1
|
Deshmukh SH, Nachaki EO, Kuroda DG. Uncovering the binding nature of thiocyanate in contact ion pairs with lithium ions. J Chem Phys 2024; 161:034507. [PMID: 39017430 DOI: 10.1063/5.0216491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 06/28/2024] [Indexed: 07/18/2024] Open
Abstract
Ion pair formation is a fundamental molecular process that occurs in a wide variety of systems, including electrolytes, biological systems, and materials. In solution, the thiocyanate (SCN-) anion interacts with cations to form contact ion pairs (CIPs). Due to its ambidentate nature, thiocyanate can bind through either its sulfur or nitrogen atoms, depending on the solvent. This study focuses on the binding nature of thiocyanate with lithium ions as a function of the solvents using FTIR, 2D infrared spectroscopy (2DIR) spectroscopies, and theoretical calculations. The study reveals that the SCN- binding mode (S or N end) in CIPs can be identified through 2DIR spectroscopy but not by linear IR spectroscopy. Linear IR spectroscopy shows that the CN stretch frequencies are too close to one another to separate N- and S-bound CIPs. Moreover, the IR spectrum shows that the S-C stretch presents different frequencies for the salt in different solvents, but it is related to the anion speciation rather than to its binding mode. A similar trend is observed for the anion bend. 2DIR spectra show different dynamics for N-bound and S-bound thiocyanate. In particular, the frequency-frequency correlation function (FFCF) dynamics extracted from the 2DIR spectra have a single picosecond exponential decay for N-bound thiocyanate and a biexponential decay for S-bound thiocyanate, consistent with the binding mode of the anion. Finally, it is also observed that the binding mode also affects the line shape parameters, probably due to the different molecular mechanisms of the FFCF for N- and S-bound CIPs.
Collapse
Affiliation(s)
- Samadhan H Deshmukh
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - Ernest O Nachaki
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - Daniel G Kuroda
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| |
Collapse
|
2
|
Mi WJ, Bi WC, Meng MZ, Chen YP, Sun YQ. A Spectroscopic Method for Distinguishing Two Novel Sandwich-Type Tungsten Oxide Cluster Compounds. APPLIED SPECTROSCOPY 2024:37028241254093. [PMID: 38772560 DOI: 10.1177/00037028241254093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2024]
Abstract
This study introduces two novel sandwich-type tungsten-oxygen cluster compounds synthesized by hydrothermal methods, H4(C6H12N2H2)3{Na(H2O)2[Mn2(H2O)(GeW9O34)]}2 (Compound 1) and H2(C6H12N2H2)3.5{Na3(H2O)4[Co2(H2O)(GeW9O34)]2}·17H2O (Compound 2). The two compounds comprise cluster anions [GeW9O34]10- coordinated with transition metal atoms, either Mn or Co, and are stabilized by organic ligands. These compounds are crystallized in the hexagonal crystal system and P63/m space group. The two compounds were characterized through various techniques. Fourier transform infrared (IR) spectroscopy showed absorption peaks of anionic backbone vibrations of the Keggin cluster at 500-1000 cm-1, IR spectral peaks of δ(N-H) and νas(C-N) of the ligand triethylenediamine at 1000-2000 cm-1, and IR spectral peaks of the ligand νas(N-H) and νas(O-H) of water at 3000-3500 cm-1. Despite similar one-dimensional (1D) IR spectra due to the same cluster anions and similar molecular structures, the two compounds exhibited distinct responses in two-dimensional correlation spectroscopy with IR under magnetic and thermal perturbations. Under magnetic perturbation, Compound 1 showed a strong response peak for νas(W-Ob-W), while Compound 2 exhibited a strong response peak for νas(W=Od), possibly linked to differing magnetic particles. Similarly, Compound 1 displayed a strong response peak under thermal perturbation for νas(W-Oc-W). In contrast, Compound 2 showed a strong response peak for νas(W=Od); these results may be attributed to the different hydrogen bonding connections between the two compounds, which affect the groups in distinct ways through vibration and transmit these vibrations to the W-O bonds. The research presented in this paper expands the theoretical and experimental data of 2D correlation IR spectroscopy.
Collapse
Affiliation(s)
- Wen-Jun Mi
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, China
| | - Wen-Chao Bi
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, China
| | - Ming-Ze Meng
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, China
| | - Yi-Ping Chen
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, China
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian, China
| | - Yan-Qiong Sun
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, China
| |
Collapse
|
3
|
Morichika I, Tsusaka H, Ashihara S. Generation of High-Lying Vibrational States in Carbon Dioxide through Coherent Ladder Climbing. J Phys Chem Lett 2024; 15:4662-4668. [PMID: 38647557 PMCID: PMC11073050 DOI: 10.1021/acs.jpclett.4c00646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 04/17/2024] [Accepted: 04/18/2024] [Indexed: 04/25/2024]
Abstract
Mid-infrared laser excitation of molecules into high-lying vibrational states offers a novel route to realize controlled ground-state chemistry. Here we successfully demonstrate vibrational ladder climbing in the antisymmetric stretch of CO2 in the condensed phase by using intense down-chirped mid-infrared pulses. Spectrally resolved pump-probe measurements directly observe excited-state absorptions attributed to vibrational populations up to the v = 9 state, whose corresponding energy of 2.5 eV is 46% of the dissociation energy. By the use of global fitting analysis, important spectroscopic parameters in the high-lying vibrational states, such as transition frequencies and relaxation times, are quantitatively characterized. Remarkably, our analysis shows that 40% of the molecules are excited above the typical activation barriers in the metal-catalyzed CO2 conversions. These results not only demonstrate the promising ability of infrared excitation to produce elevated vibrational states but also represent a significant step toward accelerating CO2 conversions and other chemical processes via mode-specific vibrational excitation.
Collapse
Affiliation(s)
- Ikki Morichika
- Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
| | - Hiroki Tsusaka
- Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
| | - Satoshi Ashihara
- Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
| |
Collapse
|
4
|
Streu K, Hunsberger S, Patel J, Wan X, Daly CA. Development of a universal method for vibrational analysis of the terminal alkyne C≡C stretch. J Chem Phys 2024; 160:074106. [PMID: 38364010 DOI: 10.1063/5.0185580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 01/07/2024] [Indexed: 02/18/2024] Open
Abstract
The terminal alkyne C≡C stretch has a large Raman scattering cross section in the "silent" region for biomolecules. This has led to many Raman tag and probe studies using this moiety to study biomolecular systems. A computational investigation of these systems is vital to aid in the interpretation of these results. In this work, we develop a method for computing terminal alkyne vibrational frequencies and isotropic transition polarizabilities that can easily and accurately be applied to any terminal alkyne molecule. We apply the discrete variable representation method to a localized version of the C≡C stretch normal mode. The errors of (1) vibrational localization to the terminal alkyne moiety, (2) anharmonic normal mode isolation, and (3) discretization of the Born-Oppenheimer potential energy surface are quantified and found to be generally small and cancel each other. This results in a method with low error compared to other anharmonic vibrational methods like second-order vibrational perturbation theory and to experiments. Several density functionals are tested using the method, and TPSS-D3, an inexpensive nonempirical density functional with dispersion corrections, is found to perform surprisingly well. Diffuse basis functions are found to be important for the accuracy of computed frequencies. Finally, the computation of vibrational properties like isotropic transition polarizabilities and the universality of the localized normal mode for terminal alkynes are demonstrated.
