1
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Arildii D, Matsumoto Y, Dopfer O. Internal Energy Dependence of the Pyrrole Dimer Cation Structures Formed in a Supersonic Plasma Expansion: Charge-Resonance and Hydrogen-Bonded Isomers. J Phys Chem A 2024; 128:3993-4006. [PMID: 38741030 PMCID: PMC11129305 DOI: 10.1021/acs.jpca.4c01834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 04/29/2024] [Accepted: 05/01/2024] [Indexed: 05/16/2024]
Abstract
The structures of the pyrrole dimer cation (Py2+) formed in an electron-ionization-driven supersonic plasma expansion of Py seeded in Ar or N2 are probed as a function of its internal energy by infrared photodissociation (IRPD) spectroscopy in a tandem mass spectrometer. The IRPD spectra recorded in the CH and NH stretch ranges are analyzed by dispersion-corrected density functional theory (DFT) calculations at the B3LYP-D3/aug-cc-pVTZ level. The spectra of the cold Ar/N2-tagged Py2+ clusters, Py2+Ln (n = 1-5 for Ar, n = 1 for N2), indicate the exclusive formation of the most stable antiparallel π-stacked Py2+ structure under cold conditions, which is stabilized by charge-resonance interaction. The bare Py2+ dimers produced in the ion source have higher internal energy, and the observation of additional transitions in their IRPD spectra suggests a minor population of less stable hydrogen-bonded isomers composed of heterocyclic Py/Py+ structures formed after intramolecular H atom transfer and ring opening. These intermolecular isomers differ from the chemically bonded structures proposed earlier in the analysis of IRPD spectra of Py2+ generated by VUV ionization of neutral Pyn clusters.
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Affiliation(s)
- Dashjargal Arildii
- Institut
für Optik und Atomare Physik, Technische
Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Yoshiteru Matsumoto
- Department
of Chemistry, Faculty of Science, Shizuoka
University, 836 Ohya, Suruga-ku, Shizuoka 422-8529, Japan
| | - Otto Dopfer
- Institut
für Optik und Atomare Physik, Technische
Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
- International
Research Frontiers Initiative, Tokyo Institute
of Technology, 4259 Nagatsuta-cho,
Midori-ku, Yokohama 226-8503, Japan
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2
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Kato T, Fujii A. Infrared Spectroscopy of (Benzene-H 2S-X n) +, X = H 2O ( n = 1 and 2) and CH 3OH ( n = 1), Radical Cation Clusters: Microsolvation Effects on the S-π Hemibond. J Phys Chem A 2023; 127:742-750. [PMID: 36636986 DOI: 10.1021/acs.jpca.2c08324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
An unconventional covalent bond in which three electrons are shared by two centers is called hemibond. Hemibond formation frequently competes with proton transfer (or ionic hydrogen bond formation), but there have been a few experimental reports on such competition. In the present study, we focus on the (benzene-H2S)+ radical cation cluster, which is a model system of the S-π hemibond. The stability of the S-π hemibond to the microsolvation by water and methanol is explored with infrared spectroscopy of (benzene-H2S-Xn)+, X = H2O (n = 1 and 2) and CH3OH (n = 1), clusters. We also perform energy-optimization and vibrational simulations of (benzene-H2S-Xn)+. By comparison among the observed and simulated spectra, we determine the intermolecular binding motifs in (benzene-H2S-Xn)+. While the S-π hemibonded isomer is exclusively populated in (benzene-H2S-H2O)+, both the hemibonded and proton-transferred isomers coexist in [benzene-H2S-(H2O)2]+ and (benzene-H2S-CH3OH)+. Breaking of the S-π hemibond by the microsolvation is observed, and its solvent and cluster size dependence is interpreted by the proton affinity and the coordination property of the solvent moiety.
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Affiliation(s)
- Takeru Kato
- Department of Chemistry, Graduate School of Science, Tohoku University Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University Sendai 980-8578, Japan
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3
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Miyazaki M, Sakata Y, Ono M, Otsuka R, Ohara R, Dopfer O, Fujii M. Isomer-Selective Spectroscopy and Dynamics of Phenol-Ar n ( n ≤ 5) Clusters. J Phys Chem A 2021; 125:9969-9981. [PMID: 34761924 DOI: 10.1021/acs.jpca.1c04815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Structures and ionization-induced solvation dynamics of phenol-(argon)n clusters, PhOH-Arn (n ≤ 5), were studied by using a variety of isomer-selective photoionization and vibrational spectroscopic techniques. Several higher-energy isomers were found and assigned for the first time by systematically controlling the experimental conditions of the supersonic expansion. This behavior is also confirmed for the PhOH-Kr2 cluster. Solvation structures are elucidated by evaluating systematic shifts in the S1 ← S0 origin and ionization energies obtained by resonance-enhanced photoionization, in addition to the OH stretching frequency obtained by IR photodissociation. Isomer-selective picosecond time-resolved IR spectroscopy for the n = 2 clusters revealed that the dynamics for the ionization-induced intermolecular π → H site-switching reaction strongly depends on the initial isomeric structure. In particular, the reaction time for the (1|1) isomer is 7 ps, while that for (2|0) is <3 ps. This difference shows that the switching time is determined by the distance of the reaction coordinate between the initial π-site and the final OH-site.
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Affiliation(s)
- Mitsuhiko Miyazaki
- Natural Science Division, Faculty of Core Research, Ochanomizu University, Tokyo 112-8610, Japan.,Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Yuri Sakata
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Megumi Ono
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Remina Otsuka
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Ryuhei Ohara
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany.,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan.,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
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4
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Wong ZC, Ungur L. Exploring vibronic coupling in the benzene radical cation and anion with different levels of the GW approximation. Phys Chem Chem Phys 2021; 23:19054-19070. [PMID: 34612443 DOI: 10.1039/d1cp02795f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The linear vibronic coupling constants of the benzene radical cation and anion have been obtained with different levels of the GW approximation, including G0W0, eigenvalue self-consistent GW, and quasiparticle self-consistent GW, as well as DFT with the following exchange-correlation functionals: BLYP, B3LYP, CAM-B3LYP, tuned CAM-B3LYP, and an IP-tuned CAM-B3LYP functional. The vibronic coupling constants were calculated numerically using the gradients of the eigenvalues of the degenerate HOMOs and LUMOs of the neutral benzene molecule for DFT, while the numerical gradients of the quasiparticle energies were used in the case of GW. The results were evaluated against those of high level wave function methods in the literature, and the approximate self-consistent GW methods and G0W0 with long-range corrected functionals were found to yield the best results on the whole.
