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Leoni F, Shi R, Tanaka H, Russo J. Crystalline clusters in mW water: Stability, growth, and grain boundaries. J Chem Phys 2019; 151:044505. [DOI: 10.1063/1.5100812] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Fabio Leoni
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom
| | - Rui Shi
- Department of Fundamental Engineering, Institute of Industrial Science, University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
| | - Hajime Tanaka
- Department of Fundamental Engineering, Institute of Industrial Science, University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
| | - John Russo
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom
- Department of Fundamental Engineering, Institute of Industrial Science, University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
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2
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Shaykomalova ES, Zhuravlyov YN. Structure and Properties of Ice Phase States. J STRUCT CHEM+ 2019. [DOI: 10.1134/s0022476619010086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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3
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Engel EA, Anelli A, Ceriotti M, Pickard CJ, Needs RJ. Mapping uncharted territory in ice from zeolite networks to ice structures. Nat Commun 2018; 9:2173. [PMID: 29872048 PMCID: PMC5988809 DOI: 10.1038/s41467-018-04618-6] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2017] [Accepted: 05/11/2018] [Indexed: 11/09/2022] Open
Abstract
Ice is one of the most extensively studied condensed matter systems. Yet, both experimentally and theoretically several new phases have been discovered over the last years. Here we report a large-scale density-functional-theory study of the configuration space of water ice. We geometry optimise 74,963 ice structures, which are selected and constructed from over five million tetrahedral networks listed in the databases of Treacy, Deem, and the International Zeolite Association. All prior knowledge of ice is set aside and we introduce "generalised convex hulls" to identify configurations stabilised by appropriate thermodynamic constraints. We thereby rediscover all known phases (I-XVII, i, 0 and the quartz phase) except the metastable ice IV. Crucially, we also find promising candidates for ices XVIII through LI. Using the "sketch-map" dimensionality-reduction algorithm we construct an a priori, navigable map of configuration space, which reproduces similarity relations between structures and highlights the novel candidates. By relating the known phases to the tractably small, yet structurally diverse set of synthesisable candidate structures, we provide an excellent starting point for identifying formation pathways.
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Affiliation(s)
- Edgar A Engel
- TCM Group, Cavendish Laboratory, J J Thomson Avenue, Cambridge, CB3 0HE, UK.
| | - Andrea Anelli
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015, Lausanne, Switzerland
| | - Michele Ceriotti
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015, Lausanne, Switzerland
| | - Chris J Pickard
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge, CB3 0FS, UK
- Advanced Institute for Materials Research, Tohoku University, 2-1-1 Katahira, Aoba, Sendai, 980-8577, Japan
| | - Richard J Needs
- TCM Group, Cavendish Laboratory, J J Thomson Avenue, Cambridge, CB3 0HE, UK
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4
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Al-Hamdani YS, Rossi M, Alfè D, Tsatsoulis T, Ramberger B, Brandenburg JG, Zen A, Kresse G, Grüneis A, Tkatchenko A, Michaelides A. Properties of the water to boron nitride interaction: From zero to two dimensions with benchmark accuracy. J Chem Phys 2017; 147:044710. [DOI: 10.1063/1.4985878] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yasmine S. Al-Hamdani
- Thomas Young Centre and London Centre for Nanotechnology, 17–19 Gordon Street, London WC1H 0AH, United Kingdom
- Physics and Materials Science Research Unit, University of Luxembourg, L-1511 Luxembourg, Luxembourg
| | - Mariana Rossi
- Fritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany
| | - Dario Alfè
- Thomas Young Centre and London Centre for Nanotechnology, 17–19 Gordon Street, London WC1H 0AH, United Kingdom
- Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Theodoros Tsatsoulis
- Max Planck Institute for Solid State Research, Heisenbergstraße 1, D-70569 Stuttgart, Germany
| | - Benjamin Ramberger
- University of Vienna, Faculty of Physics and Center for Computational Materials Sciences, Sensengasse 8/12, 1090 Wien, Austria
| | - Jan Gerit Brandenburg
- Thomas Young Centre and London Centre for Nanotechnology, 17–19 Gordon Street, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AH, United Kingdom
| | - Andrea Zen
- Thomas Young Centre and London Centre for Nanotechnology, 17–19 Gordon Street, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Georg Kresse
- University of Vienna, Faculty of Physics and Center for Computational Materials Sciences, Sensengasse 8/12, 1090 Wien, Austria
| | - Andreas Grüneis
- Max Planck Institute for Solid State Research, Heisenbergstraße 1, D-70569 Stuttgart, Germany
| | - Alexandre Tkatchenko
- Physics and Materials Science Research Unit, University of Luxembourg, L-1511 Luxembourg, Luxembourg