Collapse
Affiliation(s)
- Kristina Streu
- Department of Chemistry, Haverford College, 370 Lancaster Ave., Haverford, Pennsylvania 19041, USA
| | - Sara Hunsberger
- Department of Chemistry, Haverford College, 370 Lancaster Ave., Haverford, Pennsylvania 19041, USA
| | - Jeanette Patel
- Department of Chemistry, Haverford College, 370 Lancaster Ave., Haverford, Pennsylvania 19041, USA
| | - Xiang Wan
- Department of Mathematics and Statistics, Loyola University Chicago, 1032 W. Sheridan Rd., Chicago, Illinois 60660, USA
| | - Clyde A Daly
- Department of Chemistry, Haverford College, 370 Lancaster Ave., Haverford, Pennsylvania 19041, USA
| |
Collapse
|
5
|
Feng S, Nutthon Y, Masunaga H, Sasaki S, Selyanchyn R, Fujikawa S, Murata S, Takahara A. Controlling Microstructure-Transport Interplay in Poly(ether- block-amide) Multiblock Copolymer Gas Separation Membranes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023. [PMID: 38016082 DOI: 10.1021/acs.langmuir.3c02516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2023]
Abstract
In this study, we investigated the effect of morphology on the gas-transport properties of a poly(ether-block-amide) (PEBA) multiblock copolymer. We annealed the copolymer samples and varied the annealing temperature to evaluate the influence of changes in the microstructure on the gas transport properties of PEBA. In addition, we used time-resolved attenuated total reflection Fourier transform infrared spectroscopy to evaluate the diffusion coefficient of CO2 in PEBA based on the Fickian model. The effect of the annealing temperature on the microphase-separated structure of the multiblock copolymer is discussed in detail. Furthermore, the gas diffusivity was significantly affected by the purity of the soft domains. The annealed sample demonstrated a 38% increase in CO2 permeability while maintaining a high CO2/N2 permselectivity of approximately 53. The findings of this study provide valuable insight into the design and optimization of PEBA membranes for gas separation applications.
Collapse
Affiliation(s)
- Sinan Feng
- Research Center for Negative Emissions Technologies, Kyushu University, Fukuoka 819-0395, Japan
| | - Yokajaksusri Nutthon
- Research Center for Negative Emissions Technologies, Kyushu University, Fukuoka 819-0395, Japan
| | - Hiroyasu Masunaga
- Japan Synchrotron Radiation Research Institute, Sayo-gun, Hyogo 679-5198, Japan
| | - Sono Sasaki
- Graduate School of Science and Technology and Faculty of Fiber Science and Engineering, Kyoto Institute of Technology, Kyoto 606-8585, Japan
- RIKEN SPring-8 Center, 1-1-1, Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan
| | - Roman Selyanchyn
- Research Center for Negative Emissions Technologies, Kyushu University, Fukuoka 819-0395, Japan
- Platform for Inter-/Transdisciplinary Energy Research, Kyushu University, Fukuoka 819-0395, Japan
- International Institute for Carbon-Neutral Energy Research, Kyushu University, Fukuoka 819-0395, Japan
| | - Shigenori Fujikawa
- Research Center for Negative Emissions Technologies, Kyushu University, Fukuoka 819-0395, Japan
- International Institute for Carbon-Neutral Energy Research, Kyushu University, Fukuoka 819-0395, Japan
| | - Shinichi Murata
- Research Center for Negative Emissions Technologies, Kyushu University, Fukuoka 819-0395, Japan
| | - Atsushi Takahara
- Research Center for Negative Emissions Technologies, Kyushu University, Fukuoka 819-0395, Japan
| |
Collapse
|
6
|
Foreman MM, Stanton JF, Weber JM. Relation Between Bond Angle and Carbon-Oxygen Stretching Frequencies in CO 2-Containing Compounds. J Phys Chem A 2023; 127:9717-9722. [PMID: 37944122 DOI: 10.1021/acs.jpca.3c05082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2023]
Abstract
The symmetric (νs) and antisymmetric (νas) O-C-O stretching modes of CO2-containing compounds encode structural information that can be difficult to decipher, due to the sensitivity of these spectral features to small shifts in charge distribution and structure, as well as the anharmonicities of these two vibrational modes. In this work, we discuss the relation between the frequency of these modes and the geometry of the O-C-O group, showing that the splitting between νs and νas (Δνas-s = νas - νs) can be predicted based only on the O-C-O bond angle obtained from quantum chemical calculations with reasonable accuracy (±46 cm-1, R2 = 0.994). The relationship is shown to hold for the infrared spectra of a variety of CO2-containing molecules measured in vacuo. The origins of this model are discussed in the framework of elementary mode analysis.
Collapse
Affiliation(s)
- Madison M Foreman
- JILA and Department of Chemistry, University of Colorado-Boulder, 440 UCB, Boulder, Colorado 80309-0440, United States
| | - John F Stanton
- Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - J Mathias Weber
- JILA and Department of Chemistry, University of Colorado-Boulder, 440 UCB, Boulder, Colorado 80309-0440, United States
| |
Collapse
|
7
|
Xu C, Baiz CR. Cutting through the Noise: Extracting Dynamics from Ultrafast Spectra Using Dynamic Mode Decomposition. J Phys Chem A 2023; 127:9853-9862. [PMID: 37942956 DOI: 10.1021/acs.jpca.3c05755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
Coherent multidimensional spectroscopy provides experimental access to molecular structure and subpicosecond dynamics in solution. Dynamics are typically inferred from the evolution of lineshapes over a function of waiting time. Numerous spectral analysis methods, such as center/nodal line slope, have been developed to extract these dynamics. However, the extracted dynamics can depend heavily on subjective choices, such as the region selected for CLS analysis or the chosen models. In this study, we introduce a novel approach to extracting dynamics from ultrafast two-dimensional infrared (2D IR) spectra by using dynamic mode decomposition (DMD). As a data-driven method, DMD directly extracts spatiotemporal structures from the complex 2D IR spectra. We evaluated the performance of DMD in simulated and experimental spectra containing overlapped peaks. We show that DMD can retrieve the dynamics of overlapped transitions and cross peaks that are typically challenging to extract with traditional methods. In addition, we demonstrate that combining conditional generative adversarial neural networks with DMD can recover dynamics even at low signal-to-noise ratios. DMD methods do not require preliminary assumptions and can be readily extended to other multidimensional spectroscopies.
Collapse
Affiliation(s)
- Cong Xu
- Department of Chemistry, University of Texas at Austin, 105 East 24th Street, Austin, Texas 78712, United States
| | - Carlos R Baiz
- Department of Chemistry, University of Texas at Austin, 105 East 24th Street, Austin, Texas 78712, United States
| |
Collapse
|
8
|
Tibbetts CA, Wyatt AB, Luther BM, Rappé AK, Krummel AT. Dicyanamide Anion Reports on Water Induced Local Structural and Dynamic Heterogeneity in Ionic Liquid Mixtures. J Phys Chem B 2023; 127:932-943. [PMID: 36655844 DOI: 10.1021/acs.jpcb.2c07060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The effects of limited amounts (under 21.6% χWater) of water on 1-butyl-3-methylimidazolium tetrafluoroborate (BmimBF4) and 1-butyl-3-methylimidazolium dicyanamide (BmimDCA) room-temperature ionic liquid (RTIL) mixtures were characterized by tracking changes in the linear and two-dimensional infrared (2D IR) vibrational features of the dicyanamide anion (DCA). Peak shifts with increasing water suggest the formation of water-associated and nonwater-associated DCA populations. Further results showed clear differences in the dynamic behavior of these different populations of DCA at low (defined here as below 2.5% χWater), mid (defined here as between 2.5% χWater and 9.6% χWater), and high (defined here as between 11.6% χWater and 21.6% χWater) range water concentrations. Vibrational relaxation is accelerated with increasing water content for water-associated populations of DCA, indicating water facilitates population relaxation, possibly through the provision of additional bath modes. Conversely, spectral diffusion of water-associated populations slowed dramatically with increasing water, suggesting that water drives the formation of distinct and noninterchangeable or very slowly interchangeable local solvent environments.
