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For: Otto F. Multi-layer Potfit: An accurate potential representation for efficient high-dimensional quantum dynamics. J Chem Phys 2014;140:014106. [DOI: 10.1063/1.4856135] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Singh K, Lee KH, Peláez D, Bande A. Accelerating wavepacket propagation with machine learning. J Comput Chem 2024;45:2360-2373. [PMID: 39031712 DOI: 10.1002/jcc.27443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 05/13/2024] [Accepted: 05/16/2024] [Indexed: 07/22/2024]
2
Dwivedi A, Lopez-Ruiz MA, Iyengar SS. Resource Optimization for Quantum Dynamics with Tensor Networks: Quantum and Classical Algorithms. J Phys Chem A 2024;128:6774-6797. [PMID: 39101545 DOI: 10.1021/acs.jpca.4c03407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/06/2024]
3
Li W, Ren J, Yang H, Wang H, Shuai Z. Optimal tree tensor network operators for tensor network simulations: Applications to open quantum systems. J Chem Phys 2024;161:054116. [PMID: 39105557 DOI: 10.1063/5.0218773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 07/17/2024] [Indexed: 08/07/2024]  Open
4
Ellerbrock R, Johnson KG, Seritan S, Hoppe H, Zhang JH, Lenzen T, Weike T, Manthe U, Martínez TJ. QuTree: A tree tensor network package. J Chem Phys 2024;160:112501. [PMID: 38497471 DOI: 10.1063/5.0180233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Accepted: 02/20/2024] [Indexed: 03/19/2024]  Open
5
Tajouo Tela H, Quintas-Sánchez E, Dubernet ML, Scribano Y, Dawes R, Gatti F, Ndengué S. Rovibrational states calculations of the H2O-HCN heterodimer with the multiconfiguration time dependent Hartree method. Phys Chem Chem Phys 2023;25:31813-31824. [PMID: 37966067 DOI: 10.1039/d3cp03225f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
6
Ashani MN, Huang Q, Flowers AM, Brown A, Aerts A, Otero-de-la-Roza A, DiLabio GA. Accurate Potential Energy Surfaces Using Atom-Centered Potentials and Minimal High-Level Data. J Phys Chem A 2023;127:8015-8024. [PMID: 37712536 DOI: 10.1021/acs.jpca.3c04558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/16/2023]
7
Iyengar SS, Kumar A, Saha D, Sabry A. Synthesis of Hidden Subgroup Quantum Algorithms and Quantum Chemical Dynamics. J Chem Theory Comput 2023;19:6082-6092. [PMID: 37703187 DOI: 10.1021/acs.jctc.3c00404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2023]
8
Schneider M, Born D, Kästner J, Rauhut G. Positioning of grid points for spanning potential energy surfaces-How much effort is really needed? J Chem Phys 2023;158:144118. [PMID: 37061506 DOI: 10.1063/5.0146020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2023]  Open
9
Nadoveza N, Panadés-Barrueta RL, Shi L, Gatti F, Peláez D. Analytical high-dimensional operators in canonical polyadic finite basis representation (CP-FBR). J Chem Phys 2023;158:114109. [PMID: 36948837 DOI: 10.1063/5.0139224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]  Open
10
Kumar A, DeGregorio N, Ricard T, Iyengar SS. Graph-Theoretic Molecular Fragmentation for Potential Surfaces Leads Naturally to a Tensor Network Form and Allows Accurate and Efficient Quantum Nuclear Dynamics. J Chem Theory Comput 2022;18:7243-7259. [PMID: 36332133 DOI: 10.1021/acs.jctc.2c00484] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
11
Song Q, Zhang X, Peláez D, Meng Q. Direct Canonical-Polyadic-Decomposition of the Potential Energy Surface from Discrete Data by Decoupled Gaussian Process Regression. J Phys Chem Lett 2022;13:11128-11135. [PMID: 36442084 DOI: 10.1021/acs.jpclett.2c03080] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
12
Schröder M, Gatti F, Lauvergnat D, Meyer HD, Vendrell O. The coupling of the hydrated proton to its first solvation shell. Nat Commun 2022;13:6170. [PMID: 36257946 PMCID: PMC9579203 DOI: 10.1038/s41467-022-33650-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2022] [Accepted: 09/28/2022] [Indexed: 11/30/2022]  Open
13
Zhu X, Iyengar SS. Graph Theoretic Molecular Fragmentation for Multidimensional Potential Energy Surfaces Yield an Adaptive and General Transfer Machine Learning Protocol. J Chem Theory Comput 2022;18:5125-5144. [PMID: 35994592 DOI: 10.1021/acs.jctc.1c01241] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
14
Han S, Schröder M, Gatti F, Meyer HD, Lauvergnat D, Yarkony DR, Guo H. Representation of Diabatic Potential Energy Matrices for Multiconfiguration Time-Dependent Hartree Treatments of High-Dimensional Nonadiabatic Photodissociation Dynamics. J Chem Theory Comput 2022;18:4627-4638. [PMID: 35839299 DOI: 10.1021/acs.jctc.2c00370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
15