| | - Angelos Michaelides
- Thomas Young Centre and London Centre for Nanotechnology, 17–19 Gordon Street, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
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5
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Dubecký M. Noncovalent Interactions by Fixed-Node Diffusion Monte Carlo: Convergence of Nodes and Energy Differences vs Gaussian Basis-Set Size. J Chem Theory Comput 2017; 13:3626-3635. [DOI: 10.1021/acs.jctc.7b00537] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Matúš Dubecký
- Department of Physics, Faculty of Science, University of Ostrava, 30. dubna 22, 701
03 Ostrava, Czech Republic
- ATRI, Faculty of Materials
Science and Technology, Slovak University of Technology, Paulínska
16, 917 24 Trnava, Slovakia
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6
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Ambler M, Vorselaars B, Allen MP, Quigley D. Solid–liquid interfacial free energy of ice Ih, ice Ic, and ice 0 within a mono-atomic model of water via the capillary wave method. J Chem Phys 2017; 146:074701. [DOI: 10.1063/1.4975776] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Affiliation(s)
- Michael Ambler
- Department of Physics, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Bart Vorselaars
- Department of Physics, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Michael P. Allen
- Department of Physics, University of Warwick, Coventry CV4 7AL, United Kingdom
- H. H. Wills Physics Laboratory,
Royal Fort, Tyndall Avenue, Bristol BS8 1TL, United Kingdom
| | - David Quigley
- Department of Physics, University of Warwick, Coventry CV4 7AL, United Kingdom
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7
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Russo J, Tanaka H. Crystal nucleation as the ordering of multiple order parameters. J Chem Phys 2016; 145:211801. [DOI: 10.1063/1.4962166] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Affiliation(s)
- John Russo
- Institute of Industrial Science, University of Tokyo, Meguro-ku, Tokyo 153-8505, Japan
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom
| | - Hajime Tanaka
- Institute of Industrial Science, University of Tokyo, Meguro-ku, Tokyo 153-8505, Japan
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9
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Salzmann CG, Slater B, Radaelli PG, Finney JL, Shephard JJ, Rosillo-Lopez M, Hindley J. Detailed crystallographic analysis of the ice VI to ice XV hydrogen ordering phase transition. J Chem Phys 2016; 145:204501. [DOI: 10.1063/1.4967167] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Christoph G. Salzmann
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Ben Slater
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Paolo G. Radaelli
- Department of Physics, University of Oxford, Parks Road, Oxford OX1 3PU, United Kingdom
| | - John L. Finney
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Jacob J. Shephard
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Martin Rosillo-Lopez
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - James Hindley
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
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Zen A, Roch LM, Cox SJ, Hu XL, Sorella S, Alfè D, Michaelides A. Toward Accurate Adsorption Energetics on Clay Surfaces. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2016; 120:26402-26413. [PMID: 27917256 PMCID: PMC5126707 DOI: 10.1021/acs.jpcc.6b09559] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Revised: 10/31/2016] [Indexed: 05/31/2023]
Abstract
Clay minerals are ubiquitous in nature, and the manner in which they interact with their surroundings has important industrial and environmental implications. Consequently, a molecular-level understanding of the adsorption of molecules on clay surfaces is crucial. In this regard computer simulations play an important role, yet the accuracy of widely used empirical force fields (FF) and density functional theory (DFT) exchange-correlation functionals is often unclear in adsorption systems dominated by weak interactions. Herein we present results from quantum Monte Carlo (QMC) for water and methanol adsorption on the prototypical clay kaolinite. To the best of our knowledge, this is the first time QMC has been used to investigate adsorption at a complex, natural surface such as a clay. As well as being valuable in their own right, the QMC benchmarks obtained provide reference data against which the performance of cheaper DFT methods can be tested. Indeed using various DFT exchange-correlation functionals yields a very broad range of adsorption energies, and it is unclear a priori which evaluation is better. QMC reveals that in the systems considered here it is essential to account for van der Waals (vdW) dispersion forces since this alters both the absolute and relative adsorption energies of water and methanol. We show, via FF simulations, that incorrect relative energies can lead to significant changes in the interfacial densities of water and methanol solutions at the kaolinite interface. Despite the clear improvements offered by the vdW-corrected and the vdW-inclusive functionals, absolute adsorption energies are often overestimated, suggesting that the treatment of vdW forces in DFT is not yet a solved problem.
