1
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Aucar JJ, Melo JI, Maldonado AF. Electric Field Gradient in Chiral and Tetrahedral Molecules within High-Order LRESC Formalism. J Phys Chem A 2024; 128:5089-5099. [PMID: 38725128 DOI: 10.1021/acs.jpca.4c00426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2024]
Abstract
In this work, we present the electric field gradient (EFG) given by the linear response elimination of the small component (LRESC) scheme up to the 1/c4 order (c is the speed of light in vacuum) in CHFClX (X = Br, I, At) chiral molecules, together with CHF2Br and CH2FX (X = Br, I, At) tetrahedral systems. The former could be good candidates for further parity violation studies, especially when heavy atoms are surrounding. In this context, the LRESC scheme demonstrates effective applicability to large tetrahedral and chiral molecules that incorporate heavy elements, with relativistic effects playing a crucial role. The LRESC results of EFG exhibit an excellent agreement with those calculated at the four-component level, giving differences of only hundredths order in a.u. (atomic units) for the bromine nucleus and less than 0.1 a.u. for the iodine nucleus. Regarding the other nuclei, for the chiral molecules, there is a heavy atom effect on the light atom (HALA) for chlorine and fluorine atoms as the substituent halogen atom becomes heavier. Furthermore, the electronic part of the EFG for the central carbon and the fluorine nuclei presents an important dependence with the environment in the molecules under study. With accurate calculations of the EFG and tabulated nuclear quadrupole moment, the nuclear quadrupole coupling constant is obtained within the LRESC scheme, including for the first time correlation effects on the spin-dependent corrections with this methodology, providing results close to the experimental ones for Cl, Br, and I atoms. At the Hartree-Fock level, the differences are around 6% for Br and I nuclei, and at the density functional theory level with the LDA and PBE0 functionals, the differences are no more than 2%.
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Affiliation(s)
- Juan J Aucar
- Physics Department, Natural and Exact Science Faculty, National Northeastern University of Argentina, Avda Libertad 5460, W3404AAS Corrientes, Argentina
- Institute for Modelling and Innovative Technology, IMIT (CONICET-UNNE), Avda Libertad 5460, W3404AAS Corrientes, Argentina
| | - Juan I Melo
- CONICET - Universidad de Buenos Aires, Instituto de Física de Buenos Aires (IFIBA), C1428EGA Buenos Aires, Argentina
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, C1428EGA Buenos Aires, Argentina
| | - Alejandro F Maldonado
- Institute for Modelling and Innovative Technology, IMIT (CONICET-UNNE), Avda Libertad 5460, W3404AAS Corrientes, Argentina
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2
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Catone D, Castrovilli MC, Nicolanti F, Satta M, Cartoni A. Formation of H 3O + and OH by CO 2 and N 2O trace gases in the atmospheric environment. Phys Chem Chem Phys 2023; 25:25619-25628. [PMID: 37721164 DOI: 10.1039/d3cp02427j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
The impact of cosmic rays' energetic subatomic particles on climate and global warming is still controversial and under debate. Cosmic rays produce ions that can trigger fast reactions affecting chemical networks in the troposphere and stratosphere especially when a large amount of relevant trace gases such as carbon dioxide, methane, sulfur dioxide and water are injected by volcanic eruptions. This work focuses on synchrotron experiments and an ab initio theoretical study of the ion chemistry of carbon dioxide and nitrous oxide radical cations reacting with water. These molecules catalyze a fast exothermic formation of hydronium ions H3O+ and the hydroxyl radical OH, the main oxidant in the atmosphere. Moreover, theoretical calculations demonstrate that at the end of the catalytic cycle, CO2 and N2O are produced vibrationally excited and subsequently they quench in the microsecond time scale by collision with the surrounding atmospheric molecules at the pressure and temperature of the upper-troposphere/stratosphere. The chemistry involved in these reactions has a strong impact on the oxidant capacity of the atmosphere, on the sulfate aerosol production, on the cloud formation and eventually on the chemical networks controlling climate and global warming models.
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Affiliation(s)
- Daniele Catone
- Istituto di Struttura della Materia - CNR (ISM-CNR), Area della Ricerca di Roma 2, Via del Fosso del Cavaliere 100, 00133, Rome, Italy
| | - Mattea Carmen Castrovilli
- Istituto di Struttura della Materia - CNR (ISM-CNR), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Francesca Nicolanti
- Department of Physics, Sapienza University of Rome, P. le Aldo Moro 5, Rome, 00185, Italy
| | - Mauro Satta
- Institute for the Study of Nanostructured Materials-CNR (ISMN-CNR), Department of Chemistry, Sapienza University of Rome, P. le Aldo Moro 5, Rome, 00185, Italy.
