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Méndez E, Laria D. Nuclear quantum effects on the hydrogen bond donor-acceptor exchange in water-water and water-methanol dimers. J Chem Phys 2020; 153:054302. [PMID: 32770908 DOI: 10.1063/5.0016122] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present results from path integral molecular dynamics simulations that describe effects from the explicit incorporation of nuclear quantum fluctuations on the topology of the free energy associated with the geared exchange of hydrogen bonds in the water-water dimer. Compared to the classical treatment, our results reveal important reductions in the free energy barriers and changes at a qualitative level in the overall profile. Most notable are those manifested by a plateau behavior, ascribed to nuclear tunneling, which bridges reactant and product states, contrasting with the usual symmetric double-well profile. The characteristics of the proton localizations along the pathway are examined. An imaginary time analysis of the rotational degrees of freedom of the partners in the dimer at the vicinities of transition states shows a clear "anticorrelation" between intermolecular interactions coupling beads localized in connective and dangling basins of attractions. As such, the transfer is operated by gradual concerted inter-basin migrations in opposite directions, at practically no energy costs. Modifications operated by partial deuteration and by the asymmetries in the hydrogen bonding characteristics prevailing in water-methanol heterodimers are also examined.
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Affiliation(s)
- Emilio Méndez
- Departamento de Química Inorgánica Analítica y Química-Física e INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
| | - Daniel Laria
- Departamento de Química Inorgánica Analítica y Química-Física e INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
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2
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Videla PE, Rossky PJ, Laria D. Isotopic equilibria in aqueous clusters at low temperatures: Insights from the MB-pol many-body potential. J Chem Phys 2018; 148:084303. [DOI: 10.1063/1.5019377] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Affiliation(s)
- Pablo E. Videla
- Departamento de Química Inorgánica Analítica y Química-Física e INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
| | - Peter J. Rossky
- Department of Chemistry, Rice University, Houston, Texas 77005-1892, USA
| | - Daniel Laria
- Departamento de Química Inorgánica Analítica y Química-Física e INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
- Departamento de Física de la Materia Condensada, Comisión Nacional de Energía Atómica, Avenida Libertador 8250, 1429 Buenos Aires, Argentina
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Wong A, Shi L, Auchettl R, McNaughton D, Appadoo DRT, Robertson EG. Heavy snow: IR spectroscopy of isotope mixed crystalline water ice. Phys Chem Chem Phys 2016; 18:4978-93. [DOI: 10.1039/c5cp06756a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Temperature and isotopic dependence of simulated and experimental spectra shed light on the vibrational modes of crystalline water ice.
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Affiliation(s)
- Andy Wong
- School of Chemistry
- Monash University
- Clayton
- Australia
| | - Liang Shi
- Theoretical Chemistry Institute and Department of Chemistry
- University of Wisconsin
- Madison
- USA
| | - Rebecca Auchettl
- Department of Chemistry and Physics
- La Trobe Institute for Molecular Science
- La Trobe University
- Australia
| | | | | | - Evan G. Robertson
- Department of Chemistry and Physics
- La Trobe Institute for Molecular Science
- La Trobe University
- Australia
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Uras-Aytemiz N, Balcı FM, Maşlakcı Z, Özsoy H, Devlin JP. Molecular Modes and Dynamics of HCl and DCl Guests of Gas Clathrate Hydrates. J Phys Chem A 2015. [PMID: 26225898 DOI: 10.1021/acs.jpca.5b07019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Recent years have yielded advances in the placement of unusual molecules as guests within clathrate hydrates (CHs) without severe distortion of the classic lattice structures. Reports describing systems for which observable but limited distortion does occur are available for methanol, ammonia, acetone, and small ether molecules. In these particular examples, the large-cage molecules often participate as non-classical guests H-bonded to the cage walls. Here, we expand the list of such components to include HCl/DCl and HBr as small-cage guests. Based on FTIR spectra of nanocrystalline CHs from two distinct preparative methods combined with critical insights derived from on-the-fly molecular dynamics and ab initio computational data, a coherent argument emerges that these strong acids serve as a source of molecular small-cage guests, ions, and orientational defects. Depending on the HCl/DCl content the ions, defects and molecular guests determine the CH structures, some of which form in sub-seconds via an all-vapor preparative method.
