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For: Chaves M, Preto M. Hierarchy of models: from qualitative to quantitative analysis of circadian rhythms in cyanobacteria. Chaos 2013;23:025113. [PMID: 23822511 DOI: 10.1063/1.4810922] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Number Cited by Other Article(s)
1
Fox J, Cummins B, Moseley RC, Gameiro M, Haase SB. A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets. Math Biosci 2024;367:109102. [PMID: 37939998 PMCID: PMC10842220 DOI: 10.1016/j.mbs.2023.109102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 09/13/2023] [Accepted: 10/27/2023] [Indexed: 11/10/2023]
2
Introducing fuzzy reactive graphs: a simple application on biology. Soft comput 2021. [DOI: 10.1007/s00500-020-05353-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
3
Rozum JC, Albert R. Identifying (un)controllable dynamical behavior in complex networks. PLoS Comput Biol 2018;14:e1006630. [PMID: 30532150 PMCID: PMC6301693 DOI: 10.1371/journal.pcbi.1006630] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 12/20/2018] [Accepted: 11/11/2018] [Indexed: 12/13/2022]  Open
4
Mendes ND, Henriques R, Remy E, Carneiro J, Monteiro PT, Chaouiya C. Estimating Attractor Reachability in Asynchronous Logical Models. Front Physiol 2018;9:1161. [PMID: 30245634 PMCID: PMC6137237 DOI: 10.3389/fphys.2018.01161] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Accepted: 08/02/2018] [Indexed: 12/12/2022]  Open
5
Hernansaiz-Ballesteros RD, Cardelli L, Csikász-Nagy A. Single molecules can operate as primitive biological sensors, switches and oscillators. BMC SYSTEMS BIOLOGY 2018;12:70. [PMID: 29914480 PMCID: PMC6007071 DOI: 10.1186/s12918-018-0596-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 06/05/2018] [Indexed: 01/07/2023]
6
Figueiredo D, Martins MA, Chaves M. Applying differential dynamic logic to reconfigurable biological networks. Math Biosci 2017;291:10-20. [PMID: 28610888 DOI: 10.1016/j.mbs.2017.05.012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Accepted: 05/29/2017] [Indexed: 11/25/2022]
7
Saadatpour A, Albert R. A comparative study of qualitative and quantitative dynamic models of biological regulatory networks. ACTA ACUST UNITED AC 2016. [DOI: 10.1140/epjnbp/s40366-016-0031-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
8
Stötzel C, Röblitz S, Siebert H. Complementing ODE-Based System Analysis Using Boolean Networks Derived from an Euler-Like Transformation. PLoS One 2015;10:e0140954. [PMID: 26496494 PMCID: PMC4619740 DOI: 10.1371/journal.pone.0140954] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2015] [Accepted: 10/02/2015] [Indexed: 01/17/2023]  Open
9
Albert R, Thakar J. Boolean modeling: a logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions. WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE 2015;6:353-69. [PMID: 25269159 DOI: 10.1002/wsbm.1273] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
10
Albert R, Collins JJ, Glass L. Introduction to focus issue: quantitative approaches to genetic networks. CHAOS (WOODBURY, N.Y.) 2013;23:025001. [PMID: 23822498 DOI: 10.1063/1.4810923] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
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