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Affiliation(s)
- Zi Cheng Wong
- Department of Chemistry, National University of Singapore, Block S8 Level 3, 3 Science Drive 3, 117543, Singapore.
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5
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Chatterjee K, Dopfer O. Protonation of Naphthalene–(Water)n Nanoclusters: Intracluster Proton Transfer to Hydration Shell Revealed by Infrared Photodissociation Spectroscopy. J Phys Chem A 2020; 124:1134-1151. [DOI: 10.1021/acs.jpca.9b11779] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
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6
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Wang D, Hattori K, Fujii A. The S∴π hemibond and its competition with the S∴S hemibond in the simplest model system: infrared spectroscopy of the [benzene-(H 2S) n ] + ( n = 1-4) radical cation clusters. Chem Sci 2019; 10:7260-7268. [PMID: 31588295 PMCID: PMC6685351 DOI: 10.1039/c9sc02476j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 06/19/2019] [Indexed: 11/21/2022] Open
Abstract
The S∴π hemibond (two-center three-electron, 2c-3e, bond) is an attractive interaction between a sulfur atom and π electrons. The S∴π hemibond is of essential importance in understanding chemistry of sulfur radical cations, and its roles in biochemistry have recently attracted much interest. In the present study, we observe the S∴π hemibond in the simplest model system in the gas phase. Infrared spectroscopy is applied to the [benzene-(H2S) n ]+ (n = 1-4) radical cation clusters. In n = 1, the CH stretch and SH stretch bands of the benzene and H2S moieties, respectively, are clearly different from those of the neutral molecules but similar to those of the ionic species. These vibrational features show that the positive charge is delocalized over the cluster due to the S∴π hemibond formation. In n = 2-4, the S∴S hemibond and S-π-S multicenter hemibond (three-center five-electron, 3c-5e, bond) can compete with the S∴π hemibond. The observed vibrational features clearly indicate that the S∴S hemibond formation is superior to the S∴π hemibond and S-π-S multicenter hemibond. Calculations of several dispersion-corrected density functionals are compared with the observations. While all the tested functionals qualitatively catch the feature of the S∴π hemibond, the energy order among the isomers of the different hemibond motifs strongly depends on the functionals. These results demonstrate that the [benzene-(H2S) n ]+ clusters can be a benchmark of density functionals to evaluate the sulfur hemibonds.
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Affiliation(s)
- Dandan Wang
- Department of Chemistry , Graduate School of Science , Tohoku University , Sendai 980-8578 , Japan .
| | - Keigo Hattori
- Department of Chemistry , Graduate School of Science , Tohoku University , Sendai 980-8578 , Japan .
| | - Asuka Fujii
- Department of Chemistry , Graduate School of Science , Tohoku University , Sendai 980-8578 , Japan .
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7
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Chatterjee K, Matsumoto Y, Dopfer O. Aromatic Charge Resonance Interaction Probed by Infrared Spectroscopy. Angew Chem Int Ed Engl 2019; 58:3351-3355. [DOI: 10.1002/anie.201811432] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Revised: 11/22/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare PhysikTechnische Universität Berlin Hardenbergstr. 36 10623 Berlin Germany
| | - Yoshiteru Matsumoto
- Department of ChemistryFaculty of ScienceShizuoka University 836 Ohya, Suruga Shizuoka 422-8529 Japan
| | - Otto Dopfer
- Institut für Optik und Atomare PhysikTechnische Universität Berlin Hardenbergstr. 36 10623 Berlin Germany
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8
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Chatterjee K, Matsumoto Y, Dopfer O. Aromatic Charge Resonance Interaction Probed by Infrared Spectroscopy. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201811432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare PhysikTechnische Universität Berlin Hardenbergstr. 36 10623 Berlin Germany
| | - Yoshiteru Matsumoto
- Department of ChemistryFaculty of ScienceShizuoka University 836 Ohya, Suruga Shizuoka 422-8529 Japan
| | - Otto Dopfer
- Institut für Optik und Atomare PhysikTechnische Universität Berlin Hardenbergstr. 36 10623 Berlin Germany
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9
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Chatterjee K, Dopfer O. Switching of binding site from nonpolar to polar ligands toward cationic benzonitrile revealed by infrared spectroscopy. J Chem Phys 2018; 149:174315. [DOI: 10.1063/1.5057430] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik, TU Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, TU Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
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10
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Hewett DM, Bocklitz S, Tabor DP, Sibert Iii EL, Suhm MA, Zwier TS. Identifying the first folded alkylbenzene via ultraviolet, infrared, and Raman spectroscopy of pentylbenzene through decylbenzene. Chem Sci 2017; 8:5305-5318. [PMID: 30510673 PMCID: PMC6223349 DOI: 10.1039/c7sc02027a] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Accepted: 05/22/2017] [Indexed: 01/19/2023] Open
Abstract
The shortest possible single-chain alkylbenzene to exist in a folded conformation is determined using spectroscopic and theoretical techniques.
The conformational preferences of pentyl- through decylbenzene are studied under jet-cooled conditions in the gas phase. Laser-induced fluorescence excitation spectra, fluorescence-dip infrared spectra in the alkyl CH stretch region, and Raman spectra are combined to provide assignments for the observed conformers. Density functional theory calculations at the B3LYP-D3BJ/def2TZVP level of theory provide relative energies and normal mode vibrations that serve as inputs for an anharmonic local mode theory introduced in earlier work on alkylbenzenes with n = 2–4. This model explicitly includes anharmonic mixing of the CH stretch modes with the overtones of scissors/bend modes of the CH2 and CH3 groups in the alkyl chain, and is used to assign and interpret the single-conformation IR spectra. In octylbenzene, a pair of LIF transitions shifted –92 and –78 cm–1 from the all-trans electronic origin have unique alkyl CH stretch transitions that are fit by the local model to a g1g3g4 conformation in which the alkyl chain folds back over the aromatic ring π cloud. Its calculated energy is only 1.0 kJ mol–1 above the all-trans global minimum. This fold is at an alkyl chain length less than half that of the pure alkanes (n = 18), consistent with a smaller energy cost for the g1 dihedral and the increased dispersive interaction of the chain with the π cloud. Local site frequencies for the entire set of conformers from the local mode model show ‘edge effects’ that raise the site frequencies of CH2(1) and CH2(2) due to the phenyl ring and CH2(n – 1) due to the methyl group. The g1g3g4 conformer also shows local sites shifted up in frequency at CH2(3) and CH2(6) due to interaction with the π cloud.