Collapse
Affiliation(s)
- Clara A Tibbetts
- Department of Chemistry, Colorado State University, Fort Collins, Colorado80523-1972, United States
| | - Autumn B Wyatt
- Department of Chemistry, Colorado State University, Fort Collins, Colorado80523-1972, United States
| | - Bradley M Luther
- Department of Chemistry, Colorado State University, Fort Collins, Colorado80523-1972, United States
| | - Anthony K Rappé
- Department of Chemistry, Colorado State University, Fort Collins, Colorado80523-1972, United States
| | - Amber T Krummel
- Department of Chemistry, Colorado State University, Fort Collins, Colorado80523-1972, United States
| |
Collapse
|
9
|
Torkzadeh M, Moosavi M. CO 2 capture using dicationic ionic liquids (DILs): Molecular dynamics and DFT-IR studies on the role of cations. J Chem Phys 2023; 158:024503. [PMID: 36641394 DOI: 10.1063/5.0131507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Dicationic ionic liquids (DILs) have been shown to be useful as an effective solvent for the absorption of CO2. However, compared to monocationic ionic liquids (MILs), they have been less investigated for this application. Previous studies on MIL-CO2 systems have shown that anions play the main role in tuning CO2 capture, but the partial negative charge on the oxygens of CO2 may interact with cation centers and, especially, for DILs with two charge centers, the role of cations can be significant. Therefore, the current work focuses on how cation symmetry and the length of side chains affect interactions and also the dynamical and structural properties of DIL-CO2 systems using molecular dynamics simulation. In addition, the effect of CO2 on the infrared vibrational spectra of isolated ions and ion triplet (DIL molecules) was studied using density functional theory calculations and the observed red and blue shifts have been interpreted. The results indicated that symmetric cation with longer side chains tend to interact more strongly with CO2 molecules. It seems that increasing the length of the side chains causes more bending of the middle chain, and in addition to increasing the free fraction volume, it weakens the interaction between cations and anions, and as a result more interaction between gas and cation. The results of this work may contribute to the rational molecular design of DILs for CO2 capture, DIL-based gas sensors, etc.
Collapse
Affiliation(s)
- Mehrangiz Torkzadeh
- Department of Physical Chemistry, Faculty of Chemistry, University of Isfahan, Isfahan 81746-73441, Iran
| | - Majid Moosavi
- Department of Physical Chemistry, Faculty of Chemistry, University of Isfahan, Isfahan 81746-73441, Iran
| |
Collapse
|
10
|
Gronborg KC, Giles SM, Garrett-Roe S. Rotationally-Resolved Two-Dimensional Infrared Spectroscopy of CO 2(g): Rotational Wavepackets and Angular Momentum Transfer. J Phys Chem Lett 2022; 13:8185-8191. [PMID: 36005741 DOI: 10.1021/acs.jpclett.2c02184] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Angular momentum transfer and wavepacket dynamics of CO2(g) were measured on the picosecond time scale using polarization-resolved two-dimensional infrared (2D-IR) spectroscopy. The dynamics of rotational levels up to Jmax ≈ 50 are observed simultaneously at room temperature. Rotational wavepackets launched by the pump pulses cause oscillations in the intensity of individual peaks and beating patterns in the 2D-IR spectra. The structure of the rotationally resolved 2D-IR spectrum is explained using nonlinear response function theory. Spectral diffusion of the rotationally resolved 2D-IR peaks reveals information about angular momentum transfer. We demonstrate the ability to directly measure inelastic angular momentum dynamics simultaneously across the ∼50 thermally excited rotational levels over several hundred picoseconds.
Collapse
Affiliation(s)
- Kai C Gronborg
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania15260, United States
| | - Sydney M Giles
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania15260, United States
| | - Sean Garrett-Roe
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania15260, United States
| |
Collapse
|
11
|
Matsuno R, Nutthon Y, Miyano A, Ninomiya K, Nishibori M, Kiuchi H, Fujikawa S, Harada Y, Takahara A. Electronic Structure of Carbon Dioxide in Sylgard-184 evaluated by using X-ray Emission Spectroscopy. CHEM LETT 2022. [DOI: 10.1246/cl.220113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Ryosuke Matsuno
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Yokajaksusri Nutthon
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Akira Miyano
- Interdisciplinary Graduate School of Engineering Science, Kyushu University, 6-1 Kasugakoen, Kasuga, Fukuoka 816-8580, Japan
| | - Kakeru Ninomiya
- International Center for Synchrotron Radiation Innovation Smart, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai 980-8577, Japan
| | - Maiko Nishibori
- Interdisciplinary Graduate School of Engineering Science, Kyushu University, 6-1 Kasugakoen, Kasuga, Fukuoka 816-8580, Japan
- International Center for Synchrotron Radiation Innovation Smart, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai 980-8577, Japan
| | - Hisao Kiuchi
- Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan
| | - Shigenori Fujikawa
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
- International Institute for Carbon-Neutral Energy Research (WPI-I2CNER), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Yoshihisa Harada
- Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan
| | - Atsushi Takahara
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| |
Collapse
|
12
|
Biswas A, Mallik BS. Vibrational Spectral Dynamics and Ion-Probe Interactions of the Hydrogen-Bonded Liquids in 1-Ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide. Chem Phys 2022. [DOI: 10.1016/j.chemphys.2022.111519] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
13
|
Gleim J, Lindner J, Voehringer P. Vibrational Relaxation of Carbon Dioxide in Water. J Chem Phys 2022; 156:094505. [DOI: 10.1063/5.0082358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jeannine Gleim
- Rheinische Friedrich-Wilhelms-Universität Bonn Institut für Physikalische und Theoretische Chemie, Germany
| | - Jörg Lindner
- Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn Institut für Physikalische und Theoretische Chemie, Germany
| | - Peter Voehringer
- Institut fuer Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn Institut für Physikalische und Theoretische Chemie, Germany
| |
Collapse
|
14
|
Li L, Sun W, Tong Z, Bo M, Ken Ostrikov K, Huang Y, Sun CQ. Discriminative ionic polarizability of alkali halide solutions: Hydration cells, bond distortion, surface stress, and viscosity. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118062] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
|
15
|
Abstract
Multidimensional optical spectra are measured from the response of a material system to a sequence of laser pulses and have the capacity to elucidate specific molecular interactions and dynamics whose influences are absent or obscured in a conventional linear absorption spectrum. Interpretation of complex spectra is supported by theoretical modeling of the spectroscopic observable, requiring implementation of quantum dynamics for coupled electrons and nuclei. Performing numerically correct quantum dynamics in this context may pose computational challenges, particularly in the condensed phase. Semiclassical methods based on calculating classical trajectories offer a practical alternative. Here I review the recent application of some semiclassical, trajectory-based methods to nonlinear molecular vibrational and electronic spectra. Expected final online publication date for the Annual Review of Physical Chemistry, Volume 73 is April 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
Collapse
Affiliation(s)
- Roger F. Loring
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA
| |
Collapse
|
16
|
Robben KC, Cheatum CM. Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models. J Phys Chem B 2021; 125:12876-12891. [PMID: 34783568 PMCID: PMC8630800 DOI: 10.1021/acs.jpcb.1c08764] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
We report a comprehensive
study of the efficacy of least-squares
fitting of multidimensional spectra to generalized Kubo line-shape
models and introduce a novel least-squares fitting metric, termed
the scale invariant gradient norm (SIGN), that enables a highly reliable
and versatile algorithm. The precision of dephasing parameters is
between 8× and 50× better for nonlinear model fitting compared
to that for the centerline-slope (CLS) method, which effectively increases
data acquisition efficiency by 1–2 orders of magnitude. Whereas
the CLS method requires sequential fitting of both the nonlinear and
linear spectra, our model fitting algorithm only requires nonlinear
spectra but accurately predicts the linear spectrum. We show an experimental
example in which the CLS time constants differ by 60% for independent
measurements of the same system, while the Kubo time constants differ
by only 10% for model fitting. This suggests that model fitting is
a far more robust method of measuring spectral diffusion than the
CLS method, which is more susceptible to structured residual signals
that are not removable by pure solvent subtraction. Statistical analysis
of the CLS method reveals a fundamental oversight in accounting for
the propagation of uncertainty by Kubo time constants in the process
of fitting to the linear absorption spectrum. A standalone desktop
app and source code for the least-squares fitting algorithm are freely
available, with example line-shape models and data. We have written
the MATLAB source code in a generic framework where users may supply
custom line-shape models. Using this application, a standard desktop
fits a 12-parameter generalized Kubo model to a 106 data-point
spectrum in a few minutes.
