Theoretical study of interactions of BSA protein in a NaCl aqueous solution

Effects of flexibility in coarse-grained models for bovine serum albumin and immunoglobulin G

We construct a coarse-grained, structure-based, low-resolution, 6-bead flexible model of bovine serum albumin (BSA, PDB: 4F5S), which is a popular example of a globular protein in biophysical research. The model is obtained via direct Boltzmann inversion using all-atom simulations of a single molecule, and its particular form is selected from a large pool of 6-bead coarse-grained models using two suitable metrics that quantify the agreement in the distribution of collective coordinates between all-atom and coarse-grained Brownian dynamics simulations of solutions in the dilute limit. For immunoglobulin G (IgG), a similar structure-based 12-bead model has been introduced in the literature [Chaudhri et al., J. Phys. Chem. B 116, 8045 (2012)] and is employed here to compare findings for the compact BSA molecule and the more anisotropic IgG molecule. We define several modified coarse-grained models of BSA and IgG, which differ in their internal constraints and thus account for a variation of flexibility. We study denser solutions of the coarse-grained models with purely repulsive molecules (achievable by suitable salt conditions) and address the effect of packing and flexibility on dynamic and static behavior. Translational and rotational self-diffusivity is enhanced for more elastic models. Finally, we discuss a number of effective sphere sizes for the BSA molecule, which can be defined from its static and dynamic properties. Here, it is found that the effective sphere diameters lie between 4.9 and 6.1 nm, corresponding to a relative spread of about ±10% around a mean of 5.5 nm.

Data-driven approximations to the bridge function yield improved closures for the Ornstein-Zernike equation

A key challenge for soft materials design and coarse-graining simulations is determining interaction potentials between components that give rise to desired condensed-phase structures. In theory, the Ornstein-Zernike equation provides an elegant framework for solving this inverse problem. Pioneering work in liquid state theory derived analytical closures for the framework. However, these analytical closures are approximations, valid only for specific classes of interaction potentials. In this work, we combine the physics of liquid state theory with machine learning to infer a closure directly from simulation data. The resulting closure is more accurate than commonly used closures across a broad range of interaction potentials.

Salting Up and Salting Down of Bovine Serum Albumin Layers at the Air-Water Interface

The surface adsorption of bovine serum albumin in pure water and salted aqueous solutions was studied by neutron reflection. With the contrast match technique, the surface excess in null reflecting water as a function of the protein concentration was revealed. It is found that, in a concentration range from 1 ppm (parts per million, mg/L) to 1000 ppm, without salts, the surface excess shows a profound peak at around 20 ppm; with salts, the surface excess increases steadily with the protein concentration. When the surface excess at a specific protein concentration is viewed, the introduction of sodium chloride causes either a salting down effect (surface adsorption decline) or a salting up effect (surface adsorption increase), depending upon the protein concentration. The salting up effect is observed at the low (∼1 ppm) and high (∼1000 ppm) concentrations, and the salting down effect dominates the intermediate concentration range. The change in solution pH relative to the isoelectric point (PI) can act as a simple indicator for the salting up or salting down behavior. When the solution pH is shifted toward the PI by adding salts, surface adsorption enhances; when the solution pH is shifted away from the PI by adding salts, surface adsorption declines.

Concentrated protein solutions investigated using acoustic levitation and small-angle X-ray scattering

An acoustically levitated droplet has been used to collect synchrotron SAXS data on human serum albumin protein solutions up to a protein concentration of 400 mg ml^-1. A careful selection of experiments allows for fast data collection of a large amount of data, spanning a protein concentration/solvent concentration space with limited sample consumption (down to 3 µL per experiment) and few measurements. The data analysis shows data of high quality that are reproducible and comparable with data from standard flow-through capillary-based experiments. Furthermore, using this methodology, it is possible to achieve concentrations that would not be accessible by conventional cells. The protein concentration and ionic strength parameter space diagram may be covered easily and the amount of protein sample is significantly reduced (by a factor of 100 in this work). Used in routine measurements, the benefits in terms of protein cost and time spent are very significant.

