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Lozano AI, Kumar S, Pereira PJS, Kerkeni B, García G, Limão-Vieira P. Low-lying Negative Ion States Probed in Potassium - Ethanol Collisions. Chemphyschem 2024; 25:e202400314. [PMID: 38630012 DOI: 10.1002/cphc.202400314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 04/17/2024] [Indexed: 05/23/2024]
Abstract
Dissociative electron transfer in collisions between neutral potassium atoms and neutral ethanol molecules yields mainly OH-, followed by C2H5O-, O-, CH3 - and CH2 -. The dynamics of negative ions have been investigated by recording time-of-flight mass spectra in a wide range of collision energies from 17.5 to 350 eV in the lab frame, where the branching ratios show a relevant energy dependence for low/intermediate collision energies. The dominant fragmentation channel in the whole energy range investigated has been assigned to the hydroxyl anion in contrast to oxygen anion from dissociative electron attachment (DEA) experiments. This result shows the relevant role of the electron donor in the vicinity of the temporary negative ion formed allowing access to reactions which are not thermodynamically attained in DEA experiments. The electronic state spectroscopy of such negative ions, was obtained from potassium cation energy loss spectra in the forward scattering direction at 205 eV impact energy, showing a prevalent Feshbach resonance at 9.36±0.10 eV withσ O H * / σ C H * ${{\sigma }_{OH}^{^{\ast}}/{\sigma }_{CH}^{^{\ast}}}$ character, while a less pronouncedσ O H * ${{\sigma }_{OH}^{^{\ast}}}$ contribution assigned to a shape resonance has been obtained at 3.16±0.10 eV. Quantum chemical calculations for the lowest-lying unoccupied molecular orbitals in the presence of a potassium atom have been performed to support the experimental findings.
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Affiliation(s)
- Ana Isabel Lozano
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal
- Institut de Recherche en Astrophysique et Planétologie (IRAP), Université Toulouse III - Paul Sabatier, CNRS, CNES, 9 Avenue du Colonel Roche, 31028 Toulouse, France
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, 94720, California, USA
| | - Sarvesh Kumar
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal
- Institut de Recherche en Astrophysique et Planétologie (IRAP), Université Toulouse III - Paul Sabatier, CNRS, CNES, 9 Avenue du Colonel Roche, 31028 Toulouse, France
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, 94720, California, USA
| | - Pedro J S Pereira
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal
- Institut de Recherche en Astrophysique et Planétologie (IRAP), Université Toulouse III - Paul Sabatier, CNRS, CNES, 9 Avenue du Colonel Roche, 31028 Toulouse, France
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, 94720, California, USA
- Department of Mathematics, Instituto Superior de Engenharia de Lisboa, R. Conselheiro Emídio Navarro 1, 1959-007, Lisboa, Portugal
| | - Boutheïna Kerkeni
- ISAMM, Université de la Manouba, La Manouba, 2010, Tunisia
- Département de Physique, LPMC, Faculté des Sciences de Tunis, Université de Tunis el Manar, Tunis, 2092, Tunisia
| | - Gustavo García
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas (CSIC), Serrano 113-bis, 28006, Madrid, Spain
| | - Paulo Limão-Vieira
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal
- Institut de Recherche en Astrophysique et Planétologie (IRAP), Université Toulouse III - Paul Sabatier, CNRS, CNES, 9 Avenue du Colonel Roche, 31028 Toulouse, France
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, 94720, California, USA
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Kusumoto T, Fromm M, Cloutier P, Bass AD, Sanche L, Kodaira S. Revealing the mechanism of damage to the carbonate ester in PADC polymeric nuclear track detector using low-energy electron stimulated desorption. Phys Chem Chem Phys 2023; 25:30412-30418. [PMID: 37916504 DOI: 10.1039/d3cp04282k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023]
Abstract
We investigate the mechanism of damage to the carbonate ester chemical functions in Poly allyl diglycol carbonate (PADC) induced by low-energy electrons (LEEs) of <50 eV, which are major components of the initial secondary products of ionizing radiation. PADC is the world's most widely used polymeric nuclear track detector (PNTD) for swift ion detection. Using diethylene glycol monoethyl ether acetate as a surrogate for PADC, we have measured for irradiation with low-energy electrons (LEEs) of <50 eV, the electron stimulated desorption (ESD) signal of O- from 3-monolayer thick films of DGMEA by time-of-flight mass spectrometry. We find that for electron irradiation at energies >6-9 eV, the instantaneous ESD yield of O- increases with the cumulative number of incident electrons (i.e., fluence), indicating that the additional O- signal derives from an electron-induced DGMEA product. From comparison with ESD measurements from films of acetic acid and acetaldehyde, we identify that the additional desorbed O- signal derives from oxygen atoms originally adjacent to the carbonyl bond in DGMEA. Since LEEs are the predominant secondary particles produced by ionizing radiation, this finding helps to better understand the mechanism of damage to carbonate ester in PADC, which is a key step for latent track formation in PADC.
