1
|
Carbery WP, Farfan CA, Ulbricht R, Turner DB. The phonon-modulated Jahn-Teller distortion of the nitrogen vacancy center in diamond. Nat Commun 2024; 15:8646. [PMID: 39368989 PMCID: PMC11455962 DOI: 10.1038/s41467-024-52712-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 09/18/2024] [Indexed: 10/07/2024] Open
Abstract
The negatively charged nitrogen vacancy (NV) center in diamond is an optically accessible material defect with a unique combination of spin and optical properties that has attracted interest in quantum-information sciences and as a design candidate for nanoscale quantum sensors. Here, we present time-resolved nonlinear optical spectroscopy measurements, conducted with ultrabroadband laser pulses, that reveal strong modulation of the excited-state by the longitudinal optical (LO) phonon of the diamond lattice. The LO phonon and its overtones geometrically distort neighboring NV centers, driving long lived (3.5 ps) excited state relaxation of coupled NV centers after the initial excitation and ultrafast (<150 fs) decay of the Jahn-Teller distortion. These observations elevate the LO phonon to an important tuning mode of the Jahn-Teller conical intersection and help resolve previous spectroscopy experiments that noted longer-lived excited-state dynamics.
Collapse
Affiliation(s)
- William P Carbery
- Department of Chemistry, New York University, New York, NY, 10003, USA.
| | - Camille A Farfan
- Department of Chemistry, New York University, New York, NY, 10003, USA
| | - Ronald Ulbricht
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany.
| | - Daniel B Turner
- Department of Chemistry, New York University, New York, NY, 10003, USA.
| |
Collapse
|
2
|
Harel E. Parameter estimation in ultrafast spectroscopy using probability theory. J Chem Phys 2023; 159:124101. [PMID: 38127370 DOI: 10.1063/5.0160631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 09/01/2023] [Indexed: 12/23/2023] Open
Abstract
Ultrafast spectroscopy is a powerful technique that utilizes short pulses on the femtosecond time scale to generate and probe coherent responses in molecular systems. While the specific ultrafast methodologies vary, the most common data analysis tools rely on discrete Fourier transformation for recovering coherences that report on electronic or vibrational states and multi-exponential fitting for probing population dynamics, such as excited-state relaxation. These analysis tools are widely used due to their perceived reliability in estimating frequencies and decay rates. Here, we demonstrate that such "black box" methods for parameter estimation often lead to inaccurate results even in the absence of noise. To address this issue, we propose an alternative approach based on Bayes probability theory that simultaneously accounts for both population and coherence contributions to the signal. This Bayesian inference method offers accurate parameter estimations across a broad range of experimental conditions, including scenarios with high noise and data truncation. In contrast to traditional methods, Bayesian inference incorporates prior information about the measured signal and noise, leading to improved accuracy. Moreover, it provides estimator error bounds, enabling a systematic statistical framework for interpreting confidence in the results. By employing Bayesian inference, all parameters of a realistic model system may be accurately recovered, even in extremely challenging scenarios where Fourier and multi-exponential fitting methods fail. This approach offers a more reliable and comprehensive analysis tool for time-resolved coherent spectroscopy, enhancing our understanding of molecular systems and enabling a better interpretation of experimental data.
Collapse
Affiliation(s)
- Elad Harel
- Department of Chemistry, Michigan State University, 578 South Shaw Lane, East Lansing, Michigan 48864, USA
| |
Collapse
|
3
|
Barclay MS, Chowdhury AU, Biaggne A, Huff JS, Wright ND, Davis PH, Li L, Knowlton WB, Yurke B, Pensack RD, Turner DB. Probing DNA structural heterogeneity by identifying conformational subensembles of a bicovalently bound cyanine dye. J Chem Phys 2023; 158:035101. [PMID: 36681650 DOI: 10.1063/5.0131795] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
DNA is a re-configurable, biological information-storage unit, and much remains to be learned about its heterogeneous structural dynamics. For example, while it is known that molecular dyes templated onto DNA exhibit increased photostability, the mechanism by which the structural dynamics of DNA affect the dye photophysics remains unknown. Here, we use femtosecond, two-dimensional electronic spectroscopy measurements of a cyanine dye, Cy5, to probe local conformations in samples of single-stranded DNA (ssDNA-Cy5), double-stranded DNA (dsDNA-Cy5), and Holliday junction DNA (HJ-DNA-Cy5). A line shape analysis of the 2D spectra reveals a strong excitation-emission correlation present in only the dsDNA-Cy5 complex, which is a signature of inhomogeneous broadening. Molecular dynamics simulations support the conclusion that this inhomogeneous broadening arises from a nearly degenerate conformer found only in the dsDNA-Cy5 complex. These insights will support future studies on DNA's structural heterogeneity.