- Department of Chemistry, Sapienza University of Rome, P. le Aldo Moro 5, Rome, 00185, Italy.
| | - Antonella Cartoni
- Department of Chemistry, Sapienza University of Rome, P. le Aldo Moro 5, Rome, 00185, Italy.
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3
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Ascenzi D, Erdmann E, Bolognesi P, Avaldi L, Castrovilli MC, Thissen R, Romanzin C, Alcaraz C, Rabadan I, Mendez L, Díaz-Tendero S, Cartoni A. H 2O˙ + and OH + reactivity versus furan: experimental low energy absolute cross sections for modeling radiation damage. Phys Chem Chem Phys 2023; 25:24643-24656. [PMID: 37665608 DOI: 10.1039/d3cp02772d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2023]
Abstract
Radiotherapy is one of the most widespread and efficient strategies to fight malignant tumors. Despite its broad application, the mechanisms of radiation-DNA interaction are still under investigation. Theoretical models to predict the effects of a particular delivered dose are still in their infancy due to the difficulty of simulating a real cell environment, as well as the inclusion of a large variety of secondary processes. This work reports the first experimental study of the ion-molecule reactions of the H2O˙+ and OH+ ions, produced by photoionization with synchrotron radiation, with a furan (c-C4H4O) molecule, a template for deoxyribose sugar in DNA. The present experiments, performed as a function of the collision energy of the ions and the tunable photoionization energy, provide key parameters for the theoretical modelling of the effect of radiation dose, like the absolute cross sections for producing protonated furan (furanH+) and a radical cation (furan˙+), the most abundant products, which can amount up to 200 Å2 at very low collision energies (<1.0 eV). The experimental results show that furanH+ is more fragile, indicating how the protonation of the sugar component of the DNA may favor its dissociation with possible major radiosensitizing effects. Moreover, the ring opening of furanH+ isomers and the potential energy surface of the most important fragmentation channels have been explored by molecular dynamics simulations and quantum chemistry calculations. The results show that, in the most stable isomer of furanH+, the ring opening occurs via a low energy pathway with carbon-oxygen bond cleavage, followed by the loss of neutral carbon monoxide and the formation of the allyl cation CH2CHCH2+, which instead is not observed in the fragmentation of furan˙+. At higher energies the ring opening through the carbon-carbon bond is accompanied by the loss of formaldehyde, producing HCCCH2+, the most intense fragment ion detected in the experiments. This work highlights the importance of the secondary processes, like the ion-molecule reactions at low energies in the radiation damage due to their very large cross sections, and it aims to provide benchmark data for the development of suitable models to approach this low collision energy range.
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Affiliation(s)
- Daniela Ascenzi
- Department of Physics, University of Trento, Via Sommarive 14, 38123 Trento, Italy
| | - Ewa Erdmann
- Faculty of Applied Physics and Mathematics, Gdansk University of Technology, Narutowicza 11/12, 80-233 Gdansk, Poland
| | - Paola Bolognesi
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015, Monterotondo, Italy
| | - Lorenzo Avaldi
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015, Monterotondo, Italy
| | - Mattea Carmen Castrovilli
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015, Monterotondo, Italy
| | - Roland Thissen
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, 91405 Orsay, France
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192 Saint Aubin, Gif-sur-Yvette, France
| | - Claire Romanzin
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, 91405 Orsay, France
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192 Saint Aubin, Gif-sur-Yvette, France
| | - Christian Alcaraz
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, 91405 Orsay, France
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192 Saint Aubin, Gif-sur-Yvette, France
| | - Ismanuel Rabadan
- Department of Chemistry, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
| | - Luis Mendez
- Department of Chemistry, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
| | - Sergio Díaz-Tendero
- Department of Chemistry, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
- Institute for Advanced Research in Chemistry (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Antonella Cartoni
- Department of Chemistry, Sapienza University of Rome, P. le Aldo Moro 5, Rome, 00185, Italy.