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Affiliation(s)
- Tamon Kusumoto
- National Institutes for Quantum and Radiological Sciences and Technology, 4-9-1 Anagawa, Inage-ku, 263-8555 Chiba, Japan
| | - Michel Fromm
- UMR CNRS 6249 Chrono-Environnement, Université de Franche-Comté, 16 Route de Gray, F-2530 Besançon Cedex, France.
| | - Pierre Cloutier
- Départment de Médecine Nucléaire et Radiobiologie, Faculté de médecine, Université de Sherbrooke, Sherbrooke, Québec J1H 5N4, Canada
| | - Andrew D Bass
- Départment de Médecine Nucléaire et Radiobiologie, Faculté de médecine, Université de Sherbrooke, Sherbrooke, Québec J1H 5N4, Canada
| | - Léon Sanche
- Départment de Médecine Nucléaire et Radiobiologie, Faculté de médecine, Université de Sherbrooke, Sherbrooke, Québec J1H 5N4, Canada
| | - Satoshi Kodaira
- National Institutes for Quantum and Radiological Sciences and Technology, 4-9-1 Anagawa, Inage-ku, 263-8555 Chiba, Japan
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Paul A, Ghosh S, Nandi D. Fragmentation dynamics and absolute dissociative electron attachment cross sections in the low energy electron collision with ethanol. Phys Chem Chem Phys 2023; 25:28263-28271. [PMID: 37830258 DOI: 10.1039/d3cp03601d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2023]
Abstract
Dissociative electron attachment (DEA) to ethanol has been probed to study fragmentation dynamics using Time-of-Flight (ToF) mass spectrometric technique. Several fragment ions, namely, H-, O-, OH-, C2H3O- and C2H5O- have been observed. Extra effort has been made to detect low mass ions (here, H-). Absolute DEA cross sections for the formation of O- and OH- have been measured for the first time using relative flow technique (RFT). The threshold energy of different dissociation channels has been calculated using density functional theory (DFT) method. By combining the experimental and theoretical data, we found evidence of hydrogen migration in the production of O and C2H3O- ions.
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Affiliation(s)
- Anirban Paul
- Indian Institute of Science Education & Research Kolkata, Mohanpur 741246, India.
| | - Soumya Ghosh
- Indian Institute of Science Education & Research Kolkata, Mohanpur 741246, India.
| | - Dhananjay Nandi
- Indian Institute of Science Education & Research Kolkata, Mohanpur 741246, India.
- Center for Atomic, Molecular and Optical Sciences &Technologies, Joint initiative of IIT Tirupati and IISER Tirupati, Yerpedu, 517619, Andhra Pradesh, India
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Narayanan S J J, Tripathi D, Verma P, Adhikary A, Dutta AK. Secondary Electron Attachment-Induced Radiation Damage to Genetic Materials. ACS OMEGA 2023; 8:10669-10689. [PMID: 37008102 PMCID: PMC10061531 DOI: 10.1021/acsomega.2c06776] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2022] [Accepted: 02/20/2023] [Indexed: 06/19/2023]
Abstract
Reactions of radiation-produced secondary electrons (SEs) with biomacromolecules (e.g., DNA) are considered one of the primary causes of radiation-induced cell death. In this Review, we summarize the latest developments in the modeling of SE attachment-induced radiation damage. The initial attachment of electrons to genetic materials has traditionally been attributed to the temporary bound or resonance states. Recent studies have, however, indicated an alternative possibility with two steps. First, the dipole-bound states act as a doorway for electron capture. Subsequently, the electron gets transferred to the valence-bound state, in which the electron is localized on the nucleobase. The transfer from the dipole-bound to valence-bound state happens through a mixing of electronic and nuclear degrees of freedom. In the presence of aqueous media, the water-bound states act as the doorway state, which is similar to that of the presolvated electron. Electron transfer from the initial doorway state to the nucleobase-bound state in the presence of bulk aqueous media happens on an ultrafast time scale, and it can account for the decrease in DNA strand breaks in aqueous environments. Analyses of the theoretically obtained results along with experimental data have also been discussed.