Collapse
Affiliation(s)
- Matthew S Barclay
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Azhad U Chowdhury
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Austin Biaggne
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Jonathan S Huff
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Nicholas D Wright
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Paul H Davis
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Lan Li
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - William B Knowlton
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Bernard Yurke
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Ryan D Pensack
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| | - Daniel B Turner
- Micron School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, USA
| |
Collapse
|
4
|
Barclay M, Huff JS, Pensack RD, Davis PH, Knowlton WB, Yurke B, Dean JC, Arpin PC, Turner DB. Characterizing Mode Anharmonicity and Huang-Rhys Factors Using Models of Femtosecond Coherence Spectra. J Phys Chem Lett 2022; 13:5413-5423. [PMID: 35679146 PMCID: PMC9234982 DOI: 10.1021/acs.jpclett.1c04162] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 06/06/2022] [Indexed: 06/15/2023]
Abstract
Femtosecond laser pulses readily produce coherent quantum beats in transient-absorption spectra. These oscillatory signals often arise from molecular vibrations and therefore may contain information about the excited-state potential energy surface near the Franck-Condon region. Here, by fitting the measured spectra of two laser dyes to microscopic models of femtosecond coherence spectra (FCS) arising from molecular vibrations, we classify coherent quantum-beat signals as fundamentals or overtones and quantify their Huang-Rhys factors and anharmonicity values. We discuss the extracted Huang-Rhys factors in the context of quantum-chemical computations. This work solidifies the use of FCS for analysis of coherent quantum beats arising from molecular vibrations, which will aid studies of molecular aggregates and photosynthetic proteins.
Collapse
Affiliation(s)
- Matthew
S. Barclay
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Jonathan S. Huff
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Ryan D. Pensack
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Paul H. Davis
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - William B. Knowlton
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
- Department
of Electrical & Computer Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Bernard Yurke
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
- Department
of Electrical & Computer Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Jacob C. Dean
- Department
of Physical Science, Southern Utah University, Cedar City, Utah 84720, United States
| | - Paul C. Arpin
- Department
of Physics, California State University,
Chico, Chico, California 95929, United States
| | - Daniel B. Turner
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| |
Collapse
|
5
|
Biswas S, Kim J, Zhang X, Scholes GD. Coherent Two-Dimensional and Broadband Electronic Spectroscopies. Chem Rev 2022; 122:4257-4321. [PMID: 35037757 DOI: 10.1021/acs.chemrev.1c00623] [Citation(s) in RCA: 44] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Over the past few decades, coherent broadband spectroscopy has been widely used to improve our understanding of ultrafast processes (e.g., photoinduced electron transfer, proton transfer, and proton-coupled electron transfer reactions) at femtosecond resolution. The advances in femtosecond laser technology along with the development of nonlinear multidimensional spectroscopy enabled further insights into ultrafast energy transfer and carrier relaxation processes in complex biological and material systems. New discoveries and interpretations have led to improved design principles for optimizing the photophysical properties of various artificial systems. In this review, we first provide a detailed theoretical framework of both coherent broadband and two-dimensional electronic spectroscopy (2DES). We then discuss a selection of experimental approaches and considerations of 2DES along with best practices for data processing and analysis. Finally, we review several examples where coherent broadband and 2DES were employed to reveal mechanisms of photoinitiated ultrafast processes in molecular, biological, and material systems. We end the review with a brief perspective on the future of the experimental techniques themselves and their potential to answer an even greater range of scientific questions.
Collapse
Affiliation(s)
- Somnath Biswas
- Department of Chemistry, Princeton University, Princeton, New Jersey 08 544, United States
| | - JunWoo Kim
- Department of Chemistry, Princeton University, Princeton, New Jersey 08 544, United States
| | - Xinzi Zhang
- Department of Chemistry, Princeton University, Princeton, New Jersey 08 544, United States
| | - Gregory D Scholes
- Department of Chemistry, Princeton University, Princeton, New Jersey 08 544, United States
| |
Collapse
|
6
|
Kostjukov VV. Photoexcitation of cresyl violet dye in aqueous solution: TD-DFT study. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02853-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
7
|
Mewes L, Ingle RA, Al Haddad A, Chergui M. Broadband visible two-dimensional spectroscopy of molecular dyes. J Chem Phys 2021; 155:034201. [PMID: 34293898 DOI: 10.1063/5.0053554] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Two-dimensional Fourier transform spectroscopy is a promising technique to study ultrafast molecular dynamics. Similar to transient absorption spectroscopy, a more complete picture of the dynamics requires broadband laser pulses to observe transient changes over a large enough bandwidth, exceeding the inhomogeneous width of electronic transitions, as well as the separation between the electronic or vibronic transitions of interest. Here, we present visible broadband 2D spectra of a series of dye molecules and report vibrational coherences with frequencies up to ∼1400 cm-1 that were obtained after improvements to our existing two-dimensional Fourier transform setup [Al Haddad et al., Opt. Lett. 40, 312-315 (2015)]. The experiment uses white light from a hollow core fiber, allowing us to acquire 2D spectra with a bandwidth of 200 nm, in a range between 500 and 800 nm, and with a temporal resolution of 10-15 fs. 2D spectra of nile blue, rhodamine 800, terylene diimide, and pinacyanol iodide show vibronic spectral features with at least one vibrational mode and reveal information about structural motion via coherent oscillations of the 2D signals during the population time. For the case of pinacyanol iodide, these observations are complemented by its Raman spectrum, as well as the calculated Raman activity at the ground- and excited-state geometry.
