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Liu Y, Mulvihill E, Geva E. Combining the generalized quantum master equation approach with quasiclassical mapping Hamiltonian methods to simulate the dynamics of electronic coherences. J Chem Phys 2024; 161:164101. [PMID: 39435829 DOI: 10.1063/5.0232462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2024] [Accepted: 10/04/2024] [Indexed: 10/23/2024] Open
Abstract
The generalized quantum master equation (GQME) approach provides a powerful general-purpose framework for simulating the inherently quantum mechanical dynamics of a subset of electronic reduced density matrix elements of interest in complex molecular systems. Previous studies have found that combining the GQME approach with quasiclassical mapping Hamiltonian (QC/MH) methods can dramatically improve the accuracy of electronic populations obtained via those methods. In this paper, we perform a complimentary study of the advantages offered by the GQME approach for simulating the dynamics of electronic coherences, which play a central role in optical spectroscopy, quantum information science, and quantum technology. To this end, we focus on cases where the electronic coherences predicted for the spin-boson benchmark model by direct application of various QC/MH methods are inaccurate. We find that similar to the case of electronic populations, combining the QC/MH methods with the GQME approach can dramatically improve the accuracy of the electronic coherences obtained via those methods. We also provide a comprehensive analysis of how the performance of GQMEs depends on the choice of projection operator and electronic basis and show that the accuracy and feasibility of the GQME approach can benefit from casting the GQME in terms of the eigen-basis of the observable of interest.
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Affiliation(s)
- Yudan Liu
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Ellen Mulvihill
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
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2
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Liu Z, Lyu N, Hu Z, Zeng H, Batista VS, Sun X. Benchmarking various nonadiabatic semiclassical mapping dynamics methods with tensor-train thermo-field dynamics. J Chem Phys 2024; 161:024102. [PMID: 38980091 DOI: 10.1063/5.0208708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2024] [Accepted: 06/20/2024] [Indexed: 07/10/2024] Open
Abstract
Accurate quantum dynamics simulations of nonadiabatic processes are important for studies of electron transfer, energy transfer, and photochemical reactions in complex systems. In this comparative study, we benchmark various approximate nonadiabatic dynamics methods with mapping variables against numerically exact calculations based on the tensor-train (TT) representation of high-dimensional arrays, including TT-KSL for zero-temperature dynamics and TT-thermofield dynamics for finite-temperature dynamics. The approximate nonadiabatic dynamics methods investigated include mixed quantum-classical Ehrenfest mean-field and fewest-switches surface hopping, linearized semiclassical mapping dynamics, symmetrized quasiclassical dynamics, the spin-mapping method, and extended classical mapping models. Different model systems were evaluated, including the spin-boson model for nonadiabatic dynamics in the condensed phase, the linear vibronic coupling model for electronic transition through conical intersections, the photoisomerization model of retinal, and Tully's one-dimensional scattering models. Our calculations show that the optimal choice of approximate dynamical method is system-specific, and the accuracy is sensitively dependent on the zero-point-energy parameter and the initial sampling strategy for the mapping variables.
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Affiliation(s)
- Zengkui Liu
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Department of Chemistry, New York University, New York, New York 10003, USA
| | - Ningyi Lyu
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107, USA
| | - Zhubin Hu
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, China
| | - Hao Zeng
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, China
| | - Victor S Batista
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107, USA
| | - Xiang Sun
- Division of Arts and Sciences, NYU Shanghai, 567 West Yangsi Road, Shanghai 200124, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Department of Chemistry, New York University, New York, New York 10003, USA
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, China
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3
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Fay TP. Extending non-adiabatic rate theory to strong electronic couplings in the Marcus inverted regime. J Chem Phys 2024; 161:014101. [PMID: 38949594 DOI: 10.1063/5.0218653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 06/12/2024] [Indexed: 07/02/2024] Open
Abstract
Electron transfer reactions play an essential role in many chemical and biological processes. Fermi's golden rule (GR), which assumes that the coupling between electronic states is small, has formed the foundation of electron transfer rate theory; however, in short range electron/energy transfer reactions, this coupling can become very large, and, therefore, Fermi's GR fails to make even qualitatively accurate rate predictions. In this paper, I present a simple modified GR theory to describe electron transfer in the Marcus inverted regime at arbitrarily large electronic coupling strengths. This theory is based on an optimal global rotation of the diabatic states, which makes it compatible with existing methods for calculating GR rates that can account for nuclear quantum effects with anharmonic potentials. Furthermore, the optimal GR (OGR) theory can also be combined with analytic theories for non-adiabatic rates, such as Marcus theory and Marcus-Levich-Jortner theory, offering clear physical insights into strong electronic coupling effects in non-adiabatic processes. OGR theory is also tested on a large set of spin-boson models and an anharmonic model against exact quantum dynamics calculations, where it performs well, correctly predicting rate turnover at large coupling strengths. Finally, an example application to a boron-dipyrromethane-anthracene photosensitizer reveals that strong coupling effects inhibit excited state charge recombination in this system, reducing the rate of this process by a factor of 4. Overall, OGR theory offers a new approach to calculating electron transfer rates at strong couplings, offering new physical insights into a range of non-adiabatic processes.
