Detachment of semiflexible polymer chains from a substrate: a molecular dynamics investigation

Effect of Charge State on the Equilibrium and Kinetic Properties of Mechanically Interlocked [5]Rotaxane: A Molecular Dynamics Study

Rotaxanes can exhibit stimuli-responsive behavior by allowing positional fluctuations of their rota groups in response to physiochemical conditions such as the changes in solution pH. However, ionic strength of the solution also affects the molecular conformation by altering the charge state of the entire molecule, coupling the stimuli-responsiveness of rotaxanes with their conformation. A molecular-scale investigation on a model system can allow the decoupling and identification of various effects and can greatly benefit applications of such molecular switches. By using atomistic molecular dynamics simulations, we study equilibrium and kinetics properties of various charge states of the [5]rotaxane, which is a supramolecular moiety with four rotaxanes bonded to a porphyrin core. We model various physiochemical charge states, each of which can be realized at various solution pH levels as well as several exotic charge distributions. By analyzing molecular configurations, hydrogen bonding, and energetics of single molecules in salt-free water and its polyrotaxanated network at the interface of water and chloroform, we demonstrate that charge-neutral and negatively charged molecules often tend to collapse in a way that they can expose their porphyrin core. Contrarily, positively charged moieties tend to take more extended molecular configurations blocking the core. Further, sudden changes in the charge states emulating the pH alterations in solution conditions lead to rapid, sub-10 ns level, changes in the molecular conformation of [5]rotaxane via shuttling motion of CB6 rings along axles. Finally, simulations of 2D [5]rotaxane network structures support our previous findings on a few nanometer-thick film formation at oil-water interfaces. Overall, our results suggest that rotaxane-based structures can exhibit a rich spectrum of molecular configurations and kinetics depending on the ionic strength of the solution.

Forward Flux Sampling of Polymer Desorption Paths from a Solid Surface into Dilute Solution

We compute desorption rates for isolated polymers adsorbed to a solid wall with a rare event sampling technique called multilevel splitting, also known as forward flux sampling. We interpret computed rates with theories based on the conjecture that the product tdesDRg2 of the desorption time tdes and diffusivity D divided by squared radius of gyration Rg scales with exp(h/Rg) where h is the equilibrium ratio of adsorbed surface concentration of polymer Γ to bulk concentration of polymer c. As the polymer-wall interaction energy is increased, the slope of lntdesDRg2 vs. NVMFkBT nearly approaches unity, as expected for strongly-adsorbing chains, where N is the degree of polymerization and VMF is the height-averaged monomer-wall interaction energy for a strongly adsorbed chain. However, we also find that this scaling law is only accurate when adsorption strength per monomer exceeds a threshold value on the order of 0.3-0.5 kBT for a freely jointed chain without or with excluded volume effects. Below the critical value, we observe that tdesDRg2 becomes nearly constant with N, so that tdes∝Nα, with α≈2. This suggests a crossover from "strong" detachment-controlled to a "weak" diffusion-controlled desorption rate as VMF/kBT drops below some threshold. These results may partially explain experimental data, that in some cases show "strong" exponential dependence of desorption time on chain length, while in others a "weak" power-law dependence is found. However, in the "strong" adsorption case, our results suggest much longer desorption times than those measured, while the reverse is true in the weak adsorption limit. We discuss possible reasons for these discrepancies.

Self-Consistent Field Modeling of Pulling a Test-Chain away from or Pushing It into a Polymer Adsorption Layer

We consider single chain force measurements to unravel characteristics of polymers at interfaces and to determine parameters that control adsorption or probe layer characteristics that are difficult to access otherwise. The idea is to have at the tip of an atomic force microscope (AFM), a probe chain and measure its behaviour near interfaces by pushing it to, or pulling it away from it. The self-consistent field modeling of this reveals that in the pulling mode—i.e., when the chain has an affinity for the surface—a typically inhomogeneous flower-like conformation forms with an adsorbed ’pancake’ and a stretched stem (tether) from the surface to the tip of the AFM. When about half the segments is in the tether it snaps loose in a first-order like fashion. The critical distance of the end-point from the surface and the critical force are experimentally accessible. Details of this transition depend on the surrounding of the test chain. Inversely, and this opens up many possibilities, the test chain reports about its surroundings. Our focus is on the classical case of homopolymers at interfaces. Pulling experiments may reveal the adsorption strength, the (average) chain length and/or the polymer concentration of the freely dispersed/adsorbed polymers. When the test-chain is non-adsorbing we envision that pushing this test-chain into the adsorption layer reports about various layer characteristics such as the layer thickness and (local) density. Moreover, when the test-chain has a length longer than the entanglement length, we can imagine that non-trivial dynamical properties of loops and tails may be scrutinised.