The effect of a trimetallic nanocomposite in the solar absorber layer of organic solar cells

Bulk heterojunction (BHJ) organic solar cells were fabricated using a trimetallic nanocomposite (Ag : Zn : Ni) in the photoactive layer. The incorporation of the nanocomposite was limited to the concentrations of 4% and 6% by volume into poly(3-hexylthiophene) (P3HT) and 6-6-phenyl-C₆₁-butyric acid methyl ester (PCBM) blend solar absorber. The newly fabricated devices were investigated in terms of the optical, electrical and morphological properties of the photoactive medium. The power conversion efficiencies (PCE) of the solar cells were found to be increased by 57% and 84% due to improved harvesting of solar radiation due to the occurrence of localized surface plasmon resonance (LSPR) effects of the metal nanocomposite. Silver : zinc : nickel (Ag : Zn : Ni) tri-metallic nanocomposites were synthesized using a chemical reduction method from silver, zinc and nickel nitrates. The nanocomposites were characterized in terms of morphology, elemental composition and crystallinity which are extensively discussed in the manuscript.

Bulk heterojunction (BHJ) organic solar cells were fabricated using a trimetallic nanocomposite (Ag : Zn : Ni) in the photoactive layer.

Self-Interaction of Human Serum Albumin: A Formulation Perspective

In the present study, small-angle X-ray scattering (SAXS) and static light scattering (SLS) have been used to study the solution properties and self-interaction of recombinant human serum albumin (rHSA) molecules in three pharmaceutically relevant buffer systems. Measurements are carried out up to high protein concentrations and as a function of ionic strength by adding sodium chloride to probe the role of electrostatic interactions. The effective structure factors (S _eff) as a function of the scattering vector magnitude q have been extracted from the scattering profiles and fit to the solution of the Ornstein-Zernike equation using a screened Yukawa potential to describe the double-layer force. Although only a limited q range is used, accurate fits required including an electrostatic repulsion element in the model at low ionic strength, while only a hard sphere model with a tunable diameter is necessary for fitting to high-ionic-strength data. The fit values of net charge agree with available data from potentiometric titrations. Osmotic compressibility data obtained by extrapolating the SAXS profiles or directly from SLS measurements has been fit to a 10-term virial expansion for hard spheres and an equation of state for hard biaxial ellipsoids. We show that modeling rHSA as an ellipsoid, rather than a sphere, provides a much more accurate fit for the thermodynamic data over the entire concentration range. Osmotic virial coefficient data, derived at low protein concentration, can be used to parameterize the model for predicting the behavior up to concentrations as high as 450 g/L. The findings are especially important for the biopharmaceutical sector, which require approaches for predicting concentrated protein solution behavior using minimal sample consumption.

Self-assembly in a model colloidal mixture of dimers and spherical particles

We investigate the structure of a dilute mixture of amphiphilic dimers and spherical particles, a model relevant to the problem of encapsulating globular "guest" molecules in a dispersion. Dimers and spheres are taken to be hard particles, with an additional attraction between spheres and the smaller monomers in a dimer. Using the Monte Carlo simulation, we document the low-temperature formation of aggregates of guests (clusters) held together by dimers, whose typical size and shape depend on the guest concentration χ. For low χ (less than 10%), most guests are isolated and coated with a layer of dimers. As χ progressively increases, clusters grow in size becoming more and more elongated and polydisperse; after reaching a shallow maximum for χ≈50%, the size of clusters again reduces upon increasing χ further. In one case only (χ=50% and moderately low temperature) the mixture relaxed to a fluid of lamellae, suggesting that in this case clusters are metastable with respect to crystal-vapor separation. On heating, clusters shrink until eventually the system becomes homogeneous on all scales. On the other hand, as the mixture is made denser and denser at low temperature, clusters get increasingly larger until a percolating network is formed.

A density functional theory for association of fluid molecules with a functionalized surface: fluid-wall single and double bonding

In this manuscript we extend Wertheim's two-density formalism beyond its first order to model a system of fluid molecules with a single association site close to a planar hard wall with association sites on its surface in a density functional theory framework. The association sites of the fluid molecules are small enough that they can form only one bond, while the wall association sites are large enough to bond with more than one fluid molecule. The effects of temperature and of bulk fluid and wall site densities on the fluid density profile, extent of association, and competition between single and double bonding of fluid segments at the wall sites versus distance from the wall are presented. The theory predictions are compared with new Monte Carlo simulation results and they are in good agreement. The theory captures the surface coverage over wide ranges of temperature and bulk density by introducing the effect of steric hindrance in fluid association at a wall site.