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Affiliation(s)
- Thomas P Fay
- Institut de Chimie Radicalaire, Aix-Marseille Université, Campus de Saint-Jérôme, Av. Esc. Normandie Niemen, 13397 Marseille, France
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4
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Sayer T, Montoya-Castillo A. Generalized quantum master equations can improve the accuracy of semiclassical predictions of multitime correlation functions. J Chem Phys 2024; 161:011101. [PMID: 38949578 DOI: 10.1063/5.0219205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Accepted: 06/12/2024] [Indexed: 07/02/2024] Open
Abstract
Multitime quantum correlation functions are central objects in physical science, offering a direct link between the experimental observables and the dynamics of an underlying model. While experiments such as 2D spectroscopy and quantum control can now measure such quantities, the accurate simulation of such responses remains computationally expensive and sometimes impossible, depending on the system's complexity. A natural tool to employ is the generalized quantum master equation (GQME), which can offer computational savings by extending reference dynamics at a comparatively trivial cost. However, dynamical methods that can tackle chemical systems with atomistic resolution, such as those in the semiclassical hierarchy, often suffer from poor accuracy, limiting the credence one might lend to their results. By combining work on the accuracy-boosting formulation of semiclassical memory kernels with recent work on the multitime GQME, here we show for the first time that one can exploit a multitime semiclassical GQME to dramatically improve both the accuracy of coarse mean-field Ehrenfest dynamics and obtain orders of magnitude efficiency gains.
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Affiliation(s)
- Thomas Sayer
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, USA
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5
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Kim CW, Franco I. General framework for quantifying dissipation pathways in open quantum systems. I. Theoretical formulation. J Chem Phys 2024; 160:214111. [PMID: 38833366 DOI: 10.1063/5.0202860] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Accepted: 05/13/2024] [Indexed: 06/06/2024] Open
Abstract
We present a general and practical theoretical framework to investigate how energy is dissipated in open quantum system dynamics. This is performed by quantifying the contributions of individual bath components to the overall dissipation of the system. The framework is based on the Nakajima-Zwanzig projection operator technique, which allows us to express the rate of energy dissipation into a specific bath degree of freedom by using traces of operator products. The approach captures system-bath interactions to all orders, but is based on second-order perturbation theory on the off-diagonal subsystem's couplings and a Markovian description of the bath. The usefulness of our theory is demonstrated by applying it to various models of open quantum systems involving harmonic oscillators or spin baths and connecting the outcomes to existing results such as our previously reported formula derived for locally coupled harmonic baths [Kim and Franco, J. Chem. Phys. 154, 084109 (2021)]. We also prove that the dissipation calculated by our theory rigorously satisfies thermodynamic principles such as energy conservation and detailed balance. Overall, the strategy can be used to develop the theory and simulation of dissipation pathways to interpret and engineer the dynamics of open quantum systems.
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Affiliation(s)
- Chang Woo Kim
- Department of Chemistry, Chonnam National University, Gwangju 61186, South Korea
| | - Ignacio Franco
- Department of Chemistry, University of Rochester, Rochester, New York 14627, USA
- Department of Physics, University of Rochester, Rochester, New York 14627, USA
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6
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Fay TP, Limmer DT. Unraveling the mechanisms of triplet state formation in a heavy-atom free photosensitizer. Chem Sci 2024; 15:6726-6737. [PMID: 38725521 PMCID: PMC11077524 DOI: 10.1039/d4sc01369g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 03/29/2024] [Indexed: 05/12/2024] Open
Abstract
Triplet excited state generation plays a pivotal role in photosensitizers, however the reliance on transition metals and heavy atoms can limit the utility of these systems. In this study, we demonstrate that an interplay of competing quantum effects controls the high triplet quantum yield in a prototypical boron dipyrromethene-anthracene (BD-An) donor-acceptor dyad photosensitizer, which is only captured by an accurate treatment of both inner and outer sphere reorganization energies. Our ab initio-derived model provides excellent agreement with experimentally measured spectra, triplet yields and excited state kinetic data, including the triplet lifetime. We find that rapid triplet state formation occurs primarily via high-energy triplet states through both spin-orbit coupled charge transfer and El-Sayed's rule breaking intersystem crossing, rather than direct spin-orbit coupled charge transfer to the lowest lying triplet state. Our calculations also reveal that competing effects of nuclear tunneling, electronic state recrossing, and electronic polarizability dictate the rate of non-productive ground state recombination. This study sheds light on the quantum effects driving efficient triplet formation in the BD-An system, and offers a promising simulation methodology for diverse photochemical systems.
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Affiliation(s)
- Thomas P Fay
- Department of Chemistry, University of California Berkeley CA 94720 USA
| | - David T Limmer
- Department of Chemistry, University of California Berkeley CA 94720 USA
- Kavli Energy Nanoscience Institute Berkeley CA 94720 USA
- Chemical Science Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
- Material Science Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
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7
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Sayer T, Montoya-Castillo A. Efficient formulation of multitime generalized quantum master equations: Taming the cost of simulating 2D spectra. J Chem Phys 2024; 160:044108. [PMID: 38270238 DOI: 10.1063/5.0185578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 12/26/2023] [Indexed: 01/26/2024] Open
Abstract
Modern 4-wave mixing spectroscopies are expensive to obtain experimentally and computationally. In certain cases, the unfavorable scaling of quantum dynamics problems can be improved using a generalized quantum master equation (GQME) approach. However, the inclusion of multiple (light-matter) interactions complicates the equation of motion and leads to seemingly unavoidable cubic scaling in time. In this paper, we present a formulation that greatly simplifies and reduces the computational cost of previous work that extended the GQME framework to treat arbitrary numbers of quantum measurements. Specifically, we remove the time derivatives of quantum correlation functions from the modified Mori-Nakajima-Zwanzig framework by switching to a discrete-convolution implementation inspired by the transfer tensor approach. We then demonstrate the method's capabilities by simulating 2D electronic spectra for the excitation-energy-transfer dimer model. In our method, the resolution of data can be arbitrarily coarsened, especially along the t2 axis, which mirrors how the data are obtained experimentally. Even in a modest case, this demands O(103) fewer data points. We are further able to decompose the spectra into one-, two-, and three-time correlations, showing how and when the system enters a Markovian regime where further measurements are unnecessary to predict future spectra and the scaling becomes quadratic. This offers the ability to generate long-time spectra using only short-time data, enabling access to timescales previously beyond the reach of standard methodologies.