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Affiliation(s)
- Daniel M Hewett
- Department of Chemistry , Purdue University , West Lafayette , IN 47907 , USA .
| | - Sebastian Bocklitz
- Institut für Physikalische Chemie , Universität Göttingen , Göttingen , Germany
| | - Daniel P Tabor
- Department of Chemistry , University of Wisconsin-Madison , Madison , WI 53706 , USA .
| | - Edwin L Sibert Iii
- Department of Chemistry , University of Wisconsin-Madison , Madison , WI 53706 , USA .
| | - Martin A Suhm
- Institut für Physikalische Chemie , Universität Göttingen , Göttingen , Germany
| | - Timothy S Zwier
- Department of Chemistry , Purdue University , West Lafayette , IN 47907 , USA .
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11
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Chatterjee K, Dopfer O. Infrared spectroscopy of hydrated polycyclic aromatic hydrocarbon cations: naphthalene+–water. Phys Chem Chem Phys 2017; 19:32262-32271. [DOI: 10.1039/c7cp06893j] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The combination of infrared spectroscopy and quantum chemical calculations unravels the salient properties of the bifurcated CH⋯O ionic hydrogen bond typical for the PAH+–H2O interaction.
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Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
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12
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Schwing K, Gerhards M. Investigations on isolated peptides by combined IR/UV spectroscopy in a molecular beam – structure, aggregation, solvation and molecular recognition. INT REV PHYS CHEM 2016. [DOI: 10.1080/0144235x.2016.1229331] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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13
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Xie M, Matsuda Y, Fujii A. Infrared Spectroscopic Investigation of the Acidic CH Bonds in Cationic n-Alkanes: Pentane, Hexane, and Heptane. J Phys Chem A 2016; 120:6351-6. [DOI: 10.1021/acs.jpca.6b05567] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Min Xie
- Department of Chemistry,
Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
| | - Yoshiyuki Matsuda
- Department of Chemistry,
Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry,
Graduate School of Science, Tohoku University, 6-3, Aramaki Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
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14
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Tabor DP, Hewett DM, Bocklitz S, Korn JA, Tomaine AJ, Ghosh AK, Zwier TS, Sibert EL. Anharmonic modeling of the conformation-specific IR spectra of ethyl, n-propyl, and n-butylbenzene. J Chem Phys 2016; 144:224310. [PMID: 27306010 DOI: 10.1063/1.4953181] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Daniel P. Tabor
- Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Daniel M. Hewett
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Sebastian Bocklitz
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Joseph A. Korn
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Anthony J. Tomaine
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Arun K. Ghosh
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Timothy S. Zwier
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Edwin L. Sibert
- Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
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15
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Zhang L, Liu S, Cheng M, Du Y, Zhu Q. Vibrational Spectra and Theoretical Calculations of cis- and trans-3-Fluoro-N-methylaniline in the Neutral (S(0)) and Cationic (D(0)) Ground States. J Phys Chem A 2016; 120:81-94. [PMID: 26669268 DOI: 10.1021/acs.jpca.5b11991] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The mass-analyzed threshold ionization spectra of jet-cooled cis- and trans-3-fluoro-N-methylaniline (3FNMA) were recorded by ionizing via the vibrationless 0(0) and various vibrational levels of the S1 state. The adiabatic ionization energies of cis- and trans-3FNMA are determined to be 61,742 ± 5 and 61,602 ± 5 cm(-1), respectively. In the 0-1800 cm(-1) region, most of the observed vibrations in the D0 state result from the in-plane ring deformation and substituent-sensitive modes. For the high-frequency vibration region, the infrared-ultraviolet double-resonance and autoionization-detected infrared spectroscopies were applied to investigate the N-H and C-H stretching vibrations of bare 3FNMA in the S0 and D0 states. The C-H stretching vibrational information, which we failed to obtain for the bare 3FNMA cation, is complemented by recording the infrared-photodissociation spectra of its Ar cluster cation. It is revealed that a red-shifted frequency and an enhanced intensity are observed for the N-H stretch, while blue-shifted frequencies and greatly decreased intensities are found for both aromatic and the methyl C-H stretches. The blue shift of the C-H stretches is first explained by the balance of two factors, namely, the hyperconjugative interaction and the rehybridization effect. Analysis of the vibrational frequencies reveals a correlation between the relative stability of two rotamers in different electronic states and the relative rigidity of aromatic ring, indicating a mechanism of the long-range interactions "through bond" between the substituents. The density functional theory calculations can well reproduce the vibrational spectra in both S0 and D0 states. With the experimental and theoretical data, the substitution and conformation effects on the properties of 3FNMA in the S0 and D0 states, including the molecular structures, the reactive sites of electrophilic attack, and the vibrational behaviors, were discussed in detail.
