spectral identifications of their protonated and hydrogenated species are important. The infrared (IR) absorption spectra of the 3-hydroxy-(1H)-pyridinium cation, 3-C₅H₄(OH)NH⁺, and the 3-hydroxy-(1H)-pyridinyl radical, 3-C₅H₄(OH)NH, produced on electron bombardment during deposition of a mixture of 3-hydroxypyridine, 3-C₅H₄(OH)N, and para-H₂ to form a matrix at 3.2 K were recorded. Intense IR absorption lines of trans-3-C₅H₄(OH)NH⁺ at 3594.4, 3380.0, 1610.6, 1562.2, 1319.4, 1193.8, 1167.5, and 780.4 cm^-1 and eleven weaker ones decreased in intensity after the matrix was maintained in darkness for 20 h, whereas lines of trans-3-C₅H₄(OH)NH at 3646.2, 3493.4, 3488.7, 1546.7, 1349.6, 1244.1, 1209.1, 1177.3, 979.8, and 685.2 cm^-1 and nine weaker ones increased. The intensities of lines of trans-3-C₅H₄(OH)NH decreased upon irradiation at 520 nm and diminished nearly completely upon irradiation at 450 nm, whereas those of trans-3-C₅H₄(OH)NH⁺ remained unchanged upon irradiation at 370, 450, and 520 nm. Observed vibrational wavenumbers and relative intensities of these species agree satisfactorily with the scaled harmonic vibrational wavenumbers and IR intensities predicted with the B3LYP/aug-cc-pVTZ method. The observed 3-C₅H₄(OH)NH⁺ cation and 3-C₅H₄(OH)NH radical are predicted to be the most stable species among all possible isomers by quantum-chemical calculations.

Solid Parahydrogen Infrared Matrix Isolation and Computational Studies of Lin-(C2H4)m Complexes

Complexes of lithium atoms with ethylene have been identified as potential hydrogen storage materials. As a Li atom approaches an ethylene molecule, two distinct low-lying electronic states are established; one is the ²A₁ electronic state (for C_2v geometries) that is repulsive but supports a shallow van der Waals well and correlates with the Li 2s atomic state, and the second is a ²B₂ electronic state that correlates with the Li 2p atomic orbital and is a strongly bound charge-transfer state. Only the ²B₂ charge-transfer state would be advantageous for hydrogen storage because the strong electric dipole created in the Li-(C₂H₄) complex due to charge transfer can bind molecular hydrogen through dipole-induced dipole and dipole-quadrupole electrostatic interactions. Ab initio studies have produced conflicting results for which electronic state is the true ground state for the Li-(C₂H₄) complex. The most accurate ab initio calculations indicate that the ²A₁ van der Waals state is slightly more stable. In contrast, argon matrix isolation experiments have clearly identified the Li-(C₂H₄) complex exists in the ²B₂ state. Some have suggested that argon matrix effects shift the equilibrium toward the ²B₂ state. We report the low-temperature synthesis and IR characterization of Li_n-(C₂H₄)_m (n = 1, m = 1 and 2) complexes in solid parahydrogen which are observed using the C═C stretching vibration of ethylene in the complex. These results show that under cryogenic hydrogen storage conditions the Li-(C₂H₄) complex is more stable in the ²B₂ electronic state and thus constitutes a potential hydrogen storage material with desirable characteristics.

Photochemistry of Acetohydroxamic Acid in Solid Argon. FTIR and Theoretical Studies

The products formed during exposure of the CH₃CONHOH/Ar (AHA/Ar) matrices to the full output of the Xe lamp and to 225 nm OPO radiation are studied. The irradiation promotes the isomerization, 1Z → 1E, and AHA photodissociation reactions. Four pairs of coproducts are experimentally found to appear in the photolysis, they form the complexes: CH₃OH···HNCO (1), H₂O···CH₃NCO (2), H₂O···CH₃CNO (3) and CO···CH₃NHOH (4). The structures of the complexes were optimized at the MP2 computational level with the 6-311++G(2d,2p) and aug-cc-pVTZ basis sets. Three local minima were predicted for the complex (1), two for the complexes (2) and (3) and four local minima were found for the complex (4). The comparison of the theoretical spectra with the experimental ones allowed us to determine the structures of the complexes formed in the matrix. The mechanisms of the reaction channels leading to formation of the four coproducts are proposed. It is concluded that the first step in formation of the (1), (2) and (3) complexes is the scission of the N-O bond whereas the creation of the complex (4) is due to the cleavage of the C-N bond.

Photo-stability of peptide-bond aggregates: N-methylformamide dimers

The formation of weakly-bound dimers of N-methylformamide (NMF) and the photochemistry of these dimers after irradiation at 248 nm were explored using matrix-isolation spectroscopy. Calculations were used to characterize the diverse isomers and assign their IR spectra; non-adiabatic dynamics was simulated to understand their photo-deactivation mechanism. The most stable dimers, and , were obtained by trans-trans aggregation (N-HO[double bond, length as m-dash]C interactions) and could be identified in the matrix. The main products formed after irradiation are the trans-cis dimers ( and ), also stabilized by N-HO[double bond, length as m-dash]C interactions. In contrast to the photochemistry of the monomers, no dissociative products were observed after 248 nm irradiation of the dimers. The absence of dissociative products can be explained by a proton-transfer mechanism in the excited state that is faster than the photo-dissociative mechanism. The fact that hydrogen bonding has such a significant effect on the photochemical stability of NMF has important implications to understand the stability of peptide-bonded systems to UV irradiation.