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Affiliation(s)
- Thomas Sayer
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, USA
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8
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Montoya-Castillo A, Markland TE. A derivation of the conditions under which bosonic operators exactly capture fermionic structure and dynamics. J Chem Phys 2023; 158:094112. [PMID: 36889969 DOI: 10.1063/5.0138664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2023] Open
Abstract
The dynamics of many-body fermionic systems are important in problems ranging from catalytic reactions at electrochemical surfaces to transport through nanojunctions and offer a prime target for quantum computing applications. Here, we derive the set of conditions under which fermionic operators can be exactly replaced by bosonic operators that render the problem amenable to a large toolbox of dynamical methods while still capturing the correct dynamics of n-body operators. Importantly, our analysis offers a simple guide on how one can exploit these simple maps to calculate nonequilibrium and equilibrium single- and multi-time correlation functions essential in describing transport and spectroscopy. We use this to rigorously analyze and delineate the applicability of simple yet effective Cartesian maps that have been shown to correctly capture the correct fermionic dynamics in select models of nanoscopic transport. We illustrate our analytical results with exact simulations of the resonant level model. Our work provides new insights as to when one can leverage the simplicity of bosonic maps to simulate the dynamics of many-electron systems, especially those where an atomistic representation of nuclear interactions becomes essential.
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Affiliation(s)
| | - Thomas E Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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9
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Lyu N, Mulvihill E, Soley MB, Geva E, Batista VS. Tensor-Train Thermo-Field Memory Kernels for Generalized Quantum Master Equations. J Chem Theory Comput 2023; 19:1111-1129. [PMID: 36719350 DOI: 10.1021/acs.jctc.2c00892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The generalized quantum master equation (GQME) approach provides a rigorous framework for deriving the exact equation of motion for any subset of electronic reduced density matrix elements (e.g., the diagonal elements). In the context of electronic dynamics, the memory kernel and inhomogeneous term of the GQME introduce the implicit coupling to nuclear motion and dynamics of electronic density matrix elements that are projected out (e.g., the off-diagonal elements), allowing for efficient quantum dynamics simulations. Here, we focus on benchmark quantum simulations of electronic dynamics in a spin-boson model system described by various types of GQMEs. Exact memory kernels and inhomogeneous terms are obtained from short-time quantum-mechanically exact tensor-train thermo-field dynamics (TT-TFD) simulations and are compared with those obtained from an approximate linearized semiclassical method, allowing for assessment of the accuracy of these approximate memory kernels and inhomogeneous terms. Moreover, we have analyzed the computational cost of the full and reduced-dimensionality GQMEs. The scaling of the computational cost is dependent on several factors, sometimes with opposite scaling trends. The TT-TFD memory kernels can provide insights on the main sources of inaccuracies of GQME approaches when combined with approximate input methods and pave the road for the development of quantum circuits that implement GQMEs on digital quantum computers.
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Affiliation(s)
- Ningyi Lyu
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Ellen Mulvihill
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Micheline B Soley
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States.,Yale Quantum Institute, Yale University, New Haven, Connecticut 06511, United States.,Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Victor S Batista
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States.,Yale Quantum Institute, Yale University, New Haven, Connecticut 06511, United States
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10
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Sayer T, Montoya-Castillo A. Compact and complete description of non-Markovian dynamics. J Chem Phys 2023; 158:014105. [PMID: 36610963 DOI: 10.1063/5.0132614] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Generalized master equations provide a theoretically rigorous framework to capture the dynamics of processes ranging from energy harvesting in plants and photovoltaic devices to qubit decoherence in quantum technologies and even protein folding. At their center is the concept of memory. The explicit time-nonlocal description of memory is both protracted and elaborate. When physical intuition is at a premium, one would desire a more compact, yet complete, description. Here, we demonstrate how and when the time-convolutionless formalism constitutes such a description. In particular, by focusing on the dissipative dynamics of the spin-boson and Frenkel exciton models, we show how to: easily construct the time-local generator from reference reduced dynamics, elucidate the dependence of its existence on the system parameters and the choice of reduced observables, identify the physical origin of its apparent divergences, and offer analysis tools to diagnose their severity and circumvent their deleterious effects. We demonstrate that, when applicable, the time-local approach requires as little information as the more commonly used time-nonlocal scheme, with the important advantages of providing a more compact description, greater algorithmic simplicity, and physical interpretability. We conclude by introducing the discrete-time analog and a straightforward protocol to employ it in cases where the reference dynamics have limited resolution. The insights we present here offer the potential for extending the reach of dynamical methods, reducing both their cost and conceptual complexity.
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Affiliation(s)
- Thomas Sayer
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, USA
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11
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Amati G, Saller MAC, Kelly A, Richardson JO. Quasiclassical approaches to the generalized quantum master equation. J Chem Phys 2022; 157:234103. [PMID: 36550031 DOI: 10.1063/5.0124028] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
The formalism of the generalized quantum master equation (GQME) is an effective tool to simultaneously increase the accuracy and the efficiency of quasiclassical trajectory methods in the simulation of nonadiabatic quantum dynamics. The GQME expresses correlation functions in terms of a non-Markovian equation of motion, involving memory kernels that are typically fast-decaying and can therefore be computed by short-time quasiclassical trajectories. In this paper, we study the approximate solution of the GQME, obtained by calculating the kernels with two methods: Ehrenfest mean-field theory and spin-mapping. We test the approaches on a range of spin-boson models with increasing energy bias between the two electronic levels and place a particular focus on the long-time limits of the populations. We find that the accuracy of the predictions of the GQME depends strongly on the specific technique used to calculate the kernels. In particular, spin-mapping outperforms Ehrenfest for all the systems studied. The problem of unphysical negative electronic populations affecting spin-mapping is resolved by coupling the method with the master equation. Conversely, Ehrenfest in conjunction with the GQME can predict negative populations, despite the fact that the populations calculated from direct dynamics are positive definite.