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Affiliation(s)
- Lijuan Zhang
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, P. R. China.,Department of Chemical Engineering, Binzhou University , Binzhou 256600, Shandong, P. R. China
| | - Sheng Liu
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, P. R. China
| | - Min Cheng
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, P. R. China
| | - Yikui Du
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, P. R. China
| | - Qihe Zhu
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, P. R. China
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16
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Matsuda Y, Harigaya H, Xie M, Takahashi K, Fujii A. Infrared spectroscopic investigations of cationic ethanol, propanol, and butanol. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.10.044] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Xie M, Matsuda Y, Fujii A. Infrared Spectroscopic Investigation of Photoionization-Induced Acidic C–H Bonds in Cyclic Ethers. J Phys Chem A 2015; 119:5668-75. [DOI: 10.1021/acs.jpca.5b03406] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Min Xie
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki-Aza-Aoba,
Aoba-ku, Sendai, 980-8578 Miyagi, Japan
| | - Yoshiyuki Matsuda
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki-Aza-Aoba,
Aoba-ku, Sendai, 980-8578 Miyagi, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki-Aza-Aoba,
Aoba-ku, Sendai, 980-8578 Miyagi, Japan
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18
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Matsuda Y, Endo T, Mikami N, Fujii A, Morita M, Takahashi K. The Large Variation in Acidity of Diethyl Ether Cation Induced by Internal Rotation about a Single Covalent Bond. J Phys Chem A 2015; 119:4885-90. [DOI: 10.1021/acs.jpca.5b02604] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yoshiyuki Matsuda
- Department of Chemistry, Graduate School
of Science, Tohoku University, Aramaki-Aoba 6-3, Aoba-ku, Sendai, 980-8578, Japan
- Institute for Excellence in Higher Education, Tohoku University, Kawauchi 41, Aoba-ku, Sendai, 980-8576, Japan
| | - Tomoya Endo
- Department of Chemistry, Graduate School
of Science, Tohoku University, Aramaki-Aoba 6-3, Aoba-ku, Sendai, 980-8578, Japan
| | - Naohiko Mikami
- Department of Chemistry, Graduate School
of Science, Tohoku University, Aramaki-Aoba 6-3, Aoba-ku, Sendai, 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School
of Science, Tohoku University, Aramaki-Aoba 6-3, Aoba-ku, Sendai, 980-8578, Japan
| | - Masato Morita
- Institute of Atomic
and Molecular Sciences, Academia Sinica, P.O.Box 23-166, Taipei,10617 Taiwan R.O.C
| | - Kaito Takahashi
- Institute of Atomic
and Molecular Sciences, Academia Sinica, P.O.Box 23-166, Taipei,10617 Taiwan R.O.C
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19
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Morita M, Matsuda Y, Endo T, Mikami N, Fujii A, Takahashi K. Hyperconjugation in diethyl ether cation versus diethyl sulfide cation. Phys Chem Chem Phys 2015; 17:23602-12. [DOI: 10.1039/c5cp03765d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electron donation from the CH bond to the single occupied orbital is observed through the large red shift in the CH stretching band for the diethyl ether cation.
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Affiliation(s)
- Masato Morita
- Institute of Atomic and Molecular Sciences
- Academia Sinica
- Taipei
- Republic of China
| | - Yoshiyuki Matsuda
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Tomoya Endo
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Naohiko Mikami
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Asuka Fujii
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Kaito Takahashi
- Institute of Atomic and Molecular Sciences
- Academia Sinica
- Taipei
- Republic of China
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20
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Shishido R, Kawai Y, Fujii A. Infrared Spectroscopy of Protonated Trimethylamine–(Benzene)n (n = 1–4) as Model Clusters of the Quaternary Ammonium–Aromatic Ring Interaction. J Phys Chem A 2014; 118:7297-305. [DOI: 10.1021/jp4115157] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Ryunosuke Shishido
- Department of Chemistry,
Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Yuki Kawai
- Department of Chemistry,
Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry,
Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
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21
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Matsuda Y, Nakayama Y, Mikami N, Fujii A. Isomer-selective infrared spectroscopy of the cationic trimethylamine dimer to reveal its charge sharing and enhanced acidity of the methyl groups. Phys Chem Chem Phys 2014; 16:9619-24. [DOI: 10.1039/c4cp00659c] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The isomer-selective infrared spectroscopy revealed the charge-shared (hemibond) and the C⋯HN hydrogen-bond structures of the trimethylamine dimer cation.
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Affiliation(s)
- Yoshiyuki Matsuda
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
- Center for the Advancement of Higher Education
| | - Yuichiro Nakayama
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
| | - Naohiko Mikami
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
| | - Asuka Fujii
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai, Japan
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22
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George MAR, Savoca M, Dopfer O. Infrared Spectrum of the Si3H8+Cation: Evidence for a Bridged Isomer with an Asymmetric Three-Center Two-Electron SiHSi Bond. Chemistry 2013; 19:15315-28. [DOI: 10.1002/chem.201302189] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2013] [Indexed: 11/09/2022]
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23
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Savoca M, George MAR, Langer J, Dopfer O. Infrared spectrum of the disilane cation (Si2H6+) from Ar-tagging spectroscopy. Phys Chem Chem Phys 2013; 15:2774-81. [DOI: 10.1039/c2cp43773b] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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24
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Shahravan A, Yelamarty S, Matsoukas T. Microbubble Formation from Plasma Polymers. J Phys Chem B 2012; 116:11737-43. [DOI: 10.1021/jp303793u] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Anaram Shahravan
- Department of Chemical Engineering, The Pennsylvania State University, University Park,
Pennsylvania 16802, United
States
| | - Srinath Yelamarty
- Department of Chemical Engineering, The Pennsylvania State University, University Park,
Pennsylvania 16802, United
States
| | - Themis Matsoukas
- Department of Chemical Engineering, The Pennsylvania State University, University Park,
Pennsylvania 16802, United
States
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25
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Dopfer O, Andrei HS, Solcà N. IR Spectra of C2H5+-N2 Isomers: Evidence for Dative Chemical Bonding in the Isolated Ethanediazonium Ion. J Phys Chem A 2011; 115:11466-77. [DOI: 10.1021/jp208084r] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | - Horia-Sorin Andrei
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | - Nicola Solcà
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
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26
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Ishiuchi SI, Miyazaki M, Sakai M, Fujii M, Schmies M, Dopfer O. Ionization-induced π → H site switching dynamics in phenol–Ar3. Phys Chem Chem Phys 2011; 13:2409-16. [DOI: 10.1039/c0cp01926g] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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27