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Affiliation(s)
- Nevin Uras-Aytemiz
- Department of Polymer Engineering, Karabuk University , 78050 Karabuk, Turkey
| | - F Mine Balcı
- Department of Chemistry, Suleyman Demirel University , 32260 Isparta, Turkey
| | - Zafer Maşlakcı
- Department of Chemistry, Karabuk University , 78050 Karabuk, Turkey
| | - Hasan Özsoy
- Department of Chemistry, Karabuk University , 78050 Karabuk, Turkey
| | - J Paul Devlin
- Department of Chemistry, Oklahoma State University , Stillwater, Oklahoma 74078, United States
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5
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Videla PE, Rossky PJ, Laria D. Surface Isotope Segregation as a Probe of Temperature in Water Nanoclusters. J Phys Chem Lett 2014; 5:2375-2379. [PMID: 26279562 DOI: 10.1021/jz501043k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Using ring polymer molecular dynamics simulations, we examine equilibrium and dynamical characteristics of solid-like, aqueous clusters that combine isotopic mixtures of HDO dilute in H2O, at temperatures intermediate between 50 and 175 K. In particular, we focus attention on the relative thermodynamic stabilities of the two isotopes at dangling hydrogen bond sites. The water octamer is analyzed as a reference system. For this aggregate, decreasing temperature yields a gradual stabilization of the light isotope at dangling sites in molecules acting as single-donor-double-acceptors of hydrogen bonds. At T ∼ 50 K, the imbalance between the corresponding quantum kinetic energies leads to a free energy difference between dangling and hydrogen bonded sites of the order of ∼2kBT. Similar free energy differences were found at dangling sites in Nw = 50 water clusters. The extent of the H/D segregation can be adequately monitored by modifications in the peak intensity of the high frequency shoulder of the stretching band of the infrared spectrum. These signals, in turn, represent a potential experimental signature of the elusive temperature of clusters in molecular beams.
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Affiliation(s)
- Pablo E Videla
- †Departamento de Química Inorgánica Analítica y Química-Física e INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
| | - Peter J Rossky
- ‡Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712-0165, United States
| | - Daniel Laria
- †Departamento de Química Inorgánica Analítica y Química-Física e INQUIMAE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
- §Departamento de Física de la Materia Condensada, Comisión Nacional de Energía Atómica, Avenida Libertador 8250, 1429 Buenos Aires, Argentina
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Oba Y, Osaka K, Watanabe N, Chigai T, Kouchi A. Reaction kinetics and isotope effect of water formation by the surface reaction of solid H2O2with H atoms at low temperatures. Faraday Discuss 2014; 168:185-204. [PMID: 25302380 DOI: 10.1039/c3fd00112a] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Steponavičius R, Thennadil SN. Extraction of Chemical Information of Suspensions Using Radiative Transfer Theory To Remove Multiple Scattering Effects: Application to a Model Multicomponent System. Anal Chem 2011; 83:1931-7. [DOI: 10.1021/ac1024073] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Raimundas Steponavičius
- School of Chemical Engineering and Advanced Materials, Newcastle University, Merz Court, Newcastle upon Tyne NE1 7RU, United Kingdom
| | - Suresh N. Thennadil
- Department of Chemical and Process Engineering, University of Strathclyde, James Weir Building, 75 Montrose Street, Glasgow G1 1XJ, United Kingdom
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Gibson KD, Killelea DR, Yuan H, Becker JS, Sibener SJ. Determination of the sticking coefficient and scattering dynamics of water on ice using molecular beam techniques. J Chem Phys 2011; 134:034703. [DOI: 10.1063/1.3528116] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Vu TH, Dai Kälin S, Shultz MJ. Spectroscopic Identification of Water−Propane Interaction: Implications for Clathrate Nucleation. J Phys Chem A 2010; 114:6356-60. [DOI: 10.1021/jp101678z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Tuan Hoang Vu
- Pearson Research Laboratory, Department of Chemistry, Tufts University, Medford, Massachusetts 02155, and AmniSure International LLC, 30 JFK Street, Cambridge, Massachusetts 02138
| | - Sarah Dai Kälin
- Pearson Research Laboratory, Department of Chemistry, Tufts University, Medford, Massachusetts 02155, and AmniSure International LLC, 30 JFK Street, Cambridge, Massachusetts 02138