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Affiliation(s)
- Jishnu Narayanan S J
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
| | - Divya Tripathi
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
| | - Pooja Verma
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
| | - Amitava Adhikary
- Department
of Chemistry, Oakland University, 146 Library Drive, Rochester, Michigan 48309, United States
| | - Achintya Kumar Dutta
- Department
of Chemistry, Indian Institute of Technology
Bombay, Powai, Mumbai 400076, India
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Wu B, Wang XD, Gao XF, Li H, Tian SX. Dissociative electron attachment to carbon dioxide. CHINESE J CHEM PHYS 2020. [DOI: 10.1063/1674-0068/cjcp2008152] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Bin Wu
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xu-dong Wang
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xiao-fei Gao
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Hao Li
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Shan Xi Tian
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
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Corkish TR, Haakansson CT, McKinley AJ, Wild DA. Evidence For a Water-Stabilised Ion Radical Complex: Photoelectron Spectroscopy and Ab Initio Calculations. Aust J Chem 2020. [DOI: 10.1071/ch19428] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A photoelectron spectrum corresponding to an unknown 174m/z anion complex has been recorded. Initially believed to be I−…CH3CH2OH (173m/z), the spectrum has been assigned as belonging to that of an I−…H2O…CH3CH2 radical anion complex. The major peaks in the photoelectron spectrum occur at 3.54eV and 4.48eV as the 2P3/2 and 2P1/2 spin-orbit states of iodine respectively. Ab initio calculations were performed in order to rationalise the existence of the complex, with all structures converging to a ‘ring-like’ geometry, with the iodide anion bound to both the water molecule as well as a hydrogen of the ethyl radical, with the other hydrogen of water bound to the unpaired electron site of the ethyl. Simulated vertical detachment energies of 3.59eV and 4.53eV were found to be in agreement with the experimental results.
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Kossoski F, Varella MTDN, Barbatti M. On-the-fly dynamics simulations of transient anions. J Chem Phys 2019; 151:224104. [DOI: 10.1063/1.5130547] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Affiliation(s)
- F. Kossoski
- Aix Marseille University, CNRS, ICR, Marseille, France
| | - M. T. do N. Varella
- Institute of Physics, University of São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - M. Barbatti
- Aix Marseille University, CNRS, ICR, Marseille, France
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8
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Li H, Gao XF, Meng X, Tian SX. Dissociative Electron Attachment to Molecular Acetonitrile. J Phys Chem A 2019; 123:9089-9095. [DOI: 10.1021/acs.jpca.9b07399] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hao Li
- Hefei National Laboratory for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xiao-Fei Gao
- Hefei National Laboratory for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xin Meng
- Hefei National Laboratory for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Shan Xi Tian
- Hefei National Laboratory for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
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Kovalska E, Lesongeur P, Hogan BT, Baldycheva A. Multi-layer graphene as a selective detector for future lung cancer biosensing platforms. NANOSCALE 2019; 11:2476-2483. [PMID: 30672548 DOI: 10.1039/c8nr08405j] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Highly selective, fast detection of specific lung-cancer biomarkers (CMs) in exhaled human breath is vital to the development of enhanced sensing devices. Today, e-nose is a promising approach for the diagnosis of lung cancer. Nevertheless, considerable challenges to early-stage disease diagnostics still remain: e.g. decrease in sensor sensitivities in the presence of water vapor, sensor drift leading to the inability to calibrate exactly, relatively short sensor lifetimes, and difficulty discriminating between multiple diseases. However, there is a wide scope for breath diagnostics techniques, and all advanced electrodes applicable to e-nose devices will benefit them. Here, we present the promising sensing capabilities of bare multi-layer graphene (MLG) as a proof of concept for advanced e-nose devices and demonstrate its utility for biomolecule discrimination of the most common lung CMs (ethanol, isopropanol, and