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015, Monterotondo, Italy
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4
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Perspectives of Gas Phase Ion Chemistry: Spectroscopy and Modeling. CONDENSED MATTER 2022. [DOI: 10.3390/condmat7030046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The study of ions in the gas phase has a long history and has involved both chemists and physicists. The interplay of their competences with the use of very sophisticated commercial and/or homemade instrumentations and theoretical models has improved the knowledge of thermodynamics and kinetics of many chemical reactions, even if still many stages of these processes need to be fully understood. The new technologies and the novel free-electron laser facilities based on plasma acceleration open new opportunities to investigate the chemical reactions in some unrevealed fundamental aspects. The synchrotron light source can be put beside the FELs, and by mass spectrometric techniques and spectroscopies coupled with versatile ion sources it is possible to really change the state of the art of the ion chemistry in different areas such as atmospheric and astro chemistry, plasma chemistry, biophysics, and interstellar medium (ISM). In this manuscript we review the works performed by a joint combination of the experimental studies of ion–molecule reactions with synchrotron radiation and theoretical models adapted and developed to the experimental evidence. The review concludes with the perspectives of ion–molecule reactions by using FEL instrumentations as well as pump probe measurements and the initial attempt in the development of more realistic theoretical models for the prospective improvement of our predictive capability.
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5
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Satta M, Catone D, Castrovilli MC, Bolognesi P, Avaldi L, Zema N, Cartoni A. Ion Chemistry of Carbon Dioxide in Nonthermal Reaction with Molecular Hydrogen. J Phys Chem A 2022; 126:3463-3471. [PMID: 35638704 PMCID: PMC9189832 DOI: 10.1021/acs.jpca.2c01695] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The exothermic hydrogen transfer from H2 to CO2·+ leading to H and HCO2+ is investigated in a combined experimental and theoretical work. The experimental mass/charge ratios of the ionic product (HCO2+) and the ionic reactant (CO2·+) are recorded as a function of the photoionization energy of the synchrotron radiation. Theoretical density functional calculations and variational transition state theory are employed and adapted to analyze the energetic and the kinetics of the reaction, which turns out to be barrierless and with nonthermal rate coefficients controlled by nonstatistical processes. This study aims to understand the mechanisms and energetics that drive the reactivity of the elementary reaction of CO2·+ with H2 in different processes.
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Affiliation(s)
- Mauro Satta
- Department of Chemistry, Institute of the Study of Nanostructured Materials-CNR (ISMN-CNR), Sapienza University of Rome, P. le Aldo Moro 5, Rome 00185, Italy
| | - Daniele Catone
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Tor Vergata, Via del Fosso del Cavaliere, Rome 00133, Italy
| | - Mattea Carmen Castrovilli
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, Monterotondo 00015, Italy
| | - Paola Bolognesi
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, Monterotondo 00015, Italy
| | - Lorenzo Avaldi
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, Monterotondo 00015, Italy
| | - Nicola Zema
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Tor Vergata, Via del Fosso del Cavaliere, Rome 00133, Italy
| | - Antonella Cartoni
- Department of Chemistry, Sapienza University of Rome, P. le Aldo Moro 5, Rome 00185, Italy
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6
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Carlini L, Chiarinelli J, Mattioli G, Castrovilli MC, Valentini V, De Stefanis A, Bauer EM, Bolognesi P, Avaldi L. Insights into the Thermally Activated Cyclization Mechanism in a Linear Phenylalanine-Alanine Dipeptide. J Phys Chem B 2022; 126:2968-2978. [PMID: 35438499 PMCID: PMC9059117 DOI: 10.1021/acs.jpcb.1c10736] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
Dipeptides, the prototype
peptides, exist in both linear (l-) and cyclo (c-) structures. Since the
first mass spectrometry experiments, it has been observed that some l-structures may turn into the cyclo ones, likely via a
temperature-induced process. In this work, combining several different
experimental techniques (mass spectrometry, infrared and Raman spectroscopy,
and thermogravimetric analysis) with tight-binding and ab initio simulations,
we provide evidence that, in the case of l-phenylalanyl-l-alanine, an irreversible cyclization mechanism, catalyzed
by water and driven by temperature, occurs in the condensed phase.
This process can be considered as a very efficient strategy to improve
dipeptide stability by turning the comparatively fragile linear structure
into the robust and more stable cyclic one. This mechanism may have
played a role in prebiotic chemistry and can be further exploited
in the preparation of nanomaterials and drugs.
