Proton transfer in histidine-tryptophan heterodimers embedded in helium droplets

Unnatural Amino Acids for Biological Spectroscopy and Microscopy

Due to advances in methods for site-specific incorporation of unnatural amino acids (UAAs) into proteins, a large number of UAAs with tailored chemical and/or physical properties have been developed and used in a wide array of biological applications. In particular, UAAs with specific spectroscopic characteristics can be used as external reporters to produce additional signals, hence increasing the information content obtainable in protein spectroscopic and/or imaging measurements. In this Review, we summarize the progress in the past two decades in the development of such UAAs and their applications in biological spectroscopy and microscopy, with a focus on UAAs that can be used as site-specific vibrational, fluorescence, electron paramagnetic resonance (EPR), or nuclear magnetic resonance (NMR) probes. Wherever applicable, we also discuss future directions.

Neutral Peptides in the Gas Phase: Conformation and Aggregation Issues

Combined IR and UV laser spectroscopic techniques in molecular beams merged with theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural properties on a molecular level. It offers the possibility to analyze structural changes, in a controlled molecular environment, when successively adding aggregation partners. By this, it further makes these techniques a valuable starting point for a bottom-up approach in understanding the forces shaping larger molecular systems. This bottom-up approach was successfully applied to neutral amino acids starting around the 1990s. Ever since, experimental and theoretical methods developed further, and investigations could be extended to larger peptide systems. Against this background, the review gives an introduction to secondary structures and experimental methods as well as a summary on theoretical approaches. Vibrational frequencies being characteristic probes of molecular structure and interactions are especially addressed. Archetypal biologically relevant secondary structures investigated by molecular beam spectroscopy are described, and the influences of specific peptide residues on conformational preferences as well as the competition between secondary structures are discussed. Important influences like microsolvation or aggregation behavior are presented. Beyond the linear α-peptides, the main results of structural analysis on cyclic systems as well as on β- and γ-peptides are summarized. Overall, this contribution addresses current aspects of molecular beam spectroscopy on peptides and related species and provides molecular level insights into manifold issues of chemical and biochemical relevance.

Proton transfer at subkelvin temperatures

We demonstrate a novel method to ionize molecules or molecular clusters by proton transfer at temperatures below 1 K. The method yields nascent ions and largely eliminates secondary reactions, even for notoriously 'delicate' molecules. Protonation is achieved inside liquid helium nanodroplets (HNDs) and begins with the formation of (H2)mH+ ions as the proton donors. In a separate and subsequent step the HNDs are doped with a proton acceptor molecule, X. Proton transfer occurs between X and the cold proton donor ions inside a helium droplet, an approach that avoids the large excess energy that is released if HNDs are first doped and then ionized. Mass spectra, recorded after stripping excess helium and hydrogen in a collision cell, show that this method offers a new way to determine proton affinities of molecules and clusters by proton-transfer bracketing, to investigate astrochemically relevant ion-molecule reactions at sub-kelvin temperatures, and to prepare XH+ ions that are suitable for messenger-tagging action spectroscopy.

Alignment and Imaging of the CS_{2} Dimer Inside Helium Nanodroplets

The carbon disulphide (CS_{2}) dimer is formed inside He nanodroplets and identified using fs laser-induced Coulomb explosion, by observing the CS_{2}^{+} ion recoil velocity. It is then shown that a 160 ps moderately intense laser pulse can align the dimer in advantageous spatial orientations which allow us to determine the cross-shaped structure of the dimer by analysis of the correlations between the emission angles of the nascent CS_{2}^{+} and S^{+} ions, following the explosion process. Our method will enable fs time-resolved structural imaging of weakly bound molecular complexes during conformational isomerization, including formation of exciplexes.

Electrostatic Deflection of a Molecular Beam of Massive Neutral Particles: Fully Field-Oriented Polar Molecules within Superfluid Nanodroplets

Electric deflection measurements on liquid helium nanodroplets doped with individual polar molecules demonstrate that the cold superfluid matrix enables full orientation of the molecular dipole along the external field. This translates into a deflection force that is increased enormously by comparison with typical deflection experiments, and it becomes possible to measurably deflect neutral doped droplets with masses of tens to hundreds of thousands of Daltons. By using continuous fluxes of fully oriented polar molecules and measuring the deflection of the doped nanodroplet beam, this approach makes it possible to directly determine the dipole moments of internally cryogenically cold molecules. The technique is broadly and generally applicable, including to complex and biological molecules.