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For: Jing Y, Chen L, Bai S, Shi Q. Equilibrium excited state and emission spectra of molecular aggregates from the hierarchical equations of motion approach. J Chem Phys 2013;138:045101. [DOI: 10.1063/1.4775843] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
Number Cited by Other Article(s)
1
Huang C, Bai S, Shi Q. Simulation of the Pump-Probe Spectra and Excitation Energy Relaxation of the B850 Band of the LH2 Complex in Purple Bacteria. J Phys Chem B 2024. [PMID: 39059418 DOI: 10.1021/acs.jpcb.4c02059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2024]
2
Xing T, Li T, Yan Y, Bai S, Shi Q. Application of the imaginary time hierarchical equations of motion method to calculate real time correlation functions. J Chem Phys 2022;156:244102. [DOI: 10.1063/5.0095790] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
3
Braver Y, Valkunas L, Gelzinis A. Stark absorption and Stark fluorescence spectroscopies: Theory and simulations. J Chem Phys 2021;155:244101. [PMID: 34972359 DOI: 10.1063/5.0073962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
4
Braver Y, Valkunas L, Gelzinis A. Quantum-Classical Approach for Calculations of Absorption and Fluorescence: Principles and Applications. J Chem Theory Comput 2021;17:7157-7168. [PMID: 34618457 PMCID: PMC8719324 DOI: 10.1021/acs.jctc.1c00777] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Indexed: 01/20/2023]
5
Seibt J, Kühn O. Strong Exciton-Vibrational Coupling in Molecular Assemblies. Dynamics Using the Polaron Transformation in HEOM Space. J Phys Chem A 2021;125:7052-7065. [PMID: 34353023 DOI: 10.1021/acs.jpca.1c02684] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
6
Yan Y, Liu Y, Xing T, Shi Q. Theoretical study of excitation energy transfer and nonlinear spectroscopy of photosynthetic light‐harvesting complexes using the nonperturbative reduced dynamics method. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1498] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
7
Simulations of absorption and fluorescence lineshapes using the reaction coordinate method. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.05.030] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
8
Leng X, Yan YM, Zhu RD, Song K, Weng YX, Shi Q. Simulation of the Two-Dimensional Electronic Spectroscopy and Energy Transfer Dynamics of Light-Harvesting Complex II at Ambient Temperature. J Phys Chem B 2018;122:4642-4652. [DOI: 10.1021/acs.jpcb.8b00674] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
9
Ye L, Zhang HD, Wang Y, Zheng X, Yan Y. Low-frequency logarithmic discretization of the reservoir spectrum for improving the efficiency of hierarchical equations of motion approach. J Chem Phys 2017;147:074111. [DOI: 10.1063/1.4999027] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
10
Zhang HD, Qiao Q, Xu RX, Zheng X, Yan Y. Efficient steady-state solver for hierarchical quantum master equations. J Chem Phys 2017;147:044105. [DOI: 10.1063/1.4995424] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
11
Ke Y, Zhao Y. An extension of stochastic hierarchy equations of motion for the equilibrium correlation functions. J Chem Phys 2017;146:214105. [PMID: 28576086 PMCID: PMC5453806 DOI: 10.1063/1.4984260] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Accepted: 05/16/2017] [Indexed: 11/14/2022]  Open
12
Xu M, Song L, Song K, Shi Q. Convergence of high order perturbative expansions in open system quantum dynamics. J Chem Phys 2017;146:064102. [DOI: 10.1063/1.4974926] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
13
Chenu A, Cao J. Construction of Multichromophoric Spectra from Monomer Data: Applications to Resonant Energy Transfer. PHYSICAL REVIEW LETTERS 2017;118:013001. [PMID: 28106411 DOI: 10.1103/physrevlett.118.013001] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Indexed: 06/06/2023]
14
Effects of finite laser pulse width on two-dimensional electronic spectroscopy. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2016.11.030] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
15
Song K, Bai S, Shi Q. Effect of Pulse Shaping on Observing Coherent Energy Transfer in Single Light-Harvesting Complexes. J Phys Chem B 2016;120:11637-11643. [PMID: 27749066 DOI: 10.1021/acs.jpcb.6b07025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
16
Song L, Shi Q. Calculation of correlated initial state in the hierarchical equations of motion method using an imaginary time path integral approach. J Chem Phys 2015;143:194106. [DOI: 10.1063/1.4935799] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
17
Jing YY, Song K, Bai SM, Shi Q. Linear and Nonlinear Spectra in Photosynthetic Light Harvesting Complexes: Benchmark Tests of Modified Redfield Method. CHINESE J CHEM PHYS 2015. [DOI: 10.1063/1674-0068/28/cjcp1506126] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
18
Yeh SH, Kais S. Simulated two-dimensional electronic spectroscopy of the eight-bacteriochlorophyll FMO complex. J Chem Phys 2015;141:234105. [PMID: 25527917 DOI: 10.1063/1.4903546] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
19
Ma J, Cao J. Förster resonance energy transfer, absorption and emission spectra in multichromophoric systems. I. Full cumulant expansions and system-bath entanglement. J Chem Phys 2015;142:094106. [PMID: 25747060 DOI: 10.1063/1.4908599] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
20
Moix JM, Ma J, Cao J. Förster resonance energy transfer, absorption and emission spectra in multichromophoric systems. III. Exact stochastic path integral evaluation. J Chem Phys 2015;142:094108. [PMID: 25747062 DOI: 10.1063/1.4908601] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
21
Song L, Shi Q. A new approach to calculate charge carrier transport mobility in organic molecular crystals from imaginary time path integral simulations. J Chem Phys 2015;142:174103. [DOI: 10.1063/1.4919061] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
22
Ma J, Moix J, Cao J. Förster resonance energy transfer, absorption and emission spectra in multichromophoric systems. II. Hybrid cumulant expansion. J Chem Phys 2015;142:094107. [PMID: 25747061 DOI: 10.1063/1.4908600] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
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