Collapse
Affiliation(s)
- Kevin C Robben
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242, United States
| | | |
Collapse
|
17
|
Pyles CG, Gretz GM, Spector IC, Massari AM. Ultrafast Dynamics Experienced by Carbon Dioxide Diffusing through Polymer Matrices. J Phys Chem B 2021; 125:8997-9004. [PMID: 34329557 DOI: 10.1021/acs.jpcb.1c04223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Fourier transform infrared, pump-probe polarization anisotropy, and two-dimensional infrared spectroscopies were used to study the steady-state and time-dependent behavior of carbon dioxide dissolved in three different polymer systems. Gas reorientation dynamics in poly(methyl methacrylate), poly(methyl acrylate), and poly(dimethylsiloxane) were sensitive to the nature of chemical interactions between the gas and polymer, as well as whether the polymer was in a glassy or rubbery phase. The homogeneous dynamics experienced by the asymmetric stretching vibration were found to be fastest for rubbery polymers with weak, nonspecific gas-polymer interactions. Spectral diffusion was absent for the carbon dioxide vibrational mode in glassy poly(methyl methacrylate) but was activated for the chemically similar but rubbery poly(methyl acrylate). The vibrational dynamics are shown to have a direct correlation with the diffusivity of carbon dioxide through the polymer matrices.
Collapse
Affiliation(s)
- Cynthia G Pyles
- University of Minnesota-Twin Cities, 207 Pleasant St. SE, Minneapolis, Minnesota 55454, United States
| | - Grace M Gretz
- University of Minnesota-Twin Cities, 207 Pleasant St. SE, Minneapolis, Minnesota 55454, United States
| | - Ivan C Spector
- University of Minnesota-Twin Cities, 207 Pleasant St. SE, Minneapolis, Minnesota 55454, United States
| | - Aaron M Massari
- University of Minnesota-Twin Cities, 207 Pleasant St. SE, Minneapolis, Minnesota 55454, United States
| |
Collapse
|
18
|
Valentine ML, Al-Mualem ZA, Baiz CR. Pump Slice Amplitudes: A Simple and Robust Method for Connecting Two-Dimensional Infrared and Fourier Transform Infrared Spectra. J Phys Chem A 2021; 125:6498-6504. [PMID: 34259508 DOI: 10.1021/acs.jpca.1c04558] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ultrafast two-dimensional infrared (2D IR) spectroscopy and Fourier transform infrared (FTIR) spectroscopy are often performed in tandem, with FTIR typically used to interpret and provide hypotheses for 2D IR experiments. Comparisons between 2D IR and FTIR spectra can also be used to examine the structure and orientation in systems of coupled vibrational chromophores. The most common method for comparing 2D IR and FTIR lineshapes, the diagonal slice method, contains significant artifacts when applied to oscillators with low anharmonicities. Here, we introduce a new technique, the pump slice amplitude (PSA) method, for relating 2D IR lineshapes to FTIR lineshapes and compare PSAs against diagonal slices using theoretical and experimental spectra. We find that PSAs are significantly more similar to FTIR lineshapes than diagonal slices in systems with low anharmonicity.
Collapse
Affiliation(s)
- Mason L Valentine
- Department of Chemistry, University of Texas at Austin, Austin 78712, United States
| | - Ziareena A Al-Mualem
- Department of Chemistry, University of Texas at Austin, Austin 78712, United States
| | - Carlos R Baiz
- Department of Chemistry, University of Texas at Austin, Austin 78712, United States
| |
Collapse
|
19
|
Gaynor JD, Weakly RB, Khalil M. Multimode two-dimensional vibronic spectroscopy. I. Orientational response and polarization-selectivity. J Chem Phys 2021; 154:184201. [PMID: 34241026 DOI: 10.1063/5.0047724] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Two-dimensional Electronic-Vibrational (2D EV) spectroscopy and two-dimensional Vibrational-Electronic (2D VE) spectroscopy are among the newest additions to the coherent multidimensional spectroscopy toolbox, and they are directly sensitive to vibronic couplings. In this first of two papers, the complete orientational response functions are developed for a model system consisting of two coupled anharmonic oscillators and two electronic states in order to simulate polarization-selective 2D EV and 2D VE spectra with arbitrary combinations of linearly polarized electric fields. Here, we propose analytical methods to isolate desired signals within complicated spectra and to extract the relative orientation between vibrational and vibronic dipole moments of the model system using combinations of polarization-selective 2D EV and 2D VE spectral features. Time-dependent peak amplitudes of coherence peaks are also discussed as means for isolating desired signals within the time-domain. This paper serves as a field guide for using polarization-selective 2D EV and 2D VE spectroscopies to map coupled vibronic coordinates on the molecular frame.
Collapse
Affiliation(s)
- James D Gaynor
- Department of Chemistry, University of Washington, P.O. Box 351700, Seattle, Washington 98195, USA
| | - Robert B Weakly
- Department of Chemistry, University of Washington, P.O. Box 351700, Seattle, Washington 98195, USA
| | - Munira Khalil
- Department of Chemistry, University of Washington, P.O. Box 351700, Seattle, Washington 98195, USA
| |
Collapse
|
20
|
Kelsheimer CJ, Garrett-Roe S. Intramolecular Vibrational Energy Relaxation of CO 2 in Cross-Linked Poly(ethylene glycol) Diacrylate-Based Ion Gels. J Phys Chem B 2021; 125:1402-1415. [PMID: 32955891 DOI: 10.1021/acs.jpcb.0c06685] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ultrafast two-dimensional infrared spectroscopy (2D-IR) and Fourier transform infrared spectroscopy (FTIR) were used to measure carbon dioxide (CO2) in 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide ([emim][Tf2N]), cross-linked low-molecular-weight poly(ethylene glycol) diacrylate (PEGDA), and an ion gel composed of a 50 vol % blend of the two. The center frequency of the antisymmetric stretch, ν3, of CO2 shifts monotonically to lower wavenumbers with increasing polymer content, with the largest line width in the ion gel (6 cm-1). Increasing polymer content slows both spectral diffusion and vibrational energy relaxation (VER) rates. An unexpected excited-state absorbance peak appears in the 2D-IR of cross-linked PEGDA due to VER from the antisymmetric stretch into the bending mode, ν2. Thirty-two response functions are necessary to describe the observed features in the 2D-IR spectra. Nonlinear least-squares fitting extracts both spectral diffusion and VER rates. In the ion gel, CO2 exhibits spectral diffusion dynamics that lie between that of the pure compounds. The kinetics of VER reflect both fast excitation and de-excitation of the bending mode, similar to the ionic liquid (IL), and slow overall vibrational population relaxation, similar to the cross-linked polymer. The IL-like and polymer-like dynamics suggest that the CO2 resides at the interface of the two components in the ion gel.
Collapse
Affiliation(s)
- C J Kelsheimer
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
| | - Sean Garrett-Roe
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
| |
Collapse
|
21
|
Interactions of CO2 with the homologous series of СnMIMBF4 ionic liquids studied in situ ATR-FTIR spectroscopy: spectral characteristics, thermodynamic parameters and their correlation. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113694] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
22
|
Teramoto T, Ohoyama H. Evidence of Direct Dissolution of CO 2 into the Ionic Liquid [C 4min] [NTf 2] during Their Initial Interaction. J Phys Chem B 2020; 124:8331-8339. [PMID: 32856912 DOI: 10.1021/acs.jpcb.0c05172] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ionic liquids (ILs) are known for their high ability to capture CO2. However, the mechanism of CO2 solubility into ILs during their initial interaction remains controversial. In this study, we analyzed the initial dissolution of CO2 into an IL 1-butyl-3-methylimidazolium bis-(trifluoromethylsulfonyl)imide ([C4min] [NTf2]) by measuring its solubility using a combination of a molecular beam and a flowing liquid jet sheet beam (FJSB) and the King and Wells method (KW method). The temperature dependence of the initial dissolution probability indicates that the solubility of CO2 in the IL [C4min] [NTf2] increases with increasing temperature. This result is not consistent with what has been reported in an equilibrium state. The initial dissolution probability was well-fitted by the Vogel-Fulcher-Tammann (VFT) equation, which describes the dynamical cage structure in IL systems. We also find that the initial dissolution probability was correlated to the cage lifetime and correlation length. The simple model of CO2 dissolution into an IL with the cage model was implemented to explain the experimental results in this study. Our results indicate that the initial dissolution of CO2 into the IL corresponds to a direct solution and not an uptake process.