Aerts A, Schaefer MR, Brown A. Adaptive Fitting of Potential Energy Surfaces of Small to Medium-Sized Molecules in Sum-of-Product Form: Application to Vibrational Spectroscopy. J Chem Phys 2022;156:164106. [DOI: 10.1063/5.0089570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Ellerbrock R, Manthe U. A non-hierarchical correlation discrete variable representation. J Chem Phys 2022;156:134107. [PMID: 35395891 DOI: 10.1063/5.0088509] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
17
Manzhos S, Ihara M. Computational vibrational spectroscopy of molecule-surface interactions: what is still difficult and what can be done about it. Phys Chem Chem Phys 2022;24:15158-15172. [DOI: 10.1039/d2cp01389d] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
18
Kumar A, DeGregorio N, Iyengar SS. Graph-Theory-Based Molecular Fragmentation for Efficient and Accurate Potential Surface Calculations in Multiple Dimensions. J Chem Theory Comput 2021;17:6671-6690. [PMID: 34623129 DOI: 10.1021/acs.jctc.1c00065] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
19
Rassolov V, Garashchuk S. Local Measure of Quantum Effects in Quantum Dynamics. J Phys Chem A 2021;125:4653-4667. [PMID: 34014096 DOI: 10.1021/acs.jpca.1c02533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
20
Christopoulou G, Freibert A, Worth GA. Improved algorithm for the direct dynamics variational multi-configurational Gaussian method. J Chem Phys 2021;154:124127. [PMID: 33810697 DOI: 10.1063/5.0043720] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Zhao B, Manthe U. Direct product-type grid representations for angular coordinates in extended space and their application in the MCTDH approach. J Chem Phys 2021;154:104115. [PMID: 33722051 DOI: 10.1063/5.0045054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Sinha S, Saalfrank P. “Inverted” CO molecules on NaCl(100): a quantum mechanical study. Phys Chem Chem Phys 2021;23:7860-7874. [DOI: 10.1039/d0cp05198e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
23
Panadés-Barrueta RL, Peláez D. Low-rank sum-of-products finite-basis-representation (SOP-FBR) of potential energy surfaces. J Chem Phys 2020;153:234110. [PMID: 33353311 DOI: 10.1063/5.0027143] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
24
Ren J, Li W, Jiang T, Shuai Z. A general automatic method for optimal construction of matrix product operators using bipartite graph theory. J Chem Phys 2020;153:084118. [PMID: 32872857 DOI: 10.1063/5.0018149] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
25
Schröder M. Transforming high-dimensional potential energy surfaces into a canonical polyadic decomposition using Monte Carlo methods. J Chem Phys 2020;152:024108. [DOI: 10.1063/1.5140085] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
26
DeGregorio N, Iyengar SS. Challenges in constructing accurate methods for hydrogen transfer reactions in large biological assemblies: rare events sampling for mechanistic discovery and tensor networks for quantum nuclear effects. Faraday Discuss 2020;221:379-405. [DOI: 10.1039/c9fd00071b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
27
Larsson HR. Computing vibrational eigenstates with tree tensor network states (TTNS). J Chem Phys 2019;151:204102. [DOI: 10.1063/1.5130390] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
28
Wodraszka R, Carrington T. A pruned collocation-based multiconfiguration time-dependent Hartree approach using a Smolyak grid for solving the Schrödinger equation with a general potential energy surface. J Chem Phys 2019;150:154108. [DOI: 10.1063/1.5093317] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
29
DeGregorio N, Iyengar SS. Adaptive Dimensional Decoupling for Compression of Quantum Nuclear Wave Functions and Efficient Potential Energy Surface Representations through Tensor Network Decomposition. J Chem Theory Comput 2019;15:2780-2796. [DOI: 10.1021/acs.jctc.8b01113] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
30
Intermolecular rovibrational bound states of H2O H2 dimer from a MultiConfiguration Time Dependent Hartree approach. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2018.11.035] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
31
Dawes R, Quintas‐Sánchez E. THE CONSTRUCTION OF AB INITIO‐BASED POTENTIAL ENERGY SURFACES. REVIEWS IN COMPUTATIONAL CHEMISTRY 2018. [DOI: 10.1002/9781119518068.ch5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
32
Ziegler B, Rauhut G. Rigorous use of symmetry within the construction of multidimensional potential energy surfaces. J Chem Phys 2018;149:164110. [DOI: 10.1063/1.5047912] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
33