Collapse
Affiliation(s)
- Lars Mewes
- Laboratoire de Spectroscopie Ultrarapide and LACUS, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB-BSP, CH-1015 Lausanne, Switzerland
| | - Rebecca A Ingle
- Laboratoire de Spectroscopie Ultrarapide and LACUS, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB-BSP, CH-1015 Lausanne, Switzerland
| | - Andre Al Haddad
- Laboratoire de Spectroscopie Ultrarapide and LACUS, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB-BSP, CH-1015 Lausanne, Switzerland
| | - Majed Chergui
- Laboratoire de Spectroscopie Ultrarapide and LACUS, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB-BSP, CH-1015 Lausanne, Switzerland
| |
Collapse
|
8
|
Arpin PC, Turner DB. Signatures of Vibrational and Electronic Quantum Beats in Femtosecond Coherence Spectra. J Phys Chem A 2021; 125:2425-2435. [PMID: 33724844 PMCID: PMC8023717 DOI: 10.1021/acs.jpca.0c10807] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Indexed: 11/29/2022]
Abstract
Femtosecond laser pulses can produce oscillatory signals in transient-absorption spectroscopy measurements. The quantum beats are often studied using femtosecond coherence spectra (FCS), the Fourier domain amplitude, and phase profiles at individual oscillation frequencies. In principle, one can identify the mechanism that gives rise to each quantum-beat signal by comparing its measured FCS to those arising from microscopic models. To date, however, most measured FCS deviate from the ubiquitous harmonic oscillator model. Here, we expand the inventory of models to which the measured spectra can be compared. We develop quantum-mechanical models of the fundamental, overtone, and combination-band FCS arising from harmonic potentials, the FCS of anharmonic potentials, and the FCS of a purely electronic dimer. This work solidifies the use of FCS for identifying electronic coherences that can arise in measurements of molecular aggregates including photosynthetic proteins. Furthermore, future studies can use the derived expressions to fit the measured FCS and thereby extract microscopic parameters of molecular potential-energy surfaces.
Collapse
Affiliation(s)
- Paul C. Arpin
- Department
of Physics, California State University,
Chico, Chico, California 95929, United States
| | - Daniel B. Turner
- Micron
School for Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| |
Collapse
|
9
|
Begušić T, Vaníček J. Finite-Temperature, Anharmonicity, and Duschinsky Effects on the Two-Dimensional Electronic Spectra from Ab Initio Thermo-Field Gaussian Wavepacket Dynamics. J Phys Chem Lett 2021; 12:2997-3005. [PMID: 33733773 PMCID: PMC8006135 DOI: 10.1021/acs.jpclett.1c00123] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 03/08/2021] [Indexed: 05/28/2023]
Abstract
Accurate description of finite-temperature vibrational dynamics is indispensable in the computation of two-dimensional electronic spectra. Such simulations are often based on the density matrix evolution, statistical averaging of initial vibrational states, or approximate classical or semiclassical limits. While many practical approaches exist, they are often of limited accuracy and difficult to interpret. Here, we use the concept of thermo-field dynamics to derive an exact finite-temperature expression that lends itself to an intuitive wavepacket-based interpretation. Furthermore, an efficient method for computing finite-temperature two-dimensional spectra is obtained by combining the exact thermo-field dynamics approach with the thawed Gaussian approximation for the wavepacket dynamics, which is exact for any displaced, distorted, and Duschinsky-rotated harmonic potential but also accounts partially for anharmonicity effects in general potentials. Using this new method, we directly relate a symmetry breaking of the two-dimensional signal to the deviation from the conventional Brownian oscillator picture.