Collapse
Affiliation(s)
- Takahiro Teramoto
- Institute for Radiation Sciences, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka 560-0043, Japan
| | - Hiroshi Ohoyama
- Department of Chemistry, Graduate School of Science, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka 560-0043, Japan
| |
Collapse
|
23
|
Baiz CR, Błasiak B, Bredenbeck J, Cho M, Choi JH, Corcelli SA, Dijkstra AG, Feng CJ, Garrett-Roe S, Ge NH, Hanson-Heine MWD, Hirst JD, Jansen TLC, Kwac K, Kubarych KJ, Londergan CH, Maekawa H, Reppert M, Saito S, Roy S, Skinner JL, Stock G, Straub JE, Thielges MC, Tominaga K, Tokmakoff A, Torii H, Wang L, Webb LJ, Zanni MT. Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction. Chem Rev 2020; 120:7152-7218. [PMID: 32598850 PMCID: PMC7710120 DOI: 10.1021/acs.chemrev.9b00813] [Citation(s) in RCA: 173] [Impact Index Per Article: 43.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Vibrational spectroscopy is an essential tool in chemical analyses, biological assays, and studies of functional materials. Over the past decade, various coherent nonlinear vibrational spectroscopic techniques have been developed and enabled researchers to study time-correlations of the fluctuating frequencies that are directly related to solute-solvent dynamics, dynamical changes in molecular conformations and local electrostatic environments, chemical and biochemical reactions, protein structural dynamics and functions, characteristic processes of functional materials, and so on. In order to gain incisive and quantitative information on the local electrostatic environment, molecular conformation, protein structure and interprotein contacts, ligand binding kinetics, and electric and optical properties of functional materials, a variety of vibrational probes have been developed and site-specifically incorporated into molecular, biological, and material systems for time-resolved vibrational spectroscopic investigation. However, still, an all-encompassing theory that describes the vibrational solvatochromism, electrochromism, and dynamic fluctuation of vibrational frequencies has not been completely established mainly due to the intrinsic complexity of intermolecular interactions in condensed phases. In particular, the amount of data obtained from the linear and nonlinear vibrational spectroscopic experiments has been rapidly increasing, but the lack of a quantitative method to interpret these measurements has been one major obstacle in broadening the applications of these methods. Among various theoretical models, one of the most successful approaches is a semiempirical model generally referred to as the vibrational spectroscopic map that is based on a rigorous theory of intermolecular interactions. Recently, genetic algorithm, neural network, and machine learning approaches have been applied to the development of vibrational solvatochromism theory. In this review, we provide comprehensive descriptions of the theoretical foundation and various examples showing its extraordinary successes in the interpretations of experimental observations. In addition, a brief introduction to a newly created repository Web site (http://frequencymap.org) for vibrational spectroscopic maps is presented. We anticipate that a combination of the vibrational frequency map approach and state-of-the-art multidimensional vibrational spectroscopy will be one of the most fruitful ways to study the structure and dynamics of chemical, biological, and functional molecular systems in the future.
Collapse
Affiliation(s)
- Carlos R. Baiz
- Department of Chemistry, University of Texas at Austin, Austin, TX 78712, U.S.A
| | - Bartosz Błasiak
- Department of Physical and Quantum Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Jens Bredenbeck
- Johann Wolfgang Goethe-University, Institute of Biophysics, Max-von-Laue-Str. 1, 60438, Frankfurt am Main, Germany
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Seoul 02841, Republic of Korea
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
| | - Jun-Ho Choi
- Department of Chemistry, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea
| | - Steven A. Corcelli
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, U.S.A
| | - Arend G. Dijkstra
- School of Chemistry and School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, U.K
| | - Chi-Jui Feng
- Department of Chemistry, James Franck Institute and Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, U.S.A
| | - Sean Garrett-Roe
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, U.S.A
| | - Nien-Hui Ge
- Department of Chemistry, University of California at Irvine, Irvine, CA 92697-2025, U.S.A
| | - Magnus W. D. Hanson-Heine
- School of Chemistry, University of Nottingham, Nottingham, University Park, Nottingham, NG7 2RD, U.K
| | - Jonathan D. Hirst
- School of Chemistry, University of Nottingham, Nottingham, University Park, Nottingham, NG7 2RD, U.K
| | - Thomas L. C. Jansen
- University of Groningen, Zernike Institute for Advanced Materials, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Kijeong Kwac
- Center for Molecular Spectroscopy and Dynamics, Seoul 02841, Republic of Korea
| | - Kevin J. Kubarych
- Department of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, U.S.A
| | - Casey H. Londergan
- Department of Chemistry, Haverford College, Haverford, Pennsylvania 19041, U.S.A
| | - Hiroaki Maekawa
- Department of Chemistry, University of California at Irvine, Irvine, CA 92697-2025, U.S.A
| | - Mike Reppert
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | - Shinji Saito
- Department of Theoretical and Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki, 444-8585, Japan
| | - Santanu Roy
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6110, U.S.A
| | - James L. Skinner
- Institute for Molecular Engineering, University of Chicago, Chicago, IL 60637, U.S.A
| | - Gerhard Stock
- Biomolecular Dynamics, Institute of Physics, Albert Ludwigs University, 79104 Freiburg, Germany
| | - John E. Straub
- Department of Chemistry, Boston University, Boston, MA 02215, U.S.A
| | - Megan C. Thielges
- Department of Chemistry, Indiana University, 800 East Kirkwood, Bloomington, Indiana 47405, U.S.A
| | - Keisuke Tominaga
- Molecular Photoscience Research Center, Kobe University, Nada, Kobe 657-0013, Japan
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute and Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, U.S.A
| | - Hajime Torii
- Department of Applied Chemistry and Biochemical Engineering, Faculty of Engineering, and Department of Optoelectronics and Nanostructure Science, Graduate School of Science and Technology, Shizuoka University, 3-5-1 Johoku, Naka-Ku, Hamamatsu 432-8561, Japan
| | - Lu Wang
- Department of Chemistry and Chemical Biology, Institute for Quantitative Biomedicine, Rutgers University, 174 Frelinghuysen Road, Piscataway, NJ 08854, U.S.A
| | - Lauren J. Webb
- Department of Chemistry, The University of Texas at Austin, 105 E. 24th Street, STOP A5300, Austin, Texas 78712, U.S.A
| | - Martin T. Zanni
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706-1396, U.S.A
| |
Collapse
|
24
|
Guchhait B, Tibbetts CA, Tracy KM, Luther BM, Krummel AT. Ultrafast vibrational dynamics of a trigonal planar anionic probe in ionic liquids (ILs): A two-dimensional infrared (2DIR) spectroscopic investigation. J Chem Phys 2020; 152:164501. [PMID: 32357764 DOI: 10.1063/1.5141751] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A major impediment limiting the widespread application of ionic liquids (ILs) is their high shear viscosity. Incorporation of a tricyanomethanide (TCM-) anion in ILs leads to low shear viscosity and improvement of several characteristics suitable for large scale applications. However, properties including interactions of TCM- with the local environment and dynamics of TCM- have not been thoroughly investigated. Herein, we have studied the ultrafast dynamics of TCM- in several imidazolium ILs using linear IR and two-dimensional infrared spectroscopy techniques. The spectral diffusion dynamics of the CN stretching modes of TCM- in all ILs exhibit a nonexponential behavior with a short time component of ∼2 ps and a long time component spanning ∼9 ps to 14 ps. The TCM- vibrational probe reports a significantly faster relaxation of ILs compared to those observed previously using linear vibrational probes, such as thiocyanate and selenocyanate. Our results indicate a rapid relaxation of the local ion-cage structure embedding the vibrational probe in the ILs. The faster relaxation suggests that the lifetime of the local ion-cage structure decreases in the presence of TCM- in the ILs. Linear IR spectroscopic results show that the hydrogen-bonding interaction between TCM- and imidazolium cations in ILs is much weaker. Shorter ion-cage lifetimes together with weaker hydrogen-bonding interactions account for the low shear viscosity of TCM- based ILs compared to commonly used ILs. In addition, this study demonstrates that TCM- can be used as a potential vibrational reporter to study the structure and dynamics of ILs and other molecular systems.