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Affiliation(s)
- Andrea Zen
- Thomas
Young Centre and London Centre for Nanotechnology, 17−19 Gordon Street, London WC1H 0AH, United
Kingdom
- Department
of Physics and Astronomy, University College
London, Gower Street, London WC1E 6BT, United Kingdom
| | - Loïc M. Roch
- Thomas
Young Centre and London Centre for Nanotechnology, 17−19 Gordon Street, London WC1H 0AH, United
Kingdom
- Department
of Physics and Astronomy, University College
London, Gower Street, London WC1E 6BT, United Kingdom
| | - Stephen J. Cox
- Thomas
Young Centre and London Centre for Nanotechnology, 17−19 Gordon Street, London WC1H 0AH, United
Kingdom
- Department
of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Xiao Liang Hu
- Thomas
Young Centre and London Centre for Nanotechnology, 17−19 Gordon Street, London WC1H 0AH, United
Kingdom
- Department
of Physics and Astronomy, University College
London, Gower Street, London WC1E 6BT, United Kingdom
| | - Sandro Sorella
- SISSA−International
School for Advanced Studies, Via Bonomea 26, 34136 Trieste, Italy
- INFM
Democritos National Simulation Center, 34151 Trieste, Italy
| | - Dario Alfè
- Thomas
Young Centre and London Centre for Nanotechnology, 17−19 Gordon Street, London WC1H 0AH, United
Kingdom
- Department
of Earth Sciences, University College London, Gower Street, London WC1E 6BT, United
Kingdom
| | - Angelos Michaelides
- Thomas
Young Centre and London Centre for Nanotechnology, 17−19 Gordon Street, London WC1H 0AH, United
Kingdom
- Department
of Physics and Astronomy, University College
London, Gower Street, London WC1E 6BT, United Kingdom
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11
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Affiliation(s)
- Matúš Dubecký
- Regional
Centre of Advanced Technologies and Materials, Department of Physical
Chemistry, Faculty of Science, Palacký University Olomouc, tř.
17 listopadu 12, 771 46 Olomouc, Czech Republic
| | - Lubos Mitas
- Department
of Physics and CHiPS, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Petr Jurečka
- Regional
Centre of Advanced Technologies and Materials, Department of Physical
Chemistry, Faculty of Science, Palacký University Olomouc, tř.
17 listopadu 12, 771 46 Olomouc, Czech Republic
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12
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Abstract
Interest in molecular crystals has grown thanks to their relevance to pharmaceuticals, organic semiconductor materials, foods, and many other applications. Electronic structure methods have become an increasingly important tool for modeling molecular crystals and polymorphism. This article reviews electronic structure techniques used to model molecular crystals, including periodic density functional theory, periodic second-order Møller-Plesset perturbation theory, fragment-based electronic structure methods, and diffusion Monte Carlo. It also discusses the use of these models for predicting a variety of crystal properties that are relevant to the study of polymorphism, including lattice energies, structures, crystal structure prediction, polymorphism, phase diagrams, vibrational spectroscopies, and nuclear magnetic resonance spectroscopy. Finally, tools for analyzing crystal structures and intermolecular interactions are briefly discussed.
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Affiliation(s)
- Gregory J O Beran
- Department of Chemistry, University of California , Riverside, California 92521, United States
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Affiliation(s)
- Frank Smallenburg
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine Universität Düsseldorf , Düsseldorf, Germany
| | - Peter H. Poole
- Department of Physics, St. Francis Xavier University , Nova Scotia, Canada
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Del Ben M, VandeVondele J, Slater B. Periodic MP2, RPA, and Boundary Condition Assessment of Hydrogen Ordering in Ice XV. J Phys Chem Lett 2014; 5:4122-8. [PMID: 26278943 DOI: 10.1021/jz501985w] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Ice XV is the hydrogen-ordered form of the ice VI phase whose structure was predicted to be Cc and ferroelectric using periodic DFT approaches. However, neutron diffraction and Raman spectroscopy data show the structure to have P1̅ symmetry and to be antiferroelectric. Recent work1 using fragment-based MP2 and CCSD(T) approaches predicts the experimental structure as the ground state. We have reconsidered this problem using fully periodic MP2 and RPA approaches and find that the ferroelectric Cc structure is the lowest energy configuration. However, ubiquitously employed tinfoil boundary conditions stabilize polar structures. We suggest that ferroelectric Cc crystals can grow within a paraelectric ice VI matrix but may become unstable once a fraction of the matrix has become hydrogen-ordered. The reduction in dielectric constant causes P1̅ and other structures with small polarization to become favored, providing a possible resolution between observation and theoretical predictions.
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Affiliation(s)
- Mauro Del Ben
- †Department of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Joost VandeVondele
- ‡Department of Materials, ETH Zürich, Wolfgang-Pauli-Strasse 27, CH-8093 Zürich, Switzerland
| | - Ben Slater
- §Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
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