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Affiliation(s)
- Graziano Amati
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | | | - Aaron Kelly
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Max Planck Institute for the Structure and Dynamics of Matter and Center for Free-Electron Laser Science, 22761 Hamburg, Germany
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12
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Mulvihill E, Geva E. Simulating the dynamics of electronic observables via reduced-dimensionality generalized quantum master equations. J Chem Phys 2022; 156:044119. [DOI: 10.1063/5.0078040] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Affiliation(s)
- Ellen Mulvihill
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
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13
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Lai Y, Geva E. On simulating the dynamics of electronic populations and coherences via quantum master equations based on treating off-diagonal electronic coupling terms as a small perturbation. J Chem Phys 2021; 155:204101. [PMID: 34852488 DOI: 10.1063/5.0069313] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Quantum master equations provide a general framework for describing the dynamics of electronic observables within a complex molecular system. One particular family of such equations is based on treating the off-diagonal coupling terms between electronic states as a small perturbation within the framework of second-order perturbation theory. In this paper, we show how different choices of projection operators, as well as whether one starts out with the time-convolution or the time-convolutionless forms of the generalized quantum master equation, give rise to four different types of such off-diagonal quantum master equations (OD-QMEs), namely, time-convolution and time-convolutionless versions of a Pauli-type OD-QME for only the electronic populations and an OD-QME for the full electronic density matrix (including both electronic populations and coherences). The fact that those OD-QMEs are given in terms of the interaction picture makes it non-trivial to obtain Schrödinger picture electronic coherences from them. To address this, we also extend a procedure for extracting Schrödinger picture electronic coherences from interaction picture populations recently introduced by Trushechkin in the context of time-convolutionless Pauli-type OD-QME to the other three types of OD-QMEs. The performance of the aforementioned four types of OD-QMEs is explored in the context of the Garg-Onuchic-Ambegaokar benchmark model for charge transfer in the condensed phase across a relatively wide parameter range. The results show that time-convolution OD-QMEs can be significantly more accurate than their time-convolutionless counterparts, particularly in the case of Pauli-type OD-QMEs, and that rather accurate Schrödinger picture coherences can be obtained from interaction picture electronic inputs.
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Affiliation(s)
- Yifan Lai
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
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14
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Choi S, Vaníček J. High-order geometric integrators for representation-free Ehrenfest dynamics. J Chem Phys 2021; 155:124104. [PMID: 34598577 DOI: 10.1063/5.0061878] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Ehrenfest dynamics is a useful approximation for ab initio mixed quantum-classical molecular dynamics that can treat electronically nonadiabatic effects. Although a severe approximation to the exact solution of the molecular time-dependent Schrödinger equation, Ehrenfest dynamics is symplectic, is time-reversible, and conserves exactly the total molecular energy as well as the norm of the electronic wavefunction. Here, we surpass apparent complications due to the coupling of classical nuclear and quantum electronic motions and present efficient geometric integrators for "representation-free" Ehrenfest dynamics, which do not rely on a diabatic or adiabatic representation of electronic states and are of arbitrary even orders of accuracy in the time step. These numerical integrators, obtained by symmetrically composing the second-order splitting method and exactly solving the kinetic and potential propagation steps, are norm-conserving, symplectic, and time-reversible regardless of the time step used. Using a nonadiabatic simulation in the region of a conical intersection as an example, we demonstrate that these integrators preserve the geometric properties exactly and, if highly accurate solutions are desired, can be even more efficient than the most popular non-geometric integrators.
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Affiliation(s)
- Seonghoon Choi
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jiří Vaníček
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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15
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Mulvihill E, Geva E. A Road Map to Various Pathways for Calculating the Memory Kernel of the Generalized Quantum Master Equation. J Phys Chem B 2021; 125:9834-9852. [PMID: 34424700 DOI: 10.1021/acs.jpcb.1c05719] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The generalized quantum master equation (GQME) provides a powerful framework for simulating electronic energy, charge, and coherence transfer dynamics in molecular systems. Within this framework, the effect of the nuclear degrees of freedom on the time evolution of the electronic reduced density matrix is fully captured by a memory kernel superoperator. However, the actual memory kernel depends on the choice of projection operator and is therefore not unique. Furthermore, calculating the memory kernel can be done in multiple ways that use different forms of projection-free inputs. Although the electronic dynamics is invariant to those choices when quantum-mechanically exact projection-free inputs are used, this is not the case when they are obtained via more feasible semiclassical or mixed quantum-classical approximate methods. Furthermore, the accuracy and numerical stability of the resulting electronic dynamics has been observed to be sensitive to the above-mentioned choices when approximate methods are used to calculate the projection-free inputs. In this article, we provide a systematic road map to 30 possible pathways for calculating the memory kernel and highlight how they are related as well as the ways in which they differ. We also compare the performance of different pathways in the context of the spin-boson benchmark model, with the projection-free inputs obtained via a mapping Hamiltonian linearized semiclassical method. In this case, we find that expressing the memory kernel with an exponential operator where the projection operator precedes the Liouvillian yields the most accurate and most numerically stable results.