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Patzer A, Chakraborty S, Dopfer O. Infrared spectra and quantum chemical characterization of weakly bound clusters of the benzoyl cation with Ar and H2O. Phys Chem Chem Phys 2010; 12:15704-14. [DOI: 10.1039/c0cp00696c] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Zhao D, Langer J, Oomens J, Dopfer O. Infrared spectra of protonated polycyclic aromatic hydrocarbon molecules: Azulene. J Chem Phys 2009; 131:184307. [DOI: 10.1063/1.3262720] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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29
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Dopfer O. IR Spectroscopy of Microsolvated Aromatic Cluster Ions: Ionization-Induced Switch in Aromatic Molecule–Solvent Recognition. ACTA ACUST UNITED AC 2009. [DOI: 10.1524/zpch.219.2.125.57302] [Citation(s) in RCA: 130] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
IR spectroscopy, mass spectrometry, and quantum chemical calculations are employed to characterize the intermolecular interaction of a variety of aromatic cations (A+) with several types of solvents. For this purpose, isolated ionic complexes of the type A+–L
n
, in which A+ is microsolvated by a controlled number (n) of ligands (L), are prepared in a supersonic plasma expansion, and their spectra are obtained by IR photodissociation (IRPD) spectroscopy in a tandem mass spectrometer. Two prototypes of aromatic ion–solvent recognition are considered: (i) microsolvation of acidic aromatic cations in a nonpolar hydrophobic solvent and (ii) microsolvation of bare aromatic hydrocarbon cations in a polar hydrophilic solvent. The analysis of the IRPD spectra of A+–L dimers provides detailed information about the intermolecular interaction between the aromatic ion and the neutral solvent, such as ion–ligand binding energies, the competition between different intermolecular binding motifs (H-bonds, π-bonds, charge–dipole bonds), and its dependence on chemical properties of both the A+ cation and the solvent type L. IRPD spectra of larger A+–L
n
clusters yield detailed insight into the cluster growth process, including the formation of structural isomers, the competition between ion–solvent and solvent–solvent interactions, and the degree of (non)cooperativity of the intermolecular interactions as a function of solvent type and degree of solvation. The systematic A+–L
n
cluster studies are shown to reveal valuable new information about fundamental chemical properties of the bare A+ cation, such as proton affinity, acidity, and reactivity. Because of the additional attraction arising from the excess charge, the interaction in the A+–L
n
cation clusters differs largely from that in the corresponding neutral A–L
n
clusters with respect to both the interaction strength and the most stable structure, implying in most cases an ionization-induced switch in the preferred aromatic molecule–solvent recognition motif. This process causes severe limitations for the spectroscopic characterization of ion–ligand complexes using popular photoionization techniques, due to the restrictions imposed by the Franck–Condon principle. The present study circumvents these limitations by employing an electron impact cluster ion source for A+–L
n
generation, which generates predominantly the most stable isomer of a given cluster ion independent of its geometry.
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30
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Walker NR, Walters RS, Tsai MK, Jordan KD, Duncan MA. Infrared photodissociation spectroscopy of Mg(+)(H2O)Ar(n) complexes: isomers in progressive microsolvation. J Phys Chem A 2007; 109:7057-67. [PMID: 16834068 DOI: 10.1021/jp051877t] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ion-molecule complexes of the form Mg(H2O)Ar(n)+ (n = 1-8) are produced by laser vaporization in a pulsed-nozzle cluster source. These complexes are mass-selected and studied with infrared photodissociation spectroscopy in the O-H stretch region. The spectra are interpreted with the aid of ab initio calculations on the n = 1-5 complexes, including examination of various isomeric structures. The combined spectroscopic and theoretical studies reveal the presence of multiple isomeric structures at each cluster size, as the argon atoms assemble around the Mg(+)(H2O) unit. Distinct infrared resonances are measured for argon-on-metal, argon-on-OH and argon-on-two-OH isomers.
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Affiliation(s)
- N R Walker
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA
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31
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Emmeluth C, Poad BLJ, Thompson CD, Bieske EJ. Interactions between the Chloride Anion and Aromatic Molecules: Infrared Spectra of the Cl-−C6H5CH3, Cl-−C6H5NH2 and Cl-−C6H5OH Complexes. J Phys Chem A 2007; 111:7322-8. [PMID: 17530825 DOI: 10.1021/jp070453r] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The Cl- -C6H5CH3*Ar, Cl- -C6H5NH2*Ar, and Cl- -C6H5OH*Ar anion complexes are investigated using infrared photodissociation spectroscopy and ab initio calculations at the MP2/aug-cc-pVDZ level. The results indicate that for Cl- -C6H5NH2 and Cl- -C6H5OH, the Cl- anion is attached to the substituent group by a single near-linear hydrogen bond. For Cl--C6H5CH3, the Cl- is attached to an ortho-hydrogen atom on the aromatic ring and to a hydrogen atom on the methyl group by a weaker hydrogen bond. The principal spectroscopic consequence of the hydrogen-bonding interaction in the three complexes is a red-shift and intensity increase for the CH, NH, and OH stretching modes. Complexities in the infrared spectra in the region of the hydrogen-bonded XH stretch band are associated with Fermi resonances between the hydrogen-stretching vibrational modes and bending overtone and combination levels. There are notable correlations between the vibrational red-shift, the elongation of the H-bonded XH group, and the proton affinity of the aromatic molecule's conjugate base.
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Affiliation(s)
- Corinna Emmeluth
- School of Chemistry, The University of Melbourne, Victoria, Australia 3010
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32
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Lehrer F, Weinkauf R, Metsala A. Comparison of Photoelectron-Spectroscopy Results to Ab-Initio and Density Functional Calculations: The Ethylbenzene Cation. Z PHYS CHEM 2007. [DOI: 10.1524/zpch.2007.221.5.723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
In this work resonant S
0–S
1 two-photon ionization (R2PI) and high-resolution R(1+1’)PI photoelectron spectroscopy (PES) as well as ab initio and density functional (DFT) calculations of ethylbenzene (EB) are combined. Conformer energies and equilibrium geometries have been calculated for neutral and cationic EB with the HF, UHF, B3LYP and the MP2 methods and different basis sets. In agreement with previous results the tail-to-chromophore orientation of neutral EB is orthogonal. This conformer is also the most stable structure in the cation, but a second local minimum in which all carbons lie in a plane (termed “planar” conformer) lays 325cm-1 higher in energy. R(1+1’)PI PE spectra were recorded by time-of-flight spectrometer with an energy resolution (Δ E) below 8 cm-1 and an absolute accuracy of ± 10 cm-1 for electron energies below 200 meV. Because the experiment starts in the orthogonal conformer and ionization is vertical, the recorded PE spectra show the cation ground state vibrations of this conformer. Beside benzene modes also low-energetic tail-to-chromophore modes are observed and assigned by DFT vibrational mode analysis. The differences of the calculated vibrational frequencies between the two conformers are comparable to the deviation between experiment and theory and a conformer assignment by comparison of theory and experiment would be difficult. R(1+1’)PI PE spectra recorded via selected S
1 vibrations provide vibrational assignments for S
1, qualitative S
1–D
0 geometry changes, vibrational symmetries as well as internal vibrational redistribution dynamics in S
1. Charge and spin densities of the neutral and cation were calculated to elucidate the problem of charge delocalization and electronic tail-to-chromophore coupling.