| | - Mary Jane Shultz
- Pearson Research Laboratory, Department of Chemistry, Tufts University, Medford, Massachusetts 02155, and AmniSure International LLC, 30 JFK Street, Cambridge, Massachusetts 02138
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Affiliation(s)
- Lukasz Cwiklik
- The Fritz Haber Institute for Molecular Dynamics, The Hebrew University, Jerusalem 91904, Israel, and Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078
| | - J. P. Devlin
- The Fritz Haber Institute for Molecular Dynamics, The Hebrew University, Jerusalem 91904, Israel, and Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078
| | - Victoria Buch
- The Fritz Haber Institute for Molecular Dynamics, The Hebrew University, Jerusalem 91904, Israel, and Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078
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Buch V, Tarbuck T, Richmond GL, Groenzin H, Li I, Shultz MJ. Sum frequency generation surface spectra of ice, water, and acid solution investigated by an exciton model. J Chem Phys 2007; 127:204710. [DOI: 10.1063/1.2790437] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Buch V, Milet A, Vácha R, Jungwirth P, Devlin JP. Water surface is acidic. Proc Natl Acad Sci U S A 2007; 104:7342-7. [PMID: 17452650 PMCID: PMC1863452 DOI: 10.1073/pnas.0611285104] [Citation(s) in RCA: 260] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2006] [Indexed: 11/18/2022] Open
Abstract
Water autoionization reaction 2H2O --> H3O- + OH- is a textbook process of basic importance, resulting in pH = 7 for pure water. However, pH of pure water surface is shown to be significantly lower, the reduction being caused by proton stabilization at the surface. The evidence presented here includes ab initio and classical molecular dynamics simulations of water slabs with solvated H3O+ and OH- ions, density functional studies of (H2O)(48)H+ clusters, and spectroscopic isotopic-exchange data for D2O substitutional impurities at the surface and in the interior of ice nanocrystals. Because H3O+ does, but OH- does not, display preference for surface sites, the H2O surface is predicted to be acidic with pH < 4.8. For similar reasons, the strength of some weak acids, such as carbonic acid, is expected to increase at the surface. Enhanced surface acidity can have a significant impact on aqueous surface chemistry, e.g., in the atmosphere.
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Affiliation(s)
- Victoria Buch
- *Fritz Haber Institute for Molecular Dynamics, Hebrew University, Jerusalem 91904, Israel
| | - Anne Milet
- Département de Chimie Moléculaire, Unité Mixte de Recherche 5250, Centre National de la Recherche Scientifique, Université Joseph Fourier, BP53, 38041 Grenoble, France
| | - Robert Vácha
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, 16610 6 Prague, Czech Republic; and
| | - Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, 16610 6 Prague, Czech Republic; and
| | - J. Paul Devlin
- Department of Chemistry, Oklahoma State University, Stillwater, OK 74078
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Kido Soule MC, Blower PG, Richmond GL. Nonlinear Vibrational Spectroscopic Studies of the Adsorption and Speciation of Nitric Acid at the Vapor/Acid Solution Interface. J Phys Chem A 2007; 111:3349-57. [PMID: 17419597 DOI: 10.1021/jp0686994] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Nitric acid plays an important role in the heterogeneous chemistry of the atmosphere. Reactions involving HNO(3) at aqueous interfaces in the stratosphere and troposphere depend on the state of nitric acid at these surfaces. The vapor/liquid interface of HNO(3)-H2O binary solutions and HNO(3)-H(2)SO(4)-H2O ternary solutions are examined here using vibrational sum frequency spectroscopy (VSFS). Spectra of the NO2 group at different HNO(3) mole fractions and under different polarization combinations are used to develop a detailed picture of these atmospherically important systems. Consistent with surface tension and spectroscopic measurements from other laboratories, molecular nitric acid is identified at the surface of concentrated solutions. However, the data here reveal the adsorption of two different hydrogen-bonded species of undissociated HNO(3) in the interfacial region that differ in their degree of solvation of the nitro group. The adsorption of these undissociated nitric acid species is shown to be sensitive to the H2O:HNO(3) ratio as well as to the concentration of sulfuric acid.