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Affiliation(s)
- Ellen Mulvihill
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan48109, United States
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan48109, United States
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16
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Mulvihill E, Lenn KM, Gao X, Schubert A, Dunietz BD, Geva E. Simulating energy transfer dynamics in the Fenna-Matthews-Olson complex via the modified generalized quantum master equation. J Chem Phys 2021; 154:204109. [PMID: 34241158 DOI: 10.1063/5.0051101] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The generalized quantum master equation (GQME) provides a general and formally exact framework for simulating the reduced dynamics of open quantum systems. The recently introduced modified approach to the GQME (M-GQME) corresponds to a specific implementation of the GQME that is geared toward simulating the dynamics of the electronic reduced density matrix in systems governed by an excitonic Hamiltonian. Such a Hamiltonian, which is often used for describing energy and charge transfer dynamics in complex molecular systems, is given in terms of diabatic electronic states that are coupled to each other and correspond to different nuclear Hamiltonians. Within the M-GQME approach, the effect of the nuclear degrees of freedom on the time evolution of the electronic density matrix is fully captured by a memory kernel superoperator, which can be obtained from short-lived (compared to the time scale of energy/charge transfer) projection-free inputs. In this paper, we test the ability of the M-GQME to predict the energy transfer dynamics within a seven-state benchmark model of the Fenna-Matthews-Olson (FMO) complex, with the short-lived projection-free inputs obtained via the Ehrenfest method. The M-GQME with Ehrenfest-based inputs is shown to yield accurate results across a wide parameter range. It is also found to dramatically outperform the direct application of the Ehrenfest method and to provide better-behaved convergence with respect to memory time in comparison to an alternative implementation of the GQME approach previously applied to the same FMO model.
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Affiliation(s)
- Ellen Mulvihill
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Kristina M Lenn
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Xing Gao
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Alexander Schubert
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Barry D Dunietz
- Department of Chemistry and Biochemistry, Kent State University, Kent, Ohio 44242, USA
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
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17
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Santoro F, Green JA, Martinez-Fernandez L, Cerezo J, Improta R. Quantum and semiclassical dynamical studies of nonadiabatic processes in solution: achievements and perspectives. Phys Chem Chem Phys 2021; 23:8181-8199. [PMID: 33875988 DOI: 10.1039/d0cp05907b] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We concisely review the main methodological approaches to model nonadiabatic dynamics in isotropic solutions and their applications. Three general classes of models are identified as the most used to include solvent effects in the simulations. The first model describes the solvent as a set of harmonic collective modes coupled to the solute degrees of freedom, and the second as a continuum, while the third explicitly includes solvent molecules in the calculations. The issues related to the use of these models in semiclassical and quantum dynamical simulations are discussed, as well as the main limitations and perspectives of each approach.
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Affiliation(s)
- Fabrizio Santoro
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), SS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy.
| | - James A Green
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Biostrutture e Bioimmagini (IBB-CNR), via Mezzocannone 16, I-80136 Napoli, Italy.
| | - Lara Martinez-Fernandez
- Departamento de Química, Facultad de Ciencias and Institute for Advanced Research in Chemistry (IADCHEM), Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, 28049 Madrid, Spain
| | - Javier Cerezo
- Departamento de Química, Facultad de Ciencias and Institute for Advanced Research in Chemistry (IADCHEM), Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, 28049 Madrid, Spain
| | - Roberto Improta
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Biostrutture e Bioimmagini (IBB-CNR), via Mezzocannone 16, I-80136 Napoli, Italy.
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18
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Chowdhury SN, Huo P. Non-adiabatic Matsubara dynamics and non-adiabatic ring-polymer molecular dynamics. J Chem Phys 2021; 154:124124. [PMID: 33810665 DOI: 10.1063/5.0042136] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
We present the non-adiabatic Matsubara dynamics, a general framework for computing the time-correlation function (TCF) of electronically non-adiabatic systems. This new formalism is derived based on the generalized Kubo-transformed TCF using the Wigner representation for both the nuclear degrees of freedom and the electronic mapping variables. By dropping the non-Matsubara nuclear normal modes in the quantum Liouvillian and explicitly integrating these modes out from the expression of the TCF, we derived the non-adiabatic Matsubara dynamics approach. Further making the approximation to drop the imaginary part of the Matsubara Liouvillian and enforce the nuclear momentum integral to be real, we arrived at the non-adiabatic ring-polymer molecular dynamics (NRPMD) approach. We have further justified the capability of NRPMD for simulating the non-equilibrium TCF. This work provides the rigorous theoretical foundation for several recently proposed state-dependent RPMD approaches and offers a general framework for developing new non-adiabatic quantum dynamics methods in the future.
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Affiliation(s)
- Sutirtha N Chowdhury
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
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19
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Abstract
We introduce a simple and effective method to decompose the energy dissipation in the dynamics of open quantum systems into contributions due to individual bath components. The method is based on a vibronic extension of the Förster resonance energy transfer theory that enables quantifying the energy dissipated by specific bath degrees of freedom. Its accuracy is determined by benchmarking against mixed quantum-classical simulations that reveal that the method provides a semi-quantitative frequency-dependent decomposition of the overall dissipation. The utility of the method is illustrated by using a model donor-acceptor pair interacting to a thermal harmonic bath with different coupling strengths. The method can be used to identify the key features of a bath that leads to energy dissipation as required to develop a deep understanding of the dynamics of open quantum systems and to engineer environments with desired dissipative features.