Collapse
Affiliation(s)
- Biswajit Guchhait
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
| | - Clara A Tibbetts
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
| | - Kathryn M Tracy
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
| | - Bradley M Luther
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
| | - Amber T Krummel
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
| |
Collapse
|
25
|
Riera M, Yeh EP, Paesani F. Data-Driven Many-Body Models for Molecular Fluids: CO2/H2O Mixtures as a Case Study. J Chem Theory Comput 2020; 16:2246-2257. [DOI: 10.1021/acs.jctc.9b01175] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Marc Riera
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States
| | - Eric P. Yeh
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States
- Materials Science and Engineering, University of California San Diego, La Jolla, California 92093, United States
- San Diego Supercomputer Center, University of California San Diego, La Jolla, California 92093, United States
| |
Collapse
|
26
|
Schröder C, Lyons A, Rick SW. Polarizable MD simulations of ionic liquids: How does additional charge transfer change the dynamics? Phys Chem Chem Phys 2020; 22:467-477. [DOI: 10.1039/c9cp05478b] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new model for treating charge transfer in ionic liquids is developed and applied to 1-ethyl-3-methylimidazolium tetrafluoroborate. The model allows for us to examine the roles of charge transfer, polarizability, and charge scaling effects on the dynamics of ionic liquids.
Collapse
Affiliation(s)
- Christian Schröder
- University of Vienna
- Faculty of Chemistry
- Department of Computational Biological Chemistry
- A-1090 Vienna
- Austria
| | - Alex Lyons
- University of New Orleans
- Department of Chemistry
- New Orleans
- USA
| | - Steven W. Rick
- University of New Orleans
- Department of Chemistry
- New Orleans
- USA
| |
Collapse
|
27
|
Biswas A, Priyadarsini A, Mallik BS. Dynamics and Spectral Response of Water Molecules around Tetramethylammonium Cation. J Phys Chem B 2019; 123:8753-8766. [DOI: 10.1021/acs.jpcb.9b05466] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Aritri Biswas
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi-502285, Sangareddy, Telangana India
| | - Adyasa Priyadarsini
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi-502285, Sangareddy, Telangana India
| | - Bhabani S. Mallik
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi-502285, Sangareddy, Telangana India
| |
Collapse
|
28
|
Yang X, Peng C, Li L, Bo M, Sun Y, Huang Y, Sun CQ. Multifield-resolved phonon spectrometrics: structured crystals and liquids. PROG SOLID STATE CH 2019. [DOI: 10.1016/j.progsolidstchem.2019.07.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
29
|
Sun CQ, Huang Y, Zhang X. Hydration of Hofmeister ions. Adv Colloid Interface Sci 2019; 268:1-24. [PMID: 30921543 DOI: 10.1016/j.cis.2019.03.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2019] [Revised: 03/04/2019] [Accepted: 03/07/2019] [Indexed: 01/08/2023]
Abstract
Water dissolves salt into ions and then hydrates the ions to form an aqueous solution. Hydration of ions deforms the hydrogen bonding network and triggers the solution with what the pure water never shows such as conductivity, molecular diffusivity, thermal stability, surface stress, solubility, and viscosity, having enormous impact to many branches in biochemistry, chemistry, physics, and energy and environmental industry sectors. However, regulations for the solute-solute-solvent interactions are still open for exploration. From the perspective of the screened ionic polarization and O:H-O bond relaxation, this treatise features the recent progress and a perspective in understanding the hydration dynamics of Hofmeister ions in the typical YI, NaX, ZX2, and NaT salt solutions (Y = Li, Na, K, Rb, Cs; X = F, Cl, Br, I; Z = Mg, Ca, Ba, Sr; T = ClO4, NO3, HSO4, SCN). Phonon spectrometric analysis turned out the f(C) number fraction of bonds transition from the mode of deionized water to the hydrating. The linear f(C) ∝ C form features the invariant hydration volume of small cations that are fully-screened by their hydration H2O dipoles. The nonlinear f(C) ∝ 1 - exp.(-C/C0) form describes that the number insufficiency of the ordered hydrating H2O dipoles partially screens the anions. Molecular anions show stronger yet shorter electric field of dipoles. The screened ionic polarization, inter-solute interaction, and O:H-O bond transition unify the solution conductivity, surface stress, viscosity, and critical energies for phase transition.
Collapse
|
30
|
Daly CA, Allison C, Corcelli SA. Modeling Carbon Dioxide Vibrational Frequencies in Ionic Liquids: IV. Temperature Dependence. J Phys Chem B 2019; 123:3797-3803. [PMID: 30943725 DOI: 10.1021/acs.jpcb.9b01863] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
In previous papers in the series, the vibrational spectroscopy of CO2 in ionic liquids (ILs) was investigated at ambient conditions. Here, we extend these studies to understand the temperature dependence of the structure, dynamics, and thermodynamics of CO2 in the 1-butyl-3-methylimidazolium hexafluorophosphate, [bmim][PF6], IL. Using spectroscopic mapping techniques, the infrared absorption spectrum of the CO2 asymmetric stretch mode is simulated at a number of temperatures, and the results are found to be consistent with similar experimental studies. Structural correlation functions are used to reveal the thermodynamics of complete CO2 solvent cage breakdown. The enthalpy and entropy of activation for solvent cage reorganization are found to be 6.9 and 7.6 (kcal/mol)/K, respectively, and these values are similar to the those for spectral, orientational, and translational diffusion. Caging times for CO2 are calculated, and it is shown that the short time dynamics of CO2 are unaffected by temperature, even though the long-time dynamics are highly sensitive to temperature.
Collapse
Affiliation(s)
- Clyde A Daly
- Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46656 , United States
| | - Cecelia Allison
- Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46656 , United States
| | - Steven A Corcelli
- Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46656 , United States
| |
Collapse
|
31
|
Lambrecht DS. Generalizing energy decomposition analysis to response properties to inform expedited predictive models. COMPUT THEOR CHEM 2019. [DOI: 10.1016/j.comptc.2018.12.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
32
|
Sun CQ. Aqueous charge injection: solvation bonding dynamics, molecular nonbond interactions, and extraordinary solute capabilities. INT REV PHYS CHEM 2018. [DOI: 10.1080/0144235x.2018.1544446] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Chang Q. Sun
- EBEAM, Yangtze Normal University, Chongqing, People's Republic of China
- NOVITAS, EEE, Nanyang Technological University, Singapore, Singapore
| |
Collapse
|
33
|
Brinzer T, Daly CA, Allison C, Garrett-Roe S, Corcelli SA. Modeling Carbon Dioxide Vibrational Frequencies in Ionic Liquids: III. Dynamics and Spectroscopy. J Phys Chem B 2018; 122:8931-8942. [PMID: 30160958 DOI: 10.1021/acs.jpcb.8b05659] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In recent years, interest in carbon capture and sequestration has led to numerous investigations of the ability of ionic liquids to act as recyclable CO2-sorbent materials. Herein, we investigate the structure and dynamics of a model physisorbing ionic liquid, 1-butyl-3-methylimidazolium hexafluorophosphate ([C4C1Im][PF6]), from the perspective of CO2 using two-dimensional (2D) IR spectroscopy and molecular dynamics simulations. A direct comparison of experimentally measured and calculated 2D IR line shapes confirms the validity of the simulations and spectroscopic calculations. Taken together, the simulations and experiments reveal new insights into the interactions of a CO2 solute with the surrounding ionic liquid and how these interactions manifest in the 2D IR spectra. In particular, higher CO2 asymmetric stretch vibrational frequencies are associated with softer, less populated solvent cages and lower frequencies are associated with tighter, more highly populated solvent cages. The CO2 interacts most strongly with the anions, and these interactions persist for more than 1 ns. The second strongest interactions are with the imidazolium cation ring that last 100 ps, and the weakest interactions are with the cation butyl tail that persist for 10 ps. The principal contributors to spectral diffusion of the CO2 asymmetric stretch vibrational frequency due to the dynamical evolution of the solvent are through Lennard-Jones interactions at short times and electrostatics at long times.