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33
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Chiavarino B, Crestoni ME, Fornarini S, Lemaire J, Maître P, MacAleese L. π-Complex Structure of Gaseous Benzene−NO Cations Assayed by IR Multiple Photon Dissociation Spectroscopy. J Am Chem Soc 2006; 128:12553-61. [PMID: 16984206 DOI: 10.1021/ja0637548] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[C(6)H(6)NO](+) ions, in two isomeric forms involved as key intermediates in the aromatic nitrosation reaction, have been produced in the gas phase and analyzed by IR multiple photon dissociation (IRMPD) spectroscopy in the 800-2200 cm(-)(1) fingerprint wavenumber range, exploiting the high fluence and wide tunability of a free electron laser (FEL) source. The IRMPD spectra were compared with the IR absorption spectra calculated for the optimized structures of potential isomers, thus allowing structural information on the absorbing species. [C(6)H(6)NO](+) ions were obtained by two routes, taking advantage of the FEL coupling to two different ion traps. In the first one, an FT-ICR mass spectrometer, a sequence of ion-molecule reactions was allowed to occur, ultimately leading to an NO(+) transfer process to benzene. The so-formed ions displayed IRMPD features characteristic of a [benzene,NO](+) pi-complex structure, including a prominent band at 1963 cm(-)(1), within the range for the N-O bond stretching vibration of NO (1876 cm(-)(1)) and NO(+) (2344 cm(-)(1)). A quite distinct species is formed by electrospray ionization (ESI) of a methanol solution of nitrosobenzene. The ions transferred and stored in a Paul ion trap showed the IRMPD features of substituent protonated nitrosobenzene, the most stable among conceivable [C(6)H(6)NO](+) isomers according to computations. It is noteworthy that IRMPD is successful in allowing a discrimination between isomeric [C(6)H(6)NO](+) species, whereas high-energy collision-induced dissociation fails in this task. The [benzene,NO](+) pi-complex is characterized by IRMPD spectroscopy as an exemplary noncovalent ionic adduct between two important biomolecular moieties.
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Affiliation(s)
- Barbara Chiavarino
- Dipartimento di Studi di Chimica e Tecnologia delle Sostanze Biologicamente Attive, Università di Roma La Sapienza, I-00185 Roma, Italy
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34
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Chiavarino B, Crestoni ME, Fornarini S, Dopfer O, Lemaire J, Maître P. IR Spectroscopic Features of Gaseous C7H7O+ Ions: Benzylium versus Tropylium Ion Structures. J Phys Chem A 2006; 110:9352-60. [PMID: 16869683 DOI: 10.1021/jp0628380] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Gaseous [C7H7O]+ ions have been formed by protonation of benzaldehyde or tropone (2,4,6-cycloheptatrienone) in the cell of an FT-ICR mass spectrometer using C2H5(+) as a Brønsted acid. The so-formed species have been assayed by infrared multiphoton dissociation (IRMPD) using the free electron laser (FEL) at the CLIO (Centre Laser Infrarouge Orsay) facility. The IRMPD features are quite distinct for ions from the two different precursors, pointing to two different isomers. A number of potential structures for [C7H7O]+ ions have been optimized at the B3LYP/6-31+G(d,p) level of theory, and their relative energies and IR spectra are reported. On this basis, the IRMPD spectra of [C7H7O]+ ions are found to display features characteristic of O-protonated species, with no evidence of any further skeletal rearrangements. The so-formed ions are thus hydroxy-substituted benzylium and tropylium ions, respectively, representative members of the benzylium/tropylium ion family. The IRMPD assay using the FEL laser light has allowed their unambiguous discrimination where other mass spectrometric techniques have yielded a less conclusive answer.
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Affiliation(s)
- Barbara Chiavarino
- Dipartimento di Studi di Chimica e Tecnologia delle Sostanze Biologicamente Attive, Università di Roma La Sapienza, P.le A. Moro 5, I-00185 Roma, Italy.
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35
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Enomoto S, Miyazaki M, Fujii A, Mikami N. Electronic and Infrared Spectroscopy of [Benzene−(Methanol)n]+ (n = 1−6). J Phys Chem A 2005; 109:9471-80. [PMID: 16866396 DOI: 10.1021/jp052252y] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The microsolvation structure of the [benzene-(methanol)(n)](+) (n = 1-6) clusters was analyzed by electronic and infrared spectroscopy. For the n = 1 and 2 clusters, further spectroscopic investigation was carried out by Ar atom attachment, which has been know as a useful technique for discriminating isomers of the clusters. The coexistence of multiple isomers was confirmed for the n = 1 and 2 clusters, and remarkably, preferential production of the specific isomers occurred in the Ar attachment. The most stable isomer of the n = 1 cluster was suggested to be of the "on-ring" structure where the nonbonding electrons of the methanol moiety directly interact with the pi orbital of the benzene cation moiety. This is a sharp contrast to [benzene-(H(2)O)(1)](+), exhibiting the "side" structure, where the water moiety is bound to the C-H sites of the benzene cation moiety. The structure of the n = 2 cluster was discussed with the help of density functional theory calculations. Spectral signatures of the intracluster proton-transfer reaction were found for n > or = 5. The intracluster electron-transfer reaction leading to the (methanol)(m)()(+) fragment was also seen upon vibrational and electronic excitation of n > or = 4.