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Affiliation(s)
- Chang Woo Kim
- Department of Chemistry, University of Rochester, Rochester, New York 14627, USA
| | - Ignacio Franco
- Department of Chemistry, University of Rochester, Rochester, New York 14627, USA
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20
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Cao S, Montoya-Castillo A, Wang W, Markland TE, Huang X. On the advantages of exploiting memory in Markov state models for biomolecular dynamics. J Chem Phys 2021; 153:014105. [PMID: 32640825 DOI: 10.1063/5.0010787] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
Biomolecular dynamics play an important role in numerous biological processes. Markov State Models (MSMs) provide a powerful approach to study these dynamic processes by predicting long time scale dynamics based on many short molecular dynamics (MD) simulations. In an MSM, protein dynamics are modeled as a kinetic process consisting of a series of Markovian transitions between different conformational states at discrete time intervals (called "lag time"). To achieve this, a master equation must be constructed with a sufficiently long lag time to allow interstate transitions to become truly Markovian. This imposes a major challenge for MSM studies of proteins since the lag time is bound by the length of relatively short MD simulations available to estimate the frequency of transitions. Here, we show how one can employ the generalized master equation formalism to obtain an exact description of protein conformational dynamics both at short and long time scales without the time resolution restrictions imposed by the MSM lag time. Using a simple kinetic model, alanine dipeptide, and WW domain, we demonstrate that it is possible to construct these quasi-Markov State Models (qMSMs) using MD simulations that are 5-10 times shorter than those required by MSMs. These qMSMs only contain a handful of metastable states and, thus, can greatly facilitate the interpretation of mechanisms associated with protein dynamics. A qMSM opens the door to the study of conformational changes of complex biomolecules where a Markovian model with a few states is often difficult to construct due to the limited length of available MD simulations.
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Affiliation(s)
- Siqin Cao
- Department of Chemistry, The Hong Kong University of Science and Technology, Kowloon, Hong Kong
| | | | - Wei Wang
- Department of Chemistry, The Hong Kong University of Science and Technology, Kowloon, Hong Kong
| | - Thomas E Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Xuhui Huang
- Department of Chemistry, The Hong Kong University of Science and Technology, Kowloon, Hong Kong
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21
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Mannouch JR, Richardson JO. A partially linearized spin-mapping approach for nonadiabatic dynamics. I. Derivation of the theory. J Chem Phys 2020; 153:194109. [DOI: 10.1063/5.0031168] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Kim CW, Rhee YM. Toward monitoring the dissipative vibrational energy flows in open quantum systems by mixed quantum-classical simulations. J Chem Phys 2020; 152:244109. [PMID: 32610983 DOI: 10.1063/5.0009867] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
In open quantum system dynamics, rich information about the major energy relaxation channels and corresponding relaxation rates can be elucidated by monitoring the vibrational energy flow among individual bath modes. However, such calculations often become tremendously difficult as the complexity of the subsystem-bath coupling increases. In this paper, we attempt to make this task feasible by using a mixed quantum-classical method, the Poisson-bracket mapping equation with non-Hamiltonian modification (PBME-nH) [H. W. Kim and Y. M. Rhee, J. Chem. Phys. 140, 184106 (2014)]. For a quantum subsystem bilinearly coupled to harmonic bath modes, we derive an expression for the mode energy in terms of the classical positions and momenta of the nuclei, while keeping consistency with the energy of the quantum subsystem. The accuracy of the resulting expression is then benchmarked against a numerically exact method by using relatively simple models. Although our expression predicts a qualitatively correct dissipation rate for a range of situations, cases involving a strong vibronic resonance are quite challenging. This is attributed to the inherent lack of quantum back reaction in PBME-nH, which becomes significant when the subsystem strongly interacts with a small number of bath modes. A rigorous treatment of such an effect will be crucial for developing quantitative simulation methods that can handle generic subsystem-bath coupling.
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Affiliation(s)
- Chang Woo Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, South Korea
| | - Young Min Rhee
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, South Korea
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23
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Braver Y, Valkunas L, Gelzinis A. Benchmarking the forward–backward trajectory solution of the quantum-classical Liouville equation. J Chem Phys 2020; 152:214116. [DOI: 10.1063/5.0006538] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yakov Braver
- Institute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio Ave. 9-III, LT-10222 Vilnius, Lithuania
- Department of Molecular Compound Physics, Center for Physical Sciences and Technology, Saulėtekio Ave. 3, LT-10257 Vilnius, Lithuania
| | - Leonas Valkunas
- Institute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio Ave. 9-III, LT-10222 Vilnius, Lithuania
- Department of Molecular Compound Physics, Center for Physical Sciences and Technology, Saulėtekio Ave. 3, LT-10257 Vilnius, Lithuania
| | - Andrius Gelzinis
- Institute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio Ave. 9-III, LT-10222 Vilnius, Lithuania
- Department of Molecular Compound Physics, Center for Physical Sciences and Technology, Saulėtekio Ave. 3, LT-10257 Vilnius, Lithuania
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24
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Gao X, Saller MAC, Liu Y, Kelly A, Richardson JO, Geva E. Benchmarking Quasiclassical Mapping Hamiltonian Methods for Simulating Electronically Nonadiabatic Molecular Dynamics. J Chem Theory Comput 2020; 16:2883-2895. [DOI: 10.1021/acs.jctc.9b01267] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xing Gao
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
| | | | - Yudan Liu
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Aaron Kelly
- Department of Chemistry, Dalhousie University, 15000 Halifax, Nova Scotia, Canada
| | | | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
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25
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Abstract
Dynamics at molecule-metal interfaces are a subject of intense current interest and come in many different flavors of experiments: gas-phase scattering, chemisorption, electrochemistry, nanojunction transport, and heterogeneous catalysis, to name a few. These dynamics involve nuclear degrees of freedom entangled with many electronic degrees of freedom (in the metal), and as such there is always the possibility for nonadiabatic phenomena to appear: the nuclei do not necessarily need to move slower than the electrons to break the Born-Oppenheimer (BO) approximation. In this Feature Article, we review a set of dynamical methods developed recently to deal with such nonadiabatic phenomena at a metal surface, methods that serve as alternatives to Tully's independent electron surface hopping (IESH) model. In the weak molecule-metal coupling regime, a classical master equation (CME) can be derived and a simple surface hopping approach is proposed to propagate nuclear and electronic dynamics stochastically. In the strong molecule-metal interaction regime, a Fokker-Planck equation can be derived for the nuclear dynamics, with electronic DoFs incorporated into the overall friction and random force. Lastly, a broadened classical master equation (BCME) can interpolate between the weak and strong molecule-metal interactions. Here, we briefly review these methods and the relevant benchmarking data, showing in particular how the methods can be used to calculate nonequilibrium transport properties. We highlight several open questions and pose several avenues for future study.