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Affiliation(s)
- Laura Carlini
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Jacopo Chiarinelli
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Giuseppe Mattioli
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Mattea Carmen Castrovilli
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Veronica Valentini
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Adriana De Stefanis
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Elvira Maria Bauer
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Paola Bolognesi
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
| | - Lorenzo Avaldi
- CNR-Istituto di Struttura della Materia (CNR-ISM), Area della Ricerca di Roma 1, Monterotondo Scalo 00015, Italy
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7
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Castrovilli MC, Tempesta E, Cartoni A, Plescia P, Bolognesi P, Chiarinelli J, Calandra P, Cicco N, Verrastro MF, Centonze D, Gullo L, Del Giudice A, Galantini L, Avaldi L. Fabrication of a New, Low-Cost, and Environment-Friendly Laccase-Based Biosensor by Electrospray Immobilization with Unprecedented Reuse and Storage Performances. ACS SUSTAINABLE CHEMISTRY & ENGINEERING 2022; 10:1888-1898. [PMID: 35154910 PMCID: PMC8830555 DOI: 10.1021/acssuschemeng.1c07604] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 01/10/2022] [Indexed: 05/06/2023]
Abstract
The fabrication of enzyme-based biosensors has received much attention for their selectivity and sensitivity. In particular, laccase-based biosensors have attracted a lot of interest for their capacity to detect highly toxic molecules in the environment, becoming essential tools in the fields of white biotechnology and green chemistry. The manufacturing of a new, metal-free, laccase-based biosensor with unprecedented reuse and storage capabilities has been achieved in this work through the application of the electrospray deposition (ESD) methodology as the enzyme immobilization technique. Electrospray ionization (ESI) has been used for ambient soft-landing of laccase enzymes on a carbon substrate, employing sustainable chemistry. This study shows how the ESD technique can be successfully exploited for the fabrication of a new promising environment-friendly electrochemical amperometric laccase-based biosensor, with storage capability up to two months without any particular care and reuse performance up to 63 measurements on the same electrode just prepared and 20 measurements on the one-year-old electrode subjected to redeposition. The laccase-based biosensor has been tested for catechol detection in the linear range 2-100 μM, with a limit of detection of 1.7 μM, without interference from chrome, cadmium, arsenic, and zinc and without any memory effects.
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Affiliation(s)
- Mattea Carmen Castrovilli
- Istituto
di Struttura della Materia-CNR (ISM-CNR), Area della Ricerca di Roma 1, 00015 Monterotondo, Italy
| | - Emanuela Tempesta
- CNR-Institute
of Environmental Geology and Geoengineering (CNR-IGAG), Area della Ricerca Roma1, Via Salaria
km 29.300, 00015 Monterotondo, Italy
| | - Antonella Cartoni
- Department
of Chemistry, Sapienza University, P.le Aldo Moro 5, 00185 Roma, Italy
| | - Paolo Plescia
- CNR-Institute
of Environmental Geology and Geoengineering (CNR-IGAG), Area della Ricerca Roma1, Via Salaria
km 29.300, 00015 Monterotondo, Italy
| | - Paola Bolognesi
- Istituto
di Struttura della Materia-CNR (ISM-CNR), Area della Ricerca di Roma 1, 00015 Monterotondo, Italy
| | - Jacopo Chiarinelli
- Istituto
di Struttura della Materia-CNR (ISM-CNR), Area della Ricerca di Roma 1, 00015 Monterotondo, Italy
| | - Pietro Calandra
- CNR-Institute
for the Study of Nanostructured Materials (CNR-ISMN), Area della Ricerca Roma1, Via Salaria
km 29.300, 00015 Monterotondo, Italy
| | - Nunzia Cicco
- CNR-Institute
of Methodologies for Environmental Analysis (CNR-IMAA), Contrada Santa Loja, Tito Scalo, 85050 Potenza, Italy
| | - Maria Filomena Verrastro
- Istituto
di Struttura della Materia-CNR (ISM-CNR), Contrada Santa Loja, Tito
Scalo 85050, Potenza, Italy
| | - Diego Centonze
- Dipartimento
di Scienze Agrarie, degli Alimenti e dell’Ambiente, Università degli Studi di Foggia, via Napoli, 25, 71122 Foggia, Italy
| | - Ludovica Gullo
- Department
of Chemistry, Sapienza University, P.le Aldo Moro 5, 00185 Roma, Italy
| | | | - Luciano Galantini
- Department
of Chemistry, Sapienza University, P.le Aldo Moro 5, 00185 Roma, Italy
| | - Lorenzo Avaldi
- Istituto
di Struttura della Materia-CNR (ISM-CNR), Area della Ricerca di Roma 1, 00015 Monterotondo, Italy
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8
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Chiarinelli J, Barreiro-Lage D, Bolognesi P, RICHTER R, Zettergren H, Stockett MH, Díaz-Tendero S, Avaldi L. Electron and ion spectroscopy of the cyclo-alanine-alanine dipeptide. Phys Chem Chem Phys 2022; 24:5855-5867. [DOI: 10.1039/d1cp05811h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The VUV photoionisation and photofragmentation of cyclo-alanine-alanine (cAA) has been studiedin a joint experimental and theoretical work. The photoelectron spectrum and the photoelectron-photoion coincidence (PEPICO) measurements, which enable a control...