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Affiliation(s)
- Satoko Enomoto
- Department of Chemistry, Graduate School of Science,Tohoku University, Sendai 980-8578, Japan
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36
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Solcà N, Dopfer O. Hydrogen-Bonded Networks in Ethanol Proton Wires: IR Spectra of (EtOH)qH+−Ln Clusters (L = Ar/N2, q ≤ 4, n ≤ 5). J Phys Chem A 2005; 109:6174-86. [PMID: 16833957 DOI: 10.1021/jp0514776] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Isolated and microsolvated protonated ethanol clusters, (EtOH)qH+-Ln with L = Ar and N2, are characterized by infrared photodissociation (IRPD) spectroscopy in the 3 microm range and quantum chemical calculations. For comparison, also the spectrum of the protonated methanol dimer, (MeOH)2H+, is presented. The IRPD spectra carry the signature of H-bonded (EtOH)qH+ chain structures, in which the excess proton is either strongly localized on one or (nearly) equally shared between two EtOH molecules, corresponding to Eigen-type ion cores (EtOH2+ for q = 1, 3) or Zundel-type ion cores (EtOH-H+-HOEt for q = 2, 4), respectively. In contrast to neutral (EtOH)q clusters, no cyclic (EtOH)qH+ isomers are detected in the size range investigated (q < or = 4), indicative of the substantial impact of the excess proton on the properties of the H-bonded ethanol network. The acidity of the two terminal OH groups in the (EtOH)qH+ chains decreases with the length of the chain (q). Comparison between (ROH)qH+ with R = CH3 and C2H5 shows that the acidity of the terminal O-H groups increases with the length of the aliphatic rest (R). The most stable (EtOH)qH+-Ln clusters with n < or = 2 feature intermolecular H-bonds between the inert ligands and the two available terminal OH groups of the (EtOH)qH+ chain. Asymmetric microsolvation of (EtOH)qH+ with q = 2 and 4 promotes a switch from Zundel-type to Eigen-type cores, demonstrating that the fundamental structural motif of the (EtOH)qH+ proton wire sensitively depends on the environment. The strength of the H-bonds between L and (EtOH)qH+ is shown to provide a rather sensitive probe of the acidity of the terminal OH groups.
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Affiliation(s)
- Nicola Solcà
- Institute for Physical Chemistry, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany
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37
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Andrei HS, Solcà N, Dopfer O. Interaction of Ionic Biomolecular Building Blocks with Nonpolar Solvents: Acidity of the Imidazole Cation (Im+) Probed by IR Spectra of Im+−Ln Complexes (L = Ar, N2; n ≤ 3). J Phys Chem A 2005; 109:3598-607. [PMID: 16839026 DOI: 10.1021/jp0441487] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The intermolecular interaction between the imidazole cation (Im+ = C3N2H4+) and nonpolar ligands is characterized in the ground electronic state by infrared photodissociation (IRPD) spectroscopy of size-selected Im+-Ln complexes (L = Ar, N2) and quantum chemical calculations performed at the UMP2/6-311G(2df,2pd) and UB3LYP/6-311G(2df,2pd) levels of theory. The complexes are created in an electron impact cluster ion source, which predominantly produces the most stable isomers of a given cluster ion. The analysis of the size-dependent frequency shifts of both the N-H and the C-H stretch vibrations and the photofragmentation branching ratios provides valuable information about the stepwise microsolvation of Im+ in a nonpolar hydrophobic environment, including the formation of structural isomers, the competition between various intermolecular binding motifs (H-bonding and pi-bonding) and their interaction energies, and the acidity of both the CH and NH protons. In line with the calculations, the IRPD spectra show that the most stable Im+-L dimers feature planar H-bound equilibrium structures with nearly linear H-bonds of L to the acidic NH group of Im+. Further solvation occurs at the aromatic ring of Im+ via the formation of intermolecular pi-bonds. Comparison with neutral Im-Ar demonstrates the drastic effect of ionization on the topology of the intermolecular potential, in particular in the preferred aromatic substrate-nonpolar recognition motif, which changes from pi-bonding to H-bonding. .
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Affiliation(s)
- Horia-Sorin Andrei
- Institut für Physikalische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany
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38
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Guchhait N, Banerjee S, Chakraborty A, Nath D, Patwari Naresh G, Chowdhury M. Structure of hydrated clusters of tetrahydroisoquinoline [THIQ–(H2O)n=1,3] investigated by jet spectroscopy. J Chem Phys 2004; 120:9514-23. [PMID: 15267963 DOI: 10.1063/1.1711810] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
The hydrated clusters of tetrahydroisoquinoline have been investigated by laser-induced fluorescence (LIF), UV-UV hole burning, and IR-UV double-resonance spectroscopy in a seeded supersonic jet. Clusters of different sizes and isomeric structures have different 0-0 transitions (origins) in the LIF spectrum. UV-UV hole burning spectroscopy has been used to identify different cluster species and their vibrational modes. The structures of the clusters have been predicted by comparing the observed OH and NH frequencies in the IR-UV double-resonance spectra with the results calculated at different levels of sophistication. It is found that the water molecules form linear and six- and eight-membered cyclic H-bonded structures at the nitrogen center of 1:1, 1:2, and 1:3 clusters, respectively.