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Affiliation(s)
- Wenjie Dou
- Department of Chemistry , University of California, Berkeley , Berkeley , California 94720 , United States
| | - Joseph E Subotnik
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104 , United States
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26
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Saller MAC, Kelly A, Richardson JO. Improved population operators for multi-state nonadiabatic dynamics with the mixed quantum-classical mapping approach. Faraday Discuss 2020; 221:150-167. [DOI: 10.1039/c9fd00050j] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Application to the 7-state Frenkel-exciton Hamiltonian for the Fenna–Matthews–Olson complex shows that using a different representation of the electronic population operators can drastically improve the accuracy of the quasiclassical mapping approach without increasing the computational effort.
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Affiliation(s)
| | - Aaron Kelly
- Department of Chemistry
- Dalhousie University
- Halifax
- Canada
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27
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Kelly A. Exciton dissociation and charge separation at donor–acceptor interfaces from quantum-classical dynamics simulations. Faraday Discuss 2020; 221:547-563. [DOI: 10.1039/c9fd00069k] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nonadiabatic dynamics simulations based on the quantum-classical Liouville equation are employed to study the real-time dynamics of exciton dissociation and charge separation at a model donor–acceptor interface.
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Affiliation(s)
- Aaron Kelly
- Department of Chemistry
- Dalhousie University
- Halifax
- Canada
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28
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Chatterjee S, Makri N. Real-Time Path Integral Methods, Quantum Master Equations, and Classical vs Quantum Memory. J Phys Chem B 2019; 123:10470-10482. [DOI: 10.1021/acs.jpcb.9b08429] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sambarta Chatterjee
- Department of Chemistry, University of Illinois, 505 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Nancy Makri
- Department of Chemistry, University of Illinois, 505 South Mathews Avenue, Urbana, Illinois 61801, United States
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29
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Mulvihill E, Gao X, Liu Y, Schubert A, Dunietz BD, Geva E. Combining the mapping Hamiltonian linearized semiclassical approach with the generalized quantum master equation to simulate electronically nonadiabatic molecular dynamics. J Chem Phys 2019; 151:074103. [DOI: 10.1063/1.5110891] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ellen Mulvihill
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Xing Gao
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Yudan Liu
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Alexander Schubert
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
- Department of Chemistry and Biochemistry, Kent State University, Kent, Ohio 44242, USA
| | - Barry D. Dunietz
- Department of Chemistry and Biochemistry, Kent State University, Kent, Ohio 44242, USA
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
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30
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Runeson JE, Richardson JO. Spin-mapping approach for nonadiabatic molecular dynamics. J Chem Phys 2019; 151:044119. [DOI: 10.1063/1.5100506] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Johan E. Runeson
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
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31
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He X, Liu J. A new perspective for nonadiabatic dynamics with phase space mapping models. J Chem Phys 2019; 151:024105. [DOI: 10.1063/1.5108736] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Xin He
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Jian Liu
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
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32
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Pfalzgraff WC, Montoya-Castillo A, Kelly A, Markland TE. Efficient construction of generalized master equation memory kernels for multi-state systems from nonadiabatic quantum-classical dynamics. J Chem Phys 2019; 150:244109. [DOI: 10.1063/1.5095715] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- William C. Pfalzgraff
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
- Department of Chemistry, Chatham University, Pittsburgh, Pennsylvania 15232, USA
| | | | - Aaron Kelly
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada
| | - Thomas E. Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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33
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Chowdhury SN, Huo P. State dependent ring polymer molecular dynamics for investigating excited nonadiabatic dynamics. J Chem Phys 2019; 150:244102. [DOI: 10.1063/1.5096276] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sutirtha N. Chowdhury
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
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34
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Kelly A. Mean field theory of thermal energy transport in molecular junctions. J Chem Phys 2019; 150:204107. [DOI: 10.1063/1.5089885] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Aaron Kelly
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada
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35
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Saller MAC, Kelly A, Richardson JO. On the identity of the identity operator in nonadiabatic linearized semiclassical dynamics. J Chem Phys 2019; 150:071101. [DOI: 10.1063/1.5082596] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - Aaron Kelly
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada
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36
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Mulvihill E, Schubert A, Sun X, Dunietz BD, Geva E. A modified approach for simulating electronically nonadiabatic dynamics via the generalized quantum master equation. J Chem Phys 2019; 150:034101. [DOI: 10.1063/1.5055756] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ellen Mulvihill
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Alexander Schubert
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
- Department of Chemistry and Biochemistry, Kent State University, Kent, Ohio 44242, USA
| | - Xiang Sun
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Barry D. Dunietz
- Department of Chemistry and Biochemistry, Kent State University, Kent, Ohio 44242, USA
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA
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37
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Mandal A, Shakib FA, Huo P. Investigating photoinduced proton coupled electron transfer reaction using quasi diabatic dynamics propagation. J Chem Phys 2018; 148:244102. [DOI: 10.1063/1.5030634] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Affiliation(s)
- Arkajit Mandal
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
| | - Farnaz A. Shakib
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
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38
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Hsieh CY, Cao J. A unified stochastic formulation of dissipative quantum dynamics. II. Beyond linear response of spin baths. J Chem Phys 2018; 148:014104. [PMID: 29306289 DOI: 10.1063/1.5018726] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We use the "generalized hierarchical equation of motion" proposed in Paper I [C.-Y. Hsieh and J. Cao, J. Chem. Phys. 148, 014103 (2018)] to study decoherence in a system coupled to a spin bath. The present methodology allows a systematic incorporation of higher-order anharmonic effects of the bath in dynamical calculations. We investigate the leading order corrections to the linear response approximations for spin bath models. Two kinds of spin-based environments are considered: (1) a bath of spins discretized from a continuous spectral density and (2) a bath of localized nuclear or electron spins. The main difference resides with how the bath frequency and the system-bath coupling parameters are distributed in an environment. When discretized from a continuous spectral density, the system-bath coupling typically scales as ∼1/NB where NB is the number of bath spins. This scaling suppresses the non-Gaussian characteristics of the spin bath and justifies the linear response approximations in the thermodynamic limit. For the nuclear/electron spin bath models, system-bath couplings are directly deduced from spin-spin interactions and do not necessarily obey the 1/NB scaling. It is not always possible to justify the linear response approximations in this case. Furthermore, if the spin-spin Hamiltonian is highly symmetrical, there exist additional constraints that generate highly non-Markovian and persistent dynamics that is beyond the linear response treatments.