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9
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Satta M, Casavola AR, Cartoni A, Castrovilli MC, Catone D, Chiarinelli J, Borocci S, Avaldi L, Bolognesi P. Ionization of 2- and 4(5)-Nitroimidazoles Radiosensitizers: A "Kinetic Competition" Between NO 2 and NO Losses. Chemphyschem 2021; 22:2387-2391. [PMID: 34597457 PMCID: PMC9293481 DOI: 10.1002/cphc.202100629] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2021] [Revised: 09/23/2021] [Indexed: 12/27/2022]
Abstract
Nitroimidazoles are a class of chemicals with a remarkable broad spectrum of applications from the production of explosives to the use as radiosensitizers in radiotherapy. The understanding of thedynamics of their fragmentation induced by ionizing sources is of fundamental interest. The goal of this work is to theoretically investigate the kinetic competition between the two most important decomposition channels of 2, 4 and 5‐Nitroimidazole cations: the NO and NO2 losses. The calculated rate constants of the two processes are in very good agreement with the experimental Photoelectron‐Photoion Coincidence (PEPICO) branching ratio. This study solves the intriguing and theoretically unexplained experimental observation that 2‐Nitroimidazole, at variance with the other two regio‐isomers is a source for only NO at low energies (<12.76 eV). This is a key point for biomedical application of the nitroimidazoles, because NO is the vasodilator that favors the reoxigenation of hypoxic tumor tissues.
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Affiliation(s)
- Mauro Satta
- Istituto per lo Studio dei Materiali Nanostrutturati (ISMN-CNR), Dipartimento di Chimica, Università degli studi di Roma La Sapienza, P.le Aldo Moro 5, 00185, Roma, Italy
| | - Anna Rita Casavola
- Istituto di Struttura della Materia (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria Km 29,300, 00016, Monterotondo Scalo (RM), Italy
| | - Antonella Cartoni
- Dipartimento di Chimica, Università degli studi di Roma La Sapienza, Pl.e Aldo Moro 5, 00185, Roma, Italy
| | - Mattea Carmen Castrovilli
- Istituto di Struttura della Materia (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria Km 29,300, 00016, Monterotondo Scalo (RM), Italy
| | - Daniele Catone
- Istituto di Struttura della Materia (ISM-CNR), Area della Ricerca di Roma 2, Via del Fosso del Cavaliere 10, 00133, Roma, Italy
| | - Jacopo Chiarinelli
- Istituto di Struttura della Materia (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria Km 29,300, 00016, Monterotondo Scalo (RM), Italy
| | - Stefano Borocci
- Dipartimento per l'Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, Viterbo, Italy
| | - Lorenzo Avaldi
- Istituto di Struttura della Materia (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria Km 29,300, 00016, Monterotondo Scalo (RM), Italy
| | - Paola Bolognesi
- Istituto di Struttura della Materia (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria Km 29,300, 00016, Monterotondo Scalo (RM), Italy
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10
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Casavola AR, Cartoni A, Castrovilli MC, Borocci S, Bolognesi P, Chiarinelli J, Catone D, Avaldi L. VUV Photofragmentation of Chloroiodomethane: The Iso-CH 2I-Cl and Iso-CH 2Cl-I Radical Cation Formation. J Phys Chem A 2020; 124:7491-7499. [PMID: 32786965 PMCID: PMC8010789 DOI: 10.1021/acs.jpca.0c05754] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
Dihalomethanes
XCH2Y (X and Y = F, Cl, Br, and I) are a class of compounds
involved in several processes leading to the release of halogen atoms,
ozone consumption, and aerosol particle formation. Neutral dihalomethanes
have been largely studied, but chemical physics properties and processes
involving their radical ions, like the pathways of their decomposition,
have not been completely investigated. In this work the photodissociation
dynamics of the ClCH2I molecule has been explored in the
photon energy range 9–21 eV using both VUV rare gas discharge
lamps and synchrotron radiation. The experiments show that, among
the different fragment ions, CH2I+ and CH2Cl+, which correspond to the Cl- and I-losses,
respectively, play a dominant role. The experimental ionization energy
of ClCH2I and the appearance energies of the CH2I+ and CH2Cl+ ions are in agreement
with the theoretical results obtained at the MP2/CCSD(T) level of
theory. Computational investigations have been also performed to study
the isomerization of geminal [ClCH2I]•+ into the iso-chloroiodomethane isomers: [CH2I–Cl]•+ and [CH2Cl–I]•+.