Collapse
Affiliation(s)
- Thomas Brinzer
- Department of Chemistry , University of Pittsburgh , 219 Parkman Avenue , Pittsburgh , Pennsylvania 15260 , United States.,Pittsburgh Quantum Institute , University of Pittsburgh , 3943 O'Hara Street , Pittsburgh , Pennsylvania 15260 , United States
| | - Clyde A Daly
- Department of Chemistry and Biochemistry , University of Notre Dame , 251 Nieuwland Science Hall , Notre Dame , Indiana 46656 , United States
| | - Cecelia Allison
- Department of Chemistry and Biochemistry , University of Notre Dame , 251 Nieuwland Science Hall , Notre Dame , Indiana 46656 , United States
| | - Sean Garrett-Roe
- Department of Chemistry , University of Pittsburgh , 219 Parkman Avenue , Pittsburgh , Pennsylvania 15260 , United States.,Pittsburgh Quantum Institute , University of Pittsburgh , 3943 O'Hara Street , Pittsburgh , Pennsylvania 15260 , United States
| | - Steven A Corcelli
- Department of Chemistry and Biochemistry , University of Notre Dame , 251 Nieuwland Science Hall , Notre Dame , Indiana 46656 , United States
| |
Collapse
|
34
|
Affiliation(s)
- Sean C. Edington
- Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
| | - Carlos R. Baiz
- Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
| |
Collapse
|
35
|
Straub S, Brünker P, Lindner J, Vöhringer P. An Iron Complex with a Bent, O-Coordinated CO2
Ligand Discovered by Femtosecond Mid-Infrared Spectroscopy. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800672] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Steffen Straub
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| | - Paul Brünker
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| | - Jörg Lindner
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| | - Peter Vöhringer
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| |
Collapse
|
36
|
Straub S, Brünker P, Lindner J, Vöhringer P. An Iron Complex with a Bent, O-Coordinated CO2
Ligand Discovered by Femtosecond Mid-Infrared Spectroscopy. Angew Chem Int Ed Engl 2018; 57:5000-5005. [DOI: 10.1002/anie.201800672] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Revised: 02/14/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Steffen Straub
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| | - Paul Brünker
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| | - Jörg Lindner
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| | - Peter Vöhringer
- Institut für Physikalische und Theoretische Chemie; Rheinische Friedrich-Wilhelms-Universität; Wegelerstraße 12 53117 Bonn Germany
| |
Collapse
|
37
|
Daly CA, Brinzer T, Allison C, Garrett-Roe S, Corcelli SA. Enthalpic Driving Force for the Selective Absorption of CO 2 by an Ionic Liquid. J Phys Chem Lett 2018; 9:1393-1397. [PMID: 29504771 DOI: 10.1021/acs.jpclett.8b00347] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Molecular dynamics (MD) simulations validated against two-dimensional infrared (2D-IR) measurements of CO2 in an imidazolium-based ionic liquid have revealed new insights into the mechanism of CO2 solvation. The first solvation shell around CO2 has a distinctly quadrupolar structure, with strong negative charge density around the CO2 carbon atom and positive charge density near the CO2 oxygen atoms. When CO2 is modeled without atomic charges (thus removing its strong quadrupole moment), its solvation shell weakens and changes significantly into a structure that is similar to that of N2 in the same liquid. The solvation shell of CO2 evolves more quickly when its quadrupole is removed, and we find evidence that solvent cage dynamics is measured by 2D-IR spectroscopy. We also find that the solvent cage evolution of N2 is similar to that of CO2 with no atomic charges, implying that the weaker quadrupole of N2 is responsible for its higher diffusion and lower absorption in ionic liquids.
Collapse
Affiliation(s)
- Clyde A Daly
- Department of Chemistry and Biochemistry , University of Notre Dame , 251 Nieuwland Science Hall , Notre Dame , Indiana 46656 , United States
| | - Thomas Brinzer
- Department of Chemistry , University of Pittsburgh , 219 Parkman Avenue , Pittsburgh , Pennsylvania 15260 , United States
- Pittsburgh Quantum Institute , University of Pittsburgh , 3943 O'Hara Street , Pittsburgh , Pennsylvania 15260 , United States
| | - Cecelia Allison
- Department of Chemistry and Biochemistry , University of Notre Dame , 251 Nieuwland Science Hall , Notre Dame , Indiana 46656 , United States
| | - Sean Garrett-Roe
- Department of Chemistry , University of Pittsburgh , 219 Parkman Avenue , Pittsburgh , Pennsylvania 15260 , United States
- Pittsburgh Quantum Institute , University of Pittsburgh , 3943 O'Hara Street , Pittsburgh , Pennsylvania 15260 , United States
| | - Steven A Corcelli
- Department of Chemistry and Biochemistry , University of Notre Dame , 251 Nieuwland Science Hall , Notre Dame , Indiana 46656 , United States
| |
Collapse
|
38
|
|
39
|
Ramesh P, Loring RF. Thermal Population Fluctuations in Two-Dimensional Infrared Spectroscopy Captured with Semiclassical Mechanics. J Phys Chem B 2018; 122:3647-3654. [DOI: 10.1021/acs.jpcb.7b12122] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Prashanth Ramesh
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853, United States
| | - Roger F. Loring
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853, United States
| |
Collapse
|
40
|
Sun CQ, Chen J, Gong Y, Zhang X, Huang Y. (H, Li)Br and LiOH Solvation Bonding Dynamics: Molecular Nonbond Interactions and Solute Extraordinary Capabilities. J Phys Chem B 2018; 122:1228-1238. [DOI: 10.1021/acs.jpcb.7b09269] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Chang Q. Sun
- Chongqing
Key Laboratory of Extraordinary Coordination Bond and Advanced Materials
Technologies (EBEAM), Yangtze Normal University, Chongqing 408100, China
- School
EEE, Nanyang Technological University, Singapore 639798
| | - Jiasheng Chen
- Key
Laboratory of Low-Dimensional Materials and Application Technologies
(Ministry of Education) and School of Materials, Science and Engineering, Xiangtan University, Hunan 411105, China
| | - Yinyan Gong
- Institute
of Coordination Bond Metrology and Engineering (CBME), China Jiliang University, Hangzou 310018, China
| | - Xi Zhang
- Institute
of Nanosurface Science and Engineering, Shenzhen University, Shenzhen 518060, China
| | - Yongli Huang
- Key
Laboratory of Low-Dimensional Materials and Application Technologies
(Ministry of Education) and School of Materials, Science and Engineering, Xiangtan University, Hunan 411105, China
| |
Collapse
|
41
|
Oliver TAA. Recent advances in multidimensional ultrafast spectroscopy. ROYAL SOCIETY OPEN SCIENCE 2018; 5:171425. [PMID: 29410844 PMCID: PMC5792921 DOI: 10.1098/rsos.171425] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Accepted: 12/20/2017] [Indexed: 05/14/2023]
Abstract
Multidimensional ultrafast spectroscopies are one of the premier tools to investigate condensed phase dynamics of biological, chemical and functional nanomaterial systems. As they reach maturity, the variety of frequency domains that can be explored has vastly increased, with experimental techniques capable of correlating excitation and emission frequencies from the terahertz through to the ultraviolet. Some of the most recent innovations also include extreme cross-peak spectroscopies that directly correlate the dynamics of electronic and vibrational states. This review article summarizes the key technological advances that have permitted these recent advances, and the insights gained from new multidimensional spectroscopic probes.