Collapse
|
10
|
Nakamura T. Excitation Energy Transfer Dynamics in a Low-Band-Gap Copolymer: Two-Dimensional Electronic Spectroscopy of PTB7 in Solution. Macromolecules 2020. [DOI: 10.1021/acs.macromol.0c01118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Takumi Nakamura
- Analysis Technology Center, Research and Development Management Headquarters, FUJIFILM Corporation, 210 Nakanuma, Minamiashigara 251-0193, Japan
| |
Collapse
|
11
|
Ng K, Webster M, Carbery WP, Visaveliya N, Gaikwad P, Jang SJ, Kretzschmar I, Eisele DM. Frenkel excitons in heat-stressed supramolecular nanocomposites enabled by tunable cage-like scaffolding. Nat Chem 2020; 12:1157-1164. [PMID: 33199886 DOI: 10.1038/s41557-020-00563-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 09/16/2020] [Indexed: 11/09/2022]
Abstract
Delocalized Frenkel excitons-coherently shared excitations among chromophores-are responsible for the remarkable efficiency of supramolecular light-harvesting assemblies within photosynthetic organisms. The translation of nature's design principles to applications in optoelectronic devices has been limited by the fragility of the supramolecular structures used and the delicate nature of Frenkel excitons, particularly under mildly changing solvent conditions and elevated temperatures and upon deposition onto solid substrates. Here, we overcome those functionalization barriers through composition of stable supramolecular light-harvesting nanotubes enabled by tunable (~4.3-4.9 nm), uniform (±0.3 nm) cage-like scaffolds. High-resolution cryogenic electron microscopy, combined with scanning electron microscopy, broadband femtosecond transient absorption spectroscopy and near-field scanning optical microscopy revealed that excitons within the cage-like scaffolds are robust, even under extreme heat stress, and control over nanocomposite dimensions is maintained on solid substrates. Our bio-inspired nanocomposites provide a general framework for the development of next-generation organic devices made from stable supramolecular materials.
Collapse
Affiliation(s)
- Kara Ng
- PhD Program in Chemistry, Graduate Center, The City University of New York, New York, NY, USA.,Department of Chemistry and Biochemistry, The City College of New York at The City University of New York, New York, NY, USA
| | - Megan Webster
- Department of Chemical Engineering, The City College of New York at The City University of New York, New York, NY, USA
| | - William P Carbery
- Department of Chemistry and Biochemistry, The City College of New York at The City University of New York, New York, NY, USA.,Department of Chemistry, New York University, New York, NY, USA
| | - Nikunjkumar Visaveliya
- Department of Chemistry and Biochemistry, The City College of New York at The City University of New York, New York, NY, USA
| | - Pooja Gaikwad
- PhD Program in Chemistry, Graduate Center, The City University of New York, New York, NY, USA.,Department of Chemistry and Biochemistry, The City College of New York at The City University of New York, New York, NY, USA
| | - Seogjoo J Jang
- Department of Chemistry and Biochemistry, Queens College at The City University of New York, New York, NY, USA
| | - Ilona Kretzschmar
- PhD Program in Chemistry, Graduate Center, The City University of New York, New York, NY, USA.,Department of Chemical Engineering, The City College of New York at The City University of New York, New York, NY, USA
| | - Dorthe M Eisele
- PhD Program in Chemistry, Graduate Center, The City University of New York, New York, NY, USA. .,Department of Chemistry and Biochemistry, The City College of New York at The City University of New York, New York, NY, USA.
| |
Collapse
|
12
|
Kriete B, Bondarenko AS, Alessandri R, Patmanidis I, Krasnikov VV, Jansen TLC, Marrink SJ, Knoester J, Pshenichnikov MS. Molecular versus Excitonic Disorder in Individual Artificial Light-Harvesting Systems. J Am Chem Soc 2020; 142:18073-18085. [PMID: 32985187 PMCID: PMC7582617 DOI: 10.1021/jacs.0c07392] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Indexed: 11/28/2022]
Abstract
Natural light-harvesting antennae employ a dense array of chromophores to optimize energy transport via the formation of delocalized excited states (excitons), which are critically sensitive to spatio-energetic variations of the molecular structure. Identifying the origin and impact of such variations is highly desirable for understanding and predicting functional properties yet hard to achieve due to averaging of many overlapping responses from individual systems. Here, we overcome this problem by measuring the heterogeneity of synthetic analogues of natural antennae-self-assembled molecular nanotubes-by two complementary approaches: single-nanotube photoluminescence spectroscopy and ultrafast 2D correlation. We demonstrate remarkable homogeneity of the nanotube ensemble and reveal that ultrafast (∼50 fs) modulation of the exciton frequencies governs spectral broadening. Using multiscale exciton modeling, we show that the dominance of homogeneous broadening at the exciton level results from exchange narrowing of strong static disorder found for individual molecules within the nanotube. The detailed characterization of static and dynamic disorder at the exciton as well as the molecular level presented here opens new avenues in analyzing and predicting dynamic exciton properties, such as excitation energy transport.
Collapse
Affiliation(s)
- Björn Kriete
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Anna S. Bondarenko
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Riccardo Alessandri
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
- Groningen
Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Ilias Patmanidis
- Groningen
Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Victