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Richer M, Heidar-Zadeh F, Ríos-Gutiérrez M, Yang XD, Ayers PW. Spin-Polarized Conceptual Density Functional Theory from the Convex Hull. J Chem Theory Comput 2024; 20:4616-4628. [PMID: 38819213 DOI: 10.1021/acs.jctc.4c00213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
Abstract
We present a new, nonarbitrary, internally consistent, and unambiguous framework for spin-polarized conceptual density-functional theory (SP-DFT). We explicitly characterize the convex hull of energy, as a function of the number of electrons and their spin, as the only accessible ground states in spin-polarized density functional theory. Then, we construct continuous linear and quadratic models for the energy. The nondifferentiable linear model exactly captures the simplicial geometry of the complex hull about the point of interest and gives exact representations for the conceptual DFT reactivity indicators. The continuous quadratic energy model is the paraboloid of maximum curvature, which most tightly encloses the point of interest and neighboring vertices. The quadratic model is invariant to the choice of coordinate system (i.e., {N, S} vs {Nα, Nβ}) and reduces to a sensible formulation of spin-free conceptual DFT in the appropriate limit. Using the quadratic model, we generalize the Parr functions {P+(r), P-(r)} (and their derivatives with respect to number of electrons) to this new spin-polarized framework, integrating the Parr function concept into the context of (spin-polarized) conceptual DFT, and extending it to include higher-order effects.
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Affiliation(s)
- Michelle Richer
- Department of Chemistry, Queen's University, 90 Bader Lane, Kingston, Ontario K7L 3N6, Canada
- Department of Chemistry, McMaster University, 1280 Main St. West, Hamilton, Ontario L8S 4M1, Canada
| | - Farnaz Heidar-Zadeh
- Department of Chemistry, Queen's University, 90 Bader Lane, Kingston, Ontario K7L 3N6, Canada
| | - Mar Ríos-Gutiérrez
- Department of Organic Chemistry, University of Valencia, Dr. Moliner 50, 46100 Burjassot, Valencia, Spain
| | - Xiaotian Derrick Yang
- Department of Chemistry, McMaster University, 1280 Main St. West, Hamilton, Ontario L8S 4M1, Canada
| | - Paul W Ayers
- Department of Chemistry, McMaster University, 1280 Main St. West, Hamilton, Ontario L8S 4M1, Canada
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Wang B, Geerlings P, Liu S, De Proft F. Extending the Scope of Conceptual Density Functional Theory with Second Order Analytical Methodologies. J Chem Theory Comput 2024. [PMID: 38310523 DOI: 10.1021/acs.jctc.3c01184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2024]
Abstract
In the context of the growing impact of conceptual density functional theory (DFT) as one of the most successful chemical reactivity theories, response functions up to second order have now been widely applied; in recent years, among others, particular attention has been focused on the linear response function and also extensions to higher order have been put forward. As the larger part of these studies have been carried using a finite difference approach to compute these concepts, we now embarked on (an extension of) an analytical approach to conceptual DFT. With the ultimate aim of providing a complete set of analytically computable second order properties, including the softness and hardness kernels, the hardness as the simplest second order response function is scrutinized again with numerical results highlighting the difference in nature between the analytical hardness (referred to as hardness condition) and the Parr-Pearson absolute chemical hardness. The hardness condition is investigated for its capability to gauge the (de)localization error of density functional approximations (DFAs). The analytical Fukui function, besides overcoming the difficulties in the finite difference approach in treating negatively charged systems, also showcases the errors of deviating from the straight-line behavior using fractional occupation number calculations. Subsequently, the softness kernel and its atom-condensed inverse, the hardness matrix, are accessed through the Berkowitz-Parr relation. Revisiting the softness kernel confirms and extends previous discussions on how Kohn's Nearsightedness of Electronic Matter principle can be retrieved and identified as the physicist's version of the chemist's "transferability of functional groups" concept. The accurate, analytical hardness matrix evaluation on the other hand provides further support for the basics of Nalewajski's charge sensitivity analysis. Based on Parr and Liu's functional expansion of the energy functional, a new energy decomposition is introduced with an order of magnitude analysis of the different terms for a series of simple molecules both at their equilibrium geometry and upon variation in bond length and dihedral angle. Finally, for the first time, the perturbation expansion of the energy functional is studied numerically up to second order now that all response functions and integration techniques are at hand. The perturbation expansion energies are in excellent agreement with those obtained directly from DFA calculations giving confidence in the convergence of the perturbation series and its use in judging the importance of the different terms in reactivity investigations.
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Affiliation(s)
- Bin Wang
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
| | - Paul Geerlings
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, North Carolina 27599-3420, United States
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
| | - Frank De Proft
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
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Fias S, Ayers PW, De Proft F, Geerlings P. Properties of the density functional response kernels and its implications on chemistry. J Chem Phys 2022; 157:114102. [PMID: 36137804 DOI: 10.1063/5.0094653] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
An overview of mathematical properties of the non-local second order derivatives of the canonical, grand canonical, isomorphic, and grand isomorphic ensembles is given. The significance of their positive or negative semidefiniteness and the implications of these properties for atoms and molecules are discussed. Based on this property, many other interesting properties can be derived, such as the expansion in eigenfunctions, bounds on the diagonal and off-diagonal elements, and the eigenvalues of these kernels. We also prove Kato's theorem for the softness kernel and linear response and the dissociation limit of the linear responses as the sum of the linear responses of the individual fragments when dissociating a system into two non-interacting molecular fragments. Finally, strategies for the practical calculation of these kernels, their eigenfunctions, and their eigenvalues are discussed.
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Affiliation(s)
- Stijn Fias
- McMaster University, 1280 Main St. W, Hamilton, Ontario L8S 4L8, Canada
| | - Paul W Ayers
- McMaster University, 1280 Main St. W, Hamilton, Ontario L8S 4L8, Canada
| | - Frank De Proft
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
| | - Paul Geerlings
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium
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Geerlings P, Chamorro E, Chattaraj PK, De Proft F, Gázquez JL, Liu S, Morell C, Toro-Labbé A, Vela A, Ayers P. Conceptual density functional theory: status, prospects, issues. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2546-7] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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5
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Cedillo A. The density response kernel, the Fukui function, and other response functions from the Kohn–Sham orbitals. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2465-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Kitakawa CK, Maruyama T, Oonari J, Mitsuta Y, Kawakami T, Okumura M, Yamaguchi K, Yamanaka S. Linear Response Functions of Densities and Spin Densities for Systematic Modeling of the QM/MM Approach for Mono- and Poly-Nuclear Transition Metal Systems. Molecules 2019; 24:E821. [PMID: 30823580 PMCID: PMC6412466 DOI: 10.3390/molecules24040821] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2018] [Revised: 01/28/2019] [Accepted: 02/15/2019] [Indexed: 12/02/2022] Open
Abstract
We applied our analysis, based on a linear response function of density and spin density, to two typical transition metal complex systems-the reaction centers of P450, and oxygen evolving center in Photosystem II, both of which contain open-shell transition metal ions. We discuss the relationship between LRF of electron density and spin density and the types of units and interactions of the systems. The computational results are discussed in relation to quantum mechanics (QM) cluster and quantum mechanics/molecular mechanics (QM/MM) modeling that are employed to compute the reaction centers of enzymes.
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Affiliation(s)
- Colin K Kitakawa
- Graduate School of Science, Osaka University, Osaka 565-0871, Japan.
| | - Tomohiro Maruyama
- Graduate School of Science, Osaka University, Osaka 565-0871, Japan.
| | - Jinta Oonari
- Graduate School of Science, Osaka University, Osaka 565-0871, Japan.
| | - Yuki Mitsuta
- Graduate School of Science, Osaka University, Osaka 565-0871, Japan.
| | - Takashi Kawakami
- Graduate School of Science, Osaka University, Osaka 565-0871, Japan.
| | - Mitsutaka Okumura
- Graduate School of Science, Osaka University, Osaka 565-0871, Japan.
| | | | - Shusuke Yamanaka
- Graduate School of Science, Osaka University, Osaka 565-0871, Japan.
- Quantum information, Quantum Biology division, Institute for Open and Transdisciplinary Research Initiatives, Osaka University, Osaka 560-8531, Japan.
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Fias S, Heidar-Zadeh F, Anderson JSM, Ayers PW, Parr RG. A reference-free stockholder partitioning method based on the force on electrons. J Comput Chem 2017; 39:1044-1050. [DOI: 10.1002/jcc.25114] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Revised: 09/14/2017] [Accepted: 10/06/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Stijn Fias
- Department of Chemistry & Chemical Biology; McMaster University; Hamilton Ontario Canada L8S 4M1
| | - Farnaz Heidar-Zadeh
- Department of Chemistry & Chemical Biology; McMaster University; Hamilton Ontario Canada L8S 4M1
- Center for Molecular Modeling; Ghent University, Technologiepark 903; 9052 Zwijnaarde Belgium
- Department of Inorganic and Physical Chemistry; Ghent University, Krijgslaan 281 (S3); 9000 Gent Belgium
| | | | - Paul W. Ayers
- Department of Chemistry & Chemical Biology; McMaster University; Hamilton Ontario Canada L8S 4M1
| | - Robert G. Parr
- Department of Chemistry; University of North Carolina; Chapel Hill NC USA 27599
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Heidar-Zadeh F, Miranda-Quintana RA, Verstraelen T, Bultinck P, Ayers PW. When is the Fukui Function Not Normalized? The Danger of Inconsistent Energy Interpolation Models in Density Functional Theory. J Chem Theory Comput 2016; 12:5777-5787. [DOI: 10.1021/acs.jctc.6b00494] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Farnaz Heidar-Zadeh
- Department of Chemistry & Chemical Biology, McMaster University, Hamilton, L8S 4M1 Ontario, Canada
- Department
of Inorganic and Physical Chemistry, Ghent University, Krijgslaan
281 (S3), 9000 Gent, Belgium
- Center
for Molecular Modeling, Ghent University, Technologiepark 903, 9052 Zwijnaarde, Belgium
| | - Ramón Alain Miranda-Quintana
- Department of Chemistry & Chemical Biology, McMaster University, Hamilton, L8S 4M1 Ontario, Canada
- Laboratory
of Computational and Theoretical Chemistry, Faculty of Chemistry, University of Havana, Havana, Cuba
| | - Toon Verstraelen
- Center
for Molecular Modeling, Ghent University, Technologiepark 903, 9052 Zwijnaarde, Belgium
| | - Patrick Bultinck
- Department
of Inorganic and Physical Chemistry, Ghent University, Krijgslaan
281 (S3), 9000 Gent, Belgium
| | - Paul W. Ayers
- Department of Chemistry & Chemical Biology, McMaster University, Hamilton, L8S 4M1 Ontario, Canada
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Miranda-Quintana RA, Ayers PW. Systematic treatment of spin-reactivity indicators in conceptual density functional theory. Theor Chem Acc 2016. [DOI: 10.1007/s00214-016-1995-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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11
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Boisdenghien Z, Fias S, Da Pieve F, De Proft F, Geerlings P. The polarisability of atoms and molecules: a comparison between a conceptual density functional theory approach and time-dependent density functional theory. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1021110] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Zino Boisdenghien
- General Chemistry (ALGC), Vrije Universiteit Brussel (Free University Brussels – VUB) Brussel, Belgium
| | - Stijn Fias
- General Chemistry (ALGC), Vrije Universiteit Brussel (Free University Brussels – VUB) Brussel, Belgium
| | - Fabiana Da Pieve
- European Theoretical Spectroscopy Facility (ETSF), Ecole Polytechnique, Palaiseau, France
- Laboratoire des Solides Irradiés, Ecole Polytechnique, Palaiseau, France
| | - Frank De Proft
- General Chemistry (ALGC), Vrije Universiteit Brussel (Free University Brussels – VUB) Brussel, Belgium
| | - Paul Geerlings
- General Chemistry (ALGC), Vrije Universiteit Brussel (Free University Brussels – VUB) Brussel, Belgium
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Stuyver T, Fias S, De Proft F, Fowler PW, Geerlings P. Conduction of molecular electronic devices: Qualitative insights through atom-atom polarizabilities. J Chem Phys 2015; 142:094103. [DOI: 10.1063/1.4913415] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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