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Affiliation(s)
- Anna Rita Casavola
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015 Monterotondo, Italy
| | - Antonella Cartoni
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015 Monterotondo, Italy.,Department of Chemistry, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy
| | - Mattea Carmen Castrovilli
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015 Monterotondo, Italy
| | - Stefano Borocci
- Department for Innovation in Biological, Agrofood and Forest Systems, University of Tuscia, Viterbo 01100, Italy.,Institute for Biological Systems-CNR (ISB-CNR), Area della Ricerca di Roma 1, Via Salaria, Km 29.500,, 00015 Monterotondo, Italy
| | - Paola Bolognesi
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015 Monterotondo, Italy
| | - Jacopo Chiarinelli
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015 Monterotondo, Italy
| | - Daniele Catone
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Tor Vergata, Via del Fosso del Cavaliere, 00133 Rome, Italy
| | - Lorenzo Avaldi
- Institute of Structure of Matter-CNR (ISM-CNR), Area della Ricerca di Roma 1, Via Salaria km 29.300, 00015 Monterotondo, Italy
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11
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Satta M, Cartoni A, Catone D, Castrovilli MC, Bolognesi P, Zema N, Avaldi L. The Reaction of Sulfur Dioxide Radical Cation with Hydrogen and its Relevance in Solar Geoengineering Models. Chemphyschem 2020; 21:1146-1156. [PMID: 32203633 DOI: 10.1002/cphc.202000194] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 03/23/2020] [Indexed: 11/06/2022]
Abstract
SO2 has been proposed in solar geoengineering as a precursor of H2 SO4 aerosol, a cooling agent active in the stratosphere to contrast climate change. Atmospheric ionization sources can ionize SO2 into excited states of S O 2 · + , which quickly reacts with trace gases in the stratosphere. In this work we explore the reaction of H 2 D 2 with S O 2 · + excited by tunable synchrotron radiation, leading to H S O 2 + + H ( D S O 2 + + D ), where H contributes to O3 depletion and OH formation. Density Functional Theory and Variational Transition State Theory have been used to investigate the dynamics of the title barrierless and exothermic reaction. The present results suggest that solar geoengineering models should test the reactivity of S O 2 · + with major trace gases in the stratosphere, such as H2 since this is a relevant channel for the OH formation during the nighttime when there is not OH production by sunlight. OH oxides SO2 , triggering the chemical reactions leading to H2 SO4 aerosol.
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Affiliation(s)
- Mauro Satta
- ISMN (CNR) c/o Dipartimento di Chimica Sapienza Universita' di Roma, Pl.e Aldo Moro 5, Roma, Italy
| | - Antonella Cartoni
- Dipartimento di Chimica, Sapienza Universitá di Roma, Pl.e Aldo Moro 5, Roma, Italy
| | - Daniele Catone
- CNR-ISM, Area della Ricerca di Tor Vergata, Via del Fosso del Cavaliere, Roma, Italy
| | | | - Paola Bolognesi
- CNR-ISM, Area della Ricerca di Roma 1, Via Salaria Km 29,300, Monterotondo Scalo (RM), Italy
| | - Nicola Zema
- CNR-ISM, Area della Ricerca di Tor Vergata, Via del Fosso del Cavaliere, Roma, Italy
| | - Lorenzo Avaldi
- CNR-ISM, Area della Ricerca di Roma 1, Via Salaria Km 29,300, Monterotondo Scalo (RM), Italy
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12
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Catone D, Satta M, Cartoni A, Castrovilli MC, Bolognesi P, Turchini S, Avaldi L. Gas Phase Oxidation of Carbon Monoxide by Sulfur Dioxide Radical Cation: Reaction Dynamics and Kinetic Trend With the Temperature. Front Chem 2019; 7:140. [PMID: 30972318 PMCID: PMC6443698 DOI: 10.3389/fchem.2019.00140] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 02/25/2019] [Indexed: 01/16/2023] Open
Abstract
Gas phase ion chemistry has fundamental and applicative purposes since it allows the study of the chemical processes in a solvent free environment and represents models for reactions occurring in the space at low and high temperatures. In this work the ion-molecule reaction of sulfur dioxide ion SO 2 . + with carbon monoxide CO is investigated in a joint experimental and theoretical study. The reaction is a fast and exothermic chemical oxidation of CO into more stable CO2 by a metal free species, as SO 2 . + , excited into ro-vibrational levels of the electronic ground state by synchrotron radiation. The results show that the reaction is hampered by the enhancement of internal energy of sulfur dioxide ion and the only ionic product is SO.+. The theoretical approach of variational transition state theory (VTST) based on density functional electronic structure calculations, shows an interesting and peculiar reaction dynamics of the interacting system along the reaction path. Two energy minima corresponding to [SO2-CO].+ and [OS-OCO].+ complexes are identified. These minima are separated by an intersystem crossing barrier which couples the bent 3B2 state of CO2 with C2v symmetry and the 1A1 state with linear D∞h symmetry. The spin and charge reorganization along the minimum energy path (MEP) are analyzed and eventually the charge and spin remain allocated to the SO.+ moiety and the stable CO2 molecule is easily produced. There is no bottleneck that slows down the reaction and the values of the rate coefficient k at different temperatures are calculated with capture theory. A value of 2.95 × 10-10 cm3s-1molecule-1 is obtained at 300 K in agreement with the literature experimental measurement of 3.00 × 10-10 ± 20% cm3s-1molecule-1, and a negative trend with temperature is predicted consistently with the experimental observations.