Delivery of Copper-chelating Trientine (TETA) to the central nervous system by surface modified liposomes

The existence of the blood-brain barrier (BBB) complicates the treatment of many central nervous system (CNS) disorders, including the copper storage disease, Wilson's disease. Its CNS symptoms represent a serious problem, since therapeutics for Wilson's disease do not cross the BBB. One strategy to overcome this obstacle is the transfer of drugs across the BBB with colloidal carrier systems like liposomes. The aim of the present study was to encapsulate triethylenetetramine (TETA), a copper chelating agent, into surface modified liposomes and to investigate their permeation across the BBB. Liposomes were modified with cationized bovine serum albumin or penetratin, a cell penetrating peptide. Liposomes were characterized regarding size, PDI, zeta potential and encapsulation efficiency. Size was between 139.4±1.9nm to 171.1±3.5nm with PDI's below 0.2. Zeta potentials of vectorized liposomes were at least 6.9mV higher than those of standard liposomes. Cryo-TEM micrographs displayed liposomal structure, integrity and the similarity of structure and size between loaded, unloaded, vectorized and non- vectorized liposomes. In vivo experiments in rats showed an up to 16-fold higher brain uptake of TETA in vectorized liposomes compared to free TETA or TETA in non-vectorized liposomes, proving successful brain delivery using target seeking surface modifications. Tissue analysis indicated TETA concentrations in the brain being high enough to treat Wilson's disease.

Dependence of the dielectric constant of electrolyte solutions on ionic concentration: A microfield approach

We present a microfield approach for studying the dependence of the orientational polarization of the water in aqueous electrolyte solutions upon the salt concentration and temperature. The model takes into account the orientation of the solvent dipoles due to the electric field created by ions, and the effect of thermal fluctuations. The model predicts a dielectric functional dependence of the form ɛ(c)=ɛ_{w}-βL(3αc/β),β=ɛ_{w}-ɛ_{ms}, where L is the Langevin function, c is the salt concentration, ɛ_{w} is the dielectric of pure water, ɛ_{ms} is the dielectric of the electrolyte solution at the molten salt limit, and α is the total excess polarization of the ions. The functional form gives a remarkably accurate description of the dielectric constant for a variety of salts and a wide range of concentrations.

Polypeptide-Nanoparticle Interactions and Corona Formation Investigated by Monte Carlo Simulations

Biomacromolecule activity is usually related to its ability to keep a specific structure. However, in solution, many parameters (pH, ionic strength) and external compounds (polyelectrolytes, nanoparticles) can modify biomacromolecule structure as well as acid/base properties, thus resulting in a loss of activity and denaturation. In this paper, the impact of neutral and charged nanoparticles (NPs) is investigated by Monte Carlo simulations on polypeptide (PP) chains with primary structure based on bovine serum albumin. The influence of pH, salt valency, and NP surface charge density is systematically studied. It is found that the PP is extended at extreme pH, when no complex formation is observed, and folded at physiological pH. PP adsorption around oppositely-charged NPs strongly limits chain structural changes and modifies its acid/base properties. At physiological pH, the complex formation occurs only with positively-charged NPs. The presence of salts, in particular those with trivalent cations, introduces additional electrostatic interactions, resulting in a mitigation of the impact of negative NPs. Thus, the corona structure is less dense with locally-desorbed segments. On the contrary, very limited impact of salt cation valency is observed when NPs are positive, due to the absence of competitive effects between multivalent cations and NP.

The origin of cooperative solubilisation by hydrotropes

The signature of hydrotropic solubilisation is the sigmoidal solubility curve; when plotted against hydrotrope concentration, solubility increases suddenly after the minimum hydrotrope concentration (MHC), and reaches a plateau at higher hydrotrope concentrations. Here we explain the origin of hydrotropic cooperativity based on statistical thermodynamics.

Textures on the surface of BSA films with different concentrations of sodium halides and water state in solution

The formation of the textures on the surface of the films from the solutions of bovine serum albumin (BSA) with sodium halides (NaF, NaCl, and NaBr) of various concentrations was studied. The formation of symmetric zigzag textures on the surface of BSA films (Cryst Eng 3:173-194, 2000) in the presence of sodium halides depends on the conformational state of the protein globule. Thermal denaturation of BSA also did not allow to form zigzag textures on the surface of the films.