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Affiliation(s)
- Nikhil Guchhait
- Department of Chemistry, Calcutta University, Kolkata 700 009, India
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39
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Andrei HS, Solcà N, Dopfer O. Ionization-induced switch in aromatic molecule–nonpolar ligand recognition: Acidity of 1-naphthol+(1-Np+) rotamers probed by IR spectra of 1-Np+–Lncomplexes (L = Ar/N2, n ≤ 5). Phys Chem Chem Phys 2004. [DOI: 10.1039/b403970j] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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40
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Solcà N, Dopfer O. Prototype Microsolvation of Aromatic Hydrocarbon Cations by Polar Ligands: IR Spectra of Benzene+−Ln Clusters (L = H2O, CH3OH). J Phys Chem A 2003. [DOI: 10.1021/jp022286v] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicola Solcà
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
| | - Otto Dopfer
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
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41
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Honda M, Fujii A, Fujimaki E, Ebata T, Mikami N. NH Stretching Vibrations of Jet-Cooled Aniline and Its Derivatives in the Neutral and Cationic Ground States. J Phys Chem A 2003. [DOI: 10.1021/jp022504k] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Masahiro Honda
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Eiji Fujimaki
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Takayuki Ebata
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Naohiko Mikami
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
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Satink RG, Meijer G, von Helden G. Infrared gas phase absorption spectra of neutral and cationic toluene–argon complexes. Chem Phys Lett 2003. [DOI: 10.1016/s0009-2614(03)00307-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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43
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IR spectra of para-substituted phenol+–Ar cations: effect of halogenation on the intermolecular potential and O–H bond strength. Chem Phys Lett 2003. [DOI: 10.1016/s0009-2614(02)01929-2] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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44
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Inokuchi Y, Ohashi K, Sekiya H, Nishi N. Positive charge distribution in (benzene)1(toleune)2+ and (benzene)2(toluene)1+ studied by photodissociation spectroscopy. J Chem Phys 2002. [DOI: 10.1063/1.1521126] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
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45
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Fujii A, Ebata T, Mikami N. An Infrared Study of π-Hydrogen Bonds in Micro-solvated Phenol: OH Stretching Vibrations of Phenol−X (X = C6H6, C2H4, and C2H2) Clusters in the Neutral and Cationic Ground States. J Phys Chem A 2002. [DOI: 10.1021/jp0208992] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Asuka Fujii
- Department of Chemistry, Graduate School of Sciences, Tohoku University, Sendai 980-8578, Japan
| | - Takayuki Ebata
- Department of Chemistry, Graduate School of Sciences, Tohoku University, Sendai 980-8578, Japan
| | - Naohiko Mikami
- Department of Chemistry, Graduate School of Sciences, Tohoku University, Sendai 980-8578, Japan
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46
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Piracha N, Nakanaga T. Infrared spectroscopy of aniline–Ne clusters and the corresponding cluster cations in the NH2-stretching vibration region. J Mol Struct 2002. [DOI: 10.1016/s0022-2860(02)00066-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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47
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Dopfer O, Roth D, Maier JP. Infrared spectra of C(3)H(3)(+)-N(2) dimers: identification of proton-bound c-C(3)H(3)(+)-N(2) and H(2)CCCH(+)-N(2) isomers. J Am Chem Soc 2002; 124:494-502. [PMID: 11792222 DOI: 10.1021/ja012004p] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Mid-infrared photodissociation spectra of mass selected C(3)H(3)(+)-N(2) ionic complexes are obtained in the vicinity of the C-H stretch fundamentals (2970-3370 cm(-1)). The C(3)H(3)(+)-N(2) dimers are produced in an electron impact cluster ion source by supersonically expanding a gas mixture of allene, N(2), and Ar. Rovibrational analysis of the spectra demonstrates that (at least) two C(3)H(3)(+) isomers are produced in the employed ion source, namely the cyclopropenyl (c-C(3)H(3)(+)) and the propargyl (H(2)CCCH(+)) cations. This observation is the first spectroscopic detection of the important c-C(3)H(3)(+) ion in the gas phase. Both C(3)H(3)(+) cations form intermolecular proton bonds to the N(2) ligand with a linear -C-H...N-N configuration, leading to planar C(3)H(3)(+)-N(2) structures with C(2v) symmetry. The strongest absorption of the H(2)CCCH(+)-N(2) dimer in the spectral range investigated corresponds to the acetylenic C-H stretch fundamental (v(1) = 3139 cm(-1)), which experiences a large red shift upon N(2) complexation (Delta(v1) approximately -180 cm(-1)). For c-C(3)H(3)(+)-N(2), the strongly IR active degenerate antisymmetric stretch vibration (v4)) of c-C(3)H(3)(+) is split into two components upon complexation with N(2): v4)(a(1)) = 3094 cm(-1) and v4)(b(2)) = 3129 cm(-1). These values bracket the yet unknown v4) frequency of free c-C(3)H(3)(+) in the gas phase, which is estimated as 3125 +/- 4 cm(-1) by comparison with theoretical data. Analysis of the nuclear spin statistical weights and A rotational constants of H(2)CCCH(+)-N(2) and c-C(3)H(3)(+)-N(2) provide for the first time high-resolution spectroscopic evidence that H(2)CCCH(+) and c-C(3)H(3)(+) are planar ions with C(2v) and D(3h) symmetry, respectively. Ab initio calculations at the MP2(full)/6-311G(2df,2pd) level confirm the given assignments and predict intermolecular separations of R(e) = 2.1772 and 2.0916 A and binding energies of D(e) = 1227 and 1373 cm(-1) for the H-bound c-C(3)H(3)(+)-N(2) and H(2)CCCH(+)-N(2) dimers, respectively.
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Affiliation(s)
- Otto Dopfer
- Institute for Physical Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland.
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48
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Infrared spectroscopy of the benzene–H2O cluster cation: experimental study on the drastic structural change upon photoionization. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)01239-8] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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49
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Sakai M, Daigoku K, Ishiuchi SI, Saeki M, Hashimoto K, Fujii M. Structures of Carbazole−(H2O)n (n = 1−3) Clusters Studied by IR Dip Spectroscopy and a Quantum Chemical Calculation. J Phys Chem A 2001. [DOI: 10.1021/jp012218t] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Makoto Sakai
- Institute for Molecular Science/Graduate School for Advanced Study, Okazaki 444−8585, Japan, and Computer Center & Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University/ACT-JST, Hachioji 192-0397, Japan
| | - Kota Daigoku
- Institute for Molecular Science/Graduate School for Advanced Study, Okazaki 444−8585, Japan, and Computer Center & Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University/ACT-JST, Hachioji 192-0397, Japan
| | - Shun-ichi Ishiuchi
- Institute for Molecular Science/Graduate School for Advanced Study, Okazaki 444−8585, Japan, and Computer Center & Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University/ACT-JST, Hachioji 192-0397, Japan
| | - Morihisa Saeki
- Institute for Molecular Science/Graduate School for Advanced Study, Okazaki 444−8585, Japan, and Computer Center & Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University/ACT-JST, Hachioji 192-0397, Japan
| | - Kenro Hashimoto
- Institute for Molecular Science/Graduate School for Advanced Study, Okazaki 444−8585, Japan, and Computer Center & Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University/ACT-JST, Hachioji 192-0397, Japan
| | - Masaaki Fujii
- Institute for Molecular Science/Graduate School for Advanced Study, Okazaki 444−8585, Japan, and Computer Center & Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University/ACT-JST, Hachioji 192-0397, Japan
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50
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Protonation of aromatic molecules: competition between ring and oxygen protonation of phenol (Ph) revealed by IR spectra of PhH+–Arn. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)00556-5] [Citation(s) in RCA: 81] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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