Collapse
Affiliation(s)
- Thomas A. A. Oliver
- School of Chemistry, Cantock's Close, University of Bristol, Bristol BS8 1TS, UK
| |
Collapse
|
42
|
Ren Z, Kelly J, Gunathilaka CP, Brinzer T, Dutta S, Johnson CA, Mitra S, Garrett-Roe S. Ultrafast dynamics of ionic liquids in colloidal dispersion. Phys Chem Chem Phys 2017; 19:32526-32535. [PMID: 29188825 DOI: 10.1039/c7cp04441k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ionic liquid (IL)-surfactant complexes have significance both in applications and fundamental research, but their underlying dynamics are not well understood. We apply polarization-controlled two-dimensional infrared spectroscopy (2D-IR) to study the dynamics of [BMIM][SCN]/surfactant/solvent model systems. We examine the effect of the choice of surfactants and solvent, and the IL-to-surfactant ratio (W-value), with a detailed analysis of the orientation and structural dynamics of each system. Different surfactants create very different environments for the entrapped ILs, ranging from a semi-static micro-environment to a fluxional environment that evolves even faster than the bulk IL. The oil-phase also clearly affects the microscopic dynamics. The anisotropy decay for entrapped ILs completes within 10 ps, which is similar to free thiocyanate ion in water, while a significant reorientation-induced spectral diffusion (RISD) effect is observed. The entrapped ionic liquid are highly dynamic for all W-values, and no core-shell structure is observed. We hypothesize that, instead of an ionic liquid-reverse micelle (IL-RM), the microscopic structure of this system is small colloidal dispersions or pairs of IL and surfactants. A detailed analysis of the polarization-controlled 2D-IR spectra of AOT system reveals a potential ion-exchange mechanism.
Collapse
Affiliation(s)
- Zhe Ren
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA 15260, USA.
| | | | | | | | | | | | | | | |
Collapse
|
43
|
Brinzer T, Garrett-Roe S. Temperature and chain length dependence of ultrafast vibrational dynamics of thiocyanate in alkylimidazolium ionic liquids: A random walk on a rugged energy landscape. J Chem Phys 2017; 147:194501. [DOI: 10.1063/1.4991813] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Thomas Brinzer
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Sean Garrett-Roe
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| |
Collapse
|
44
|
Garrett-Roe S. Reorientation-induced spectral diffusion of non-isotropic orientation distributions. J Chem Phys 2017; 147:144504. [DOI: 10.1063/1.4993864] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sean Garrett-Roe
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| |
Collapse
|
45
|
Picosecond orientational dynamics of water in living cells. Nat Commun 2017; 8:904. [PMID: 29026086 PMCID: PMC5714959 DOI: 10.1038/s41467-017-00858-0] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2017] [Accepted: 08/01/2017] [Indexed: 11/18/2022] Open
Abstract
Cells are extremely crowded, and a central question in biology is how this affects the intracellular water. Here, we use ultrafast vibrational spectroscopy and dielectric-relaxation spectroscopy to observe the random orientational motion of water molecules inside living cells of three prototypical organisms: Escherichia coli, Saccharomyces cerevisiae (yeast), and spores of Bacillus subtilis. In all three organisms, most of the intracellular water exhibits the same random orientational motion as neat water (characteristic time constants ~9 and ~2 ps for the first-order and second-order orientational correlation functions), whereas a smaller fraction exhibits slower orientational dynamics. The fraction of slow intracellular water varies between organisms, ranging from ~20% in E. coli to ~45% in B. subtilis spores. Comparison with the water dynamics observed in solutions mimicking the chemical composition of (parts of) the cytosol shows that the slow water is bound mostly to proteins, and to a lesser extent to other biomolecules and ions. The cytoplasm’s crowdedness leads one to expect that cell water is different from bulk water. By measuring the rotational motion of water molecules in living cells, Tros et al. find that apart from a small fraction of water solvating biomolecules, cell water has the same dynamics as bulk water.
Collapse
|
46
|
Brinzer T, Berquist EJ, Ren Z, Dutta S, Johnson CA, Krisher CS, Lambrecht DS, Garrett-Roe S. Erratum: "Ultrafast vibrational spectroscopy (2D-IR) of CO 2 in ionic liquids: Carbon capture from carbon dioxide's point of view" [J. Chem. Phys. 142, 212425 (2015)]. J Chem Phys 2017; 147:049901. [PMID: 28764336 DOI: 10.1063/1.4995447] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Thomas Brinzer
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Eric J Berquist
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Zhe Ren
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Samrat Dutta
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Clinton A Johnson
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Cullen S Krisher
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Daniel S Lambrecht
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| | - Sean Garrett-Roe
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, USA
| |
Collapse
|
47
|
Yamada SA, Bailey HE, Tamimi A, Li C, Fayer MD. Dynamics in a Room-Temperature Ionic Liquid from the Cation Perspective: 2D IR Vibrational Echo Spectroscopy. J Am Chem Soc 2017; 139:2408-2420. [DOI: 10.1021/jacs.6b12011] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Steven A. Yamada
- Department of Chemistry Stanford University, Stanford, California 94305, United States
| | - Heather E. Bailey
- Department of Chemistry Stanford University, Stanford, California 94305, United States
| | - Amr Tamimi
- Department of Chemistry Stanford University, Stanford, California 94305, United States
| | - Chunya Li
- Department of Chemistry Stanford University, Stanford, California 94305, United States
| | - Michael D. Fayer
- Department of Chemistry Stanford University, Stanford, California 94305, United States
| |
Collapse
|
48
|
Majhi D, Sarkar M. Probing the microscopic structural organization of neat ionic liquids (ILs) and ionic liquid-based gels through resonance energy transfer (RET) studies. Phys Chem Chem Phys 2017; 19:23194-23203. [DOI: 10.1039/c7cp04728b] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
With the aim to understand the role of the ionic constituents of ionic liquids (ILs) in their structural organization, resonance energy transfer (RET) studies between ionic liquids (donor) and rhodamine 6G (acceptor) have been investigated.
Collapse
Affiliation(s)
- Debashis Majhi
- School of Chemical Sciences
- National Institute of Science Education and Research
- HBNI
- Bhubaneswar
- India
| | - Moloy Sarkar
- School of Chemical Sciences
- National Institute of Science Education and Research
- HBNI
- Bhubaneswar
- India
| |
Collapse
|
49
|
Berquist EJ, Daly CA, Brinzer T, Bullard KK, Campbell ZM, Corcelli SA, Garrett-Roe S, Lambrecht DS. Modeling Carbon Dioxide Vibrational Frequencies in Ionic Liquids: I. Ab Initio Calculations. J Phys Chem B 2016; 121:208-220. [DOI: 10.1021/acs.jpcb.6b09489] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Eric J. Berquist
- Department
of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
- Pittsburgh Quantum Institute, Pittsburgh, Pennsylvania 15260, United States
| | - Clyde A. Daly
- Department
of Chemistry and Biochemistry, University of Notre Dame, Notre
Dame, Indiana 46556, United States
| | - Thomas Brinzer
- Department
of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
- Pittsburgh Quantum Institute, Pittsburgh, Pennsylvania 15260, United States
| | - Krista K. Bullard
- Department
of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
- Pittsburgh Quantum Institute, Pittsburgh, Pennsylvania 15260, United States
| | - Zachary M. Campbell
- Department
of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
- Pittsburgh Quantum Institute, Pittsburgh, Pennsylvania 15260, United States
| | - Steven A. Corcelli
- Department
of Chemistry and Biochemistry, University of Notre Dame, Notre
Dame, Indiana 46556, United States
| | - Sean Garrett-Roe
- Department
of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
- Pittsburgh Quantum Institute, Pittsburgh, Pennsylvania 15260, United States
| | - Daniel S. Lambrecht
- Department
of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
- Pittsburgh Quantum Institute, Pittsburgh, Pennsylvania 15260, United States
| |
Collapse
|
50
|
Shin JY, Yamada SA, Fayer MD. Dynamics of a Room Temperature Ionic Liquid in Supported Ionic Liquid Membranes vs the Bulk Liquid: 2D IR and Polarized IR Pump–Probe Experiments. J Am Chem Soc 2016; 139:311-323. [DOI: 10.1021/jacs.6b10695] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jae Yoon Shin
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Steven A. Yamada
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Michael D. Fayer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| |
Collapse
|