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Affiliation(s)
- Daniele Catone
- Istituto di Struttura della Materia, Consiglio Nazionale Delle Ricerche (CNR-ISM), Area della Ricerca di Roma Tor Vergata, Rome, Italy
| | - Mauro Satta
- Istituto per lo Studio dei Materiali Nanostrutturati (CNR-ISMN), Dipartimento di Chimica, Sapienza Università di Roma, Rome, Italy
| | - Antonella Cartoni
- Dipartimento di Chimica, Sapienza Università di Roma, Rome, Italy.,Istituto di Struttura della Materia, Consiglio Nazionale Delle Ricerche (CNR-ISM), Area della Ricerca di Roma 1, Rome, Italy
| | - Mattea C Castrovilli
- Istituto di Struttura della Materia, Consiglio Nazionale Delle Ricerche (CNR-ISM), Area della Ricerca di Roma 1, Rome, Italy
| | - Paola Bolognesi
- Istituto di Struttura della Materia, Consiglio Nazionale Delle Ricerche (CNR-ISM), Area della Ricerca di Roma 1, Rome, Italy
| | - Stefano Turchini
- Istituto di Struttura della Materia, Consiglio Nazionale Delle Ricerche (CNR-ISM), Area della Ricerca di Roma Tor Vergata, Rome, Italy
| | - Lorenzo Avaldi
- Istituto di Struttura della Materia, Consiglio Nazionale Delle Ricerche (CNR-ISM), Area della Ricerca di Roma 1, Rome, Italy
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13
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Chiarinelli J, Markus P, Bolognesi P, Avaldi L, Turco Liveri V, Calandra P. Photo-fragmentation of alkyl phosphates in the gas-phase. J Photochem Photobiol A Chem 2018. [DOI: 10.1016/j.jphotochem.2018.07.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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14
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Cartoni A, Casavola AR, Bolognesi P, Castrovilli MC, Catone D, Chiarinelli J, Richter R, Avaldi L. Insights into 2- and 4(5)-Nitroimidazole Decomposition into Relevant Ions and Molecules Induced by VUV Ionization. J Phys Chem A 2018; 122:4031-4041. [DOI: 10.1021/acs.jpca.8b01144] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- A. Cartoni
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
- Dipartimento di Chimica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185, Roma, Italy
| | - A. R. Casavola
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - P. Bolognesi
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - M. C. Castrovilli
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - D. Catone
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 2, via del Fosso del Cavaliere 10, 00133, Roma, Italy
| | - J. Chiarinelli
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - R. Richter
- Elettra Sincrotrone Trieste, Area Science
Park, 34149, Basovizza, Trieste, Italy
| | - L. Avaldi
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
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15
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Palmer MH, Biczysko M, Baiardi A, Coreno M, de Simone M, Grazioli C, Hoffmann SV, Jones NC, Peterson KA. The ionic states of difluoromethane: A reappraisal of the low energy photoelectron spectrum including ab initio configuration interaction computations. J Chem Phys 2017; 147:074305. [PMID: 28830186 DOI: 10.1063/1.4998150] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A new synchrotron-based study of the photoelectron spectrum (PES) of difluoromethane is interpreted by an ab initio analysis of the ionic states, which includes Franck-Condon (FC) factors. Double differentiation of the spectrum leads to significant spectral sharpening; the vibrational structure observed is now measured with greater accuracy than in previous studies. Several electronic structure methods are used, including equation of motion coupled cluster calculations with single and double excitations (EOM-CCSD), its ionization potential variant EOM-IP-CCSD, 4th order Møller-Plesset perturbation theory (MP4SDQ) configuration interaction (CI), and complete active space self-consistent-field (CASSCF) methods. The adiabatic ionization energies (AIEs) confirm the assignments as band I, one state 12B1 (12.671 eV); band II, three states, 12B2 (14.259) < 12A1 (15.030) < 12A2 (15.478 eV); and band III, three states, 22B2 (18.055) < 22A1 (18.257) < 22B1 (18.808 eV). The three ionizations in each of the bands II and III lead to selective line broadening of the PES structure, which is attributed to vibronic overlap. The apparent lack of a vibrational structure attributable to both the 12A1 and 22A1 states in the PES arises from line broadening with the preceding states 12B2 and 22B2, respectively. Although these 2A1 states clearly overlap with their adjacent higher IE, some vibrational structure is observed on the higher IE. The effects of vibronic coupling are evident since the observed structure does not fit closely with the calculated Born-Oppenheimer FC profiles. Correlation of the lowest group of four AIEs in the PES of other members of the CH2X2 group, where X = F, Cl, Br, and I, clearly indicate these effects are more general.