Otto F, Chiang YC, Peláez D. Accuracy of Potfit-based potential representations and its impact on the performance of (ML-)MCTDH. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2017.11.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
34
Wodraszka R, Carrington T. A new collocation-based multi-configuration time-dependent Hartree (MCTDH) approach for solving the Schrödinger equation with a general potential energy surface. J Chem Phys 2018;148:044115. [DOI: 10.1063/1.5018793] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Schröder M, Meyer HD. Transforming high-dimensional potential energy surfaces into sum-of-products form using Monte Carlo methods. J Chem Phys 2017;147:064105. [DOI: 10.1063/1.4991851] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
36
Brown A, Pradhan E. Fitting potential energy surfaces to sum-of-products form with neural networks using exponential neurons. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2017. [DOI: 10.1142/s0219633617300014] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
37
Larsson HR, Tannor DJ. Dynamical pruning of the multiconfiguration time-dependent Hartree (DP-MCTDH) method: An efficient approach for multidimensional quantum dynamics. J Chem Phys 2017;147:044103. [DOI: 10.1063/1.4993219] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
38
Manthe U. Wavepacket dynamics and the multi-configurational time-dependent Hartree approach. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2017;29:253001. [PMID: 28430111 DOI: 10.1088/1361-648x/aa6e96] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
39
Wodraszka R, Carrington T. Systematically expanding nondirect product bases within the pruned multi-configuration time-dependent Hartree (MCTDH) method: A comparison with multi-layer MCTDH. J Chem Phys 2017;146:194105. [PMID: 28527461 DOI: 10.1063/1.4983281] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
40
Rai P, Sargsyan K, Najm H, Hermes MR, Hirata S. Low-rank canonical-tensor decomposition of potential energy surfaces: application to grid-based diagrammatic vibrational Green's function theory. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1288937] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
41
Pradhan E, Brown A. A ground state potential energy surface for HONO based on a neural network with exponential fitting functions. Phys Chem Chem Phys 2017;19:22272-22281. [DOI: 10.1039/c7cp04010e] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
42
Larsson HR, Hartke B, Tannor DJ. Efficient molecular quantum dynamics in coordinate and phase space using pruned bases. J Chem Phys 2016;145:204108. [DOI: 10.1063/1.4967432] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
43
Alborzpour JP, Tew DP, Habershon S. Efficient and accurate evaluation of potential energy matrix elements for quantum dynamics using Gaussian process regression. J Chem Phys 2016;145:174112. [DOI: 10.1063/1.4964902] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
44
Pradhan E, Brown A. Vibrational energies for HFCO using a neural network sum of exponentials potential energy surface. J Chem Phys 2016;144:174305. [DOI: 10.1063/1.4948440] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
45
Ziegler B, Rauhut G. Efficient generation of sum-of-products representations of high-dimensional potential energy surfaces based on multimode expansions. J Chem Phys 2016;144:114114. [DOI: 10.1063/1.4943985] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
46
Gu B, Garashchuk S. Quantum Dynamics with Gaussian Bases Defined by the Quantum Trajectories. J Phys Chem A 2016;120:3023-31. [DOI: 10.1021/acs.jpca.5b10029] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
47
Thomas PS, Carrington T. Using Nested Contractions and a Hierarchical Tensor Format To Compute Vibrational Spectra of Molecules with Seven Atoms. J Phys Chem A 2015;119:13074-91. [DOI: 10.1021/acs.jpca.5b10015] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
48
Baranov V, Oseledets I. Fitting high-dimensional potential energy surface using active subspace and tensor train (AS+TT) method. J Chem Phys 2015;143:174107. [DOI: 10.1063/1.4935017] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
49
Avila G, Carrington T. Using multi-dimensional Smolyak interpolation to make a sum-of-products potential. J Chem Phys 2015;143:044106. [DOI: 10.1063/1.4926651] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
50
Wang H. Multilayer Multiconfiguration Time-Dependent Hartree Theory. J Phys Chem A 2015;119:7951-65. [PMID: 26020459 DOI: 10.1021/acs.jpca.5b03256] [Citation(s) in RCA: 133] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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