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Affiliation(s)
- Chang-Yu Hsieh
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
| | - Jianshu Cao
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA
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39
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Xu M, Yan Y, Liu Y, Shi Q. Convergence of high order memory kernels in the Nakajima-Zwanzig generalized master equation and rate constants: Case study of the spin-boson model. J Chem Phys 2018; 148:164101. [DOI: 10.1063/1.5022761] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Meng Xu
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yaming Yan
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yanying Liu
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qiang Shi
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
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40
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Mandal A, Yamijala SSRKC, Huo P. Quasi-Diabatic Representation for Nonadiabatic Dynamics Propagation. J Chem Theory Comput 2018; 14:1828-1840. [DOI: 10.1021/acs.jctc.7b01178] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Arkajit Mandal
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| | - Sharma SRKC Yamijala
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
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41
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Dou W, Subotnik JE. A Generalized Surface Hopping Algorithm To Model Nonadiabatic Dynamics near Metal Surfaces: The Case of Multiple Electronic Orbitals. J Chem Theory Comput 2017; 13:2430-2439. [DOI: 10.1021/acs.jctc.7b00094] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Wenjie Dou
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Joseph E. Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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42
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Montoya-Castillo A, Reichman DR. Approximate but accurate quantum dynamics from the Mori formalism. II. Equilibrium time correlation functions. J Chem Phys 2017; 146:084110. [DOI: 10.1063/1.4975388] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - David R. Reichman
- Department of Chemistry, Columbia University, New York, New York 10027, USA
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43
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Dou W, Subotnik JE. A many-body states picture of electronic friction: The case of multiple orbitals and multiple electronic states. J Chem Phys 2016; 145:054102. [DOI: 10.1063/1.4959604] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Wenjie Dou
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Joseph E. Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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Lee MK, Huo P, Coker DF. Semiclassical Path Integral Dynamics: Photosynthetic Energy Transfer with Realistic Environment Interactions. Annu Rev Phys Chem 2016; 67:639-68. [DOI: 10.1146/annurev-physchem-040215-112252] [Citation(s) in RCA: 96] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Mi Kyung Lee
- Department of Chemistry, Boston University, Boston, Massachusetts 02215;
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, Rochester, New York 14627;
| | - David F. Coker
- Department of Chemistry, Boston University, Boston, Massachusetts 02215;
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Montoya-Castillo A, Reichman DR. Approximate but accurate quantum dynamics from the Mori formalism: I. Nonequilibrium dynamics. J Chem Phys 2016; 144:184104. [DOI: 10.1063/1.4948408] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
| | - David R. Reichman
- Department of Chemistry, Columbia University, New York, New York 10027, USA
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46
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Kelly A, Montoya-Castillo A, Wang L, Markland TE. Generalized quantum master equations in and out of equilibrium: When can one win? J Chem Phys 2016; 144:184105. [DOI: 10.1063/1.4948612] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Affiliation(s)
- Aaron Kelly
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | | | - Lu Wang
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, USA
| | - Thomas E. Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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47
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Lingerfelt DB, Williams-Young DB, Petrone A, Li X. Direct ab Initio (Meta-)Surface-Hopping Dynamics. J Chem Theory Comput 2016; 12:935-45. [DOI: 10.1021/acs.jctc.5b00697] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- David B. Lingerfelt
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | | | - Alessio Petrone
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Xiaosong Li
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
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48
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Pfalzgraff WC, Kelly A, Markland TE. Nonadiabatic Dynamics in Atomistic Environments: Harnessing Quantum-Classical Theory with Generalized Quantum Master Equations. J Phys Chem Lett 2015; 6:4743-4748. [PMID: 26563917 DOI: 10.1021/acs.jpclett.5b02131] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The development of methods that can efficiently and accurately treat nonadiabatic dynamics in quantum systems coupled to arbitrary atomistic environments remains a significant challenge in problems ranging from exciton transport in photovoltaic materials to electron and proton transfer in catalysis. Here we show that our recently introduced MF-GQME approach, which combines Ehrenfest mean field theory with the generalized quantum master equation framework, is able to yield quantitative accuracy over a wide range of charge-transfer regimes in fully atomistic environments. This is accompanied by computational speed-ups of up to 3 orders of magnitude over a direct application of Ehrenfest theory. This development offers the opportunity to efficiently investigate the atomistic details of nonadiabatic quantum relaxation processes in regimes where obtaining accurate results has previously been elusive.
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Affiliation(s)
- William C Pfalzgraff
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
| | - Aaron Kelly
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
| | - Thomas E Markland
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
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