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Affiliation(s)
- Michael H Palmer
- School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, Scotland, United Kingdom
| | - Malgorzata Biczysko
- International Centre for Quantum and Molecular Structures, College of Sciences, Shanghai University, 99 Shangda Road, Shanghai 200444, China
| | - Alberto Baiardi
- Scuola Normale Superiore, Piazza Cavalieri 7, 56126 Pisa, Italy
| | - Marcello Coreno
- ISM-CNR, Istituto di Struttura della Materia, LD2 Unit, 34149 Trieste, Italy
| | | | - Cesare Grazioli
- ISM-CNR, Istituto di Struttura della Materia, LD2 Unit, 34149 Trieste, Italy
| | - Søren Vrønning Hoffmann
- ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
| | - Nykola C Jones
- ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
| | - Kirk A Peterson
- Department of Chemistry, Washington State University, Pullman, Washington 99164-4630, USA
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16
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Bolognesi P, Casavola AR, Cartoni A, Richter R, Markus P, Borocci S, Chiarinelli J, Tošić S, Sa’adeh H, Masič M, Marinković B, Prince K, Avaldi L. Communication: “Position” does matter: The photofragmentation of the nitroimidazole isomers. J Chem Phys 2016; 145:191102. [DOI: 10.1063/1.4967770] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Affiliation(s)
- P. Bolognesi
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma1, Monterotondo, Italy
| | - A. R. Casavola
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma1, Monterotondo, Italy
| | - A. Cartoni
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma1, Monterotondo, Italy
- Dipartimento di Chimica, Sapienza Università di Roma, Roma, Italy
| | - R. Richter
- Elettra-Sincrotrone Trieste, Basovizza, Italy
| | - P. Markus
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma1, Monterotondo, Italy
| | - S. Borocci
- Dipartimento per l’Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, Viterbo, Italy
| | - J. Chiarinelli
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma1, Monterotondo, Italy
| | - S. Tošić
- Institute of Physics Belgrade, University of Belgrade, Belgrade, Serbia
| | - H. Sa’adeh
- Department of Physics, The University of Jordan, Amman, Jordan
| | - M. Masič
- School of Chemistry, Cardiff University, Cardiff, United Kingdom
| | - B.P. Marinković
- Institute of Physics Belgrade, University of Belgrade, Belgrade, Serbia
| | - K.C. Prince
- Elettra-Sincrotrone Trieste, Basovizza, Italy
| | - L. Avaldi
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma1, Monterotondo, Italy
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17
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Satta M, Bolognesi P, Cartoni A, Casavola AR, Catone D, Markus P, Avaldi L. A joint theoretical and experimental study on diiodomethane: Ions and neutrals in the gas phase. J Chem Phys 2015; 143:244312. [DOI: 10.1063/1.4937425] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Mauro Satta
- Dipartimento di Chimica, CNR-ISMN, Sapienza Università di Roma, Roma 00185, Italy
| | - Paola Bolognesi
- CNR-ISM, Area della Ricerca di Roma 1, Monterotondo Scalo, RM 00015, Italy
| | - Antonella Cartoni
- Dipartimento di Chimica, Sapienza Università di Roma, Roma 00185, Italy
| | - Anna Rita Casavola
- CNR-ISM, Area della Ricerca di Roma 1, Monterotondo Scalo, RM 00015, Italy
| | - Daniele Catone
- CNR-ISM, Area della Ricerca di Roma 2, Roma 00133, Italy
| | - Pal Markus
- CNR-ISM, Area della Ricerca di Roma 1, Monterotondo Scalo, RM 00015, Italy
| | - Lorenzo Avaldi
- CNR-ISM, Area della Ricerca di Roma 1, Monterotondo Scalo, RM 00015, Italy
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