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Affiliation(s)
- Melissa C Kido Soule
- Department of Chemistry, University of Oregon, 1253 University of Oregon, Eugene, Oregon 97403, USA
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Anick DJ. Proton and deuteron position preferences in water clusters: an ab initio study. J Chem Phys 2005; 123:244309. [PMID: 16396539 DOI: 10.1063/1.2139669] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
In order to explore the effect of H-to-D substitution on the zero-point energy (ZPE) of water clusters, Hessians were computed for a database of 53 optimized (H2O)n clusters, 5 < or = n < or = 21, at the B3LYP6-311 + + G** level. The 53 clusters contained 1524 protons, which were sorted into 18 categories according to the type of their donor O and (if not free) acceptor O. Letting deltaZPE[H]* denote the change in ZPE when the proton H* is replaced by D, mean values for deltaZPE[H*] for the H-bonded categories ranged from -2172 cal mol(-1) for H* in a DDAA-DDAA bond to -2118 for H* in a DAA-DDA bond. Mean value for H* free on DAA (respectively, DA) was -2018 (respectively, -1969). For DAA-DDA bonds, and for short H bonds in general, there was a strong inverse correlation between /deltaZPE[H*]/ and the O-H* distance. deltaZPE for multiple H-to-D substitutions was additive, except for a cooperativity effect of -13.7 to -19.7 cal mol(-1) when two substituted protons were in the same H2O unit and a much smaller cooperativity when one proton's donor was the other's acceptor. Implications of these data include a relative preference for D to occupy H bonded rather than free positions in finite water clusters, a value of 3.82 for the disproportionation equilibrium constant of mixed ice at 150 K, increased occupation by H at surface positions of mixed ice, and a larger average coordination number for liquid D2O than for liquid H2O.
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Affiliation(s)
- David J Anick
- Harvard Medical School, Harvard University, McLean Hospital, Belmont, Massachusetts 02478, USA.
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Devlin J, Severson M, Mohamed F, Sadlej J, Buch V, Parrinello M. Experimental and computational study of isotopic effects within the Zundel ion. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.04.087] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Abstract
The range of interactions between fibre and water and the consequential properties of the bound water are modelled and examined. Dietary fibre may interact with water by means of polar and hydrophobic interactions, hydrogen bonding and enclosure. The results of these interactions vary with the flexibility of the fibre surface. When the fibre is insoluble or junction zones are formed,this may result in profound changes in the surrounding water. Such interactions are capable of affecting the structuring and solvation properties of water well away from the immediate surfaces involved. In particular, the specific properties of water enclosed by dietary fibre are examined, an area of investigation previously receiving scant attention. The way this enclosure may affect the properties of water is exemplified by modelling the colon to show how fibre may exert a beneficial action by the preferential partitioning of hydrophobic carcinogens. Unfermented dietary fibre has a tendency to form low-density expanded water that acts as a preferential solvent for hydrophobic molecules when compared with the less-structured denser water within the much more hydrophilic mucus layer.
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Ice Nanoparticles and Ice Adsorbate Interactions: FTIR Spectroscopy and Computer Simulations. ACTA ACUST UNITED AC 2003. [DOI: 10.1007/978-3-662-05231-0_18] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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Raymond EA, Tarbuck TL, Brown MG, Richmond GL. Hydrogen-Bonding Interactions at the Vapor/Water Interface Investigated by Vibrational Sum-Frequency Spectroscopy of HOD/H2O/D2O Mixtures and Molecular Dynamics Simulations. J Phys Chem B 2002. [DOI: 10.1021/jp021366w] [Citation(s) in RCA: 220] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Elizabeth A. Raymond
- Department of Chemistry and Materials Science Institute, University of Oregon, Eugene, Oregon 97403
| | - Teresa L. Tarbuck
- Department of Chemistry and Materials Science Institute, University of Oregon, Eugene, Oregon 97403
| | - Mac G. Brown
- Department of Chemistry and Materials Science Institute, University of Oregon, Eugene, Oregon 97403
| | - Geraldine L. Richmond
- Department of Chemistry and Materials Science Institute, University of Oregon, Eugene, Oregon 97403
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Raymond EA, Tarbuck TL, Richmond GL. Isotopic Dilution Studies of the Vapor/Water Interface as Investigated by Vibrational Sum-Frequency Spectroscopy. J Phys Chem B 2002. [DOI: 10.1021/jp013967d] [Citation(s) in RCA: 102] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- E. A. Raymond
- Department of Chemistry and Materials Science Institute, University of Oregon, Eugene, Oregon
| | - T. L. Tarbuck
- Department of Chemistry and Materials Science Institute, University of Oregon, Eugene, Oregon
| | - G. L. Richmond
- Department of Chemistry and Materials Science Institute, University of Oregon, Eugene, Oregon
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Devlin JP. Structure, spectra, and mobility of low-pressure ices: Ice I, amorphous solid water, and clathrate hydrates atT< 150 K. ACTA ACUST UNITED AC 2001. [DOI: 10.1029/2000je001301] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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