acetone). We report on a comparative study involving exposure of the three CM solutions on flat MLG (f-MLG) and patterned MLG (p-MLG) electrodes, where the electrical conductivity of p-MLG is significantly increased while applying acetone. Based on sensitivity tests, we demonstrate the ability to monitor the electrical response of graphene electrodes employing graphene of various wettabilities. Specifically, the f-MLG electrode displays almost 2 times higher sheet resistance (30 Ω sq-1) compared to the hydrophilic p-MLG (12 Ω sq-1). We show significant sensitivity to selected specific molecules of pristine f-MLG and p-MLG while applying CM solutions with a 1.4 × 105 ppm concentration. Finally, we show the selectivity of f-MLG and p-MLG-based sensors when exposed to 2.0 × 105 ppm solutions containing different CM combinations. Both sensors were selective in particular to acetone, since the presence of acetone leads to a sheet resistance increase. We demonstrate that an advanced e-nose approach integrated with MLG electrodes has significant potential as a design concept for utilization of molecular detection at variable concentrations such as in early-stage disease diagnosis. This early-stage approach will provide convenient and reusable complex monitoring of CMs compared to typical contact sensors which require target analysis and are limited by disposable measuring. Moreover, further integration of the Internet of Things will introduce advanced e-nose devices as a biotechnological innovation for disease resilience with the potential for commercialization.
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Affiliation(s)
- E Kovalska
- Department of Engineering and Centre for Graphene Science, College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter, EX4 4QF, UK.
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Chandler DW, Houston PL, Parker DH. Perspective: Advanced particle imaging. J Chem Phys 2017; 147:013601. [PMID: 28688442 PMCID: PMC5648558 DOI: 10.1063/1.4983623] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Accepted: 04/18/2017] [Indexed: 11/14/2022] Open
Abstract
Since the first ion imaging experiment [D. W. Chandler and P. L. Houston, J. Chem. Phys. 87, 1445-1447 (1987)], demonstrating the capability of collecting an image of the photofragments from a unimolecular dissociation event and analyzing that image to obtain the three-dimensional velocity distribution of the fragments, the efficacy and breadth of application of the ion imaging technique have continued to improve and grow. With the addition of velocity mapping, ion/electron centroiding, and slice imaging techniques, the versatility and velocity resolution have been unmatched. Recent improvements in molecular beam, laser, sensor, and computer technology are allowing even more advanced particle imaging experiments, and eventually we can expect multi-mass imaging with co-variance and full coincidence capability on a single shot basis with repetition rates in the kilohertz range. This progress should further enable "complete" experiments-the holy grail of molecular dynamics-where all quantum numbers of reactants and products of a bimolecular scattering event are fully determined and even under our control.
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Affiliation(s)
- David W Chandler
- Sandia National Laboratories, Combustion Research Facility, Livermore, California 94550, USA
| | - Paul L Houston
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, USA
| | - David H Parker
- Department of Laser and Molecular Physics, Radboud University of Nijmegen, Nijmegen, Netherlands
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11
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Ásgeirsson V, Bauer CA, Grimme S. Unimolecular decomposition pathways of negatively charged nitriles by ab initio molecular dynamics. Phys Chem Chem Phys 2016; 18:31017-31026. [DOI: 10.1039/c6cp06180j] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ab initio MD simulations reveal mechanistic details of the fragmentation reactions of molecular anions after low-energy electron attachment.
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Affiliation(s)
- Vilhjálmur Ásgeirsson
- Mulliken Center for Theoretical Chemistry
- Institute of Physical and Theoretical Chemistry
- University of Bonn
- 53115 Bonn
- Germany
| | - Christoph A. Bauer
- Mulliken Center for Theoretical Chemistry
- Institute of Physical and Theoretical Chemistry
- University of Bonn
- 53115 Bonn
- Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry
- Institute of Physical and Theoretical Chemistry
- University of Bonn
- 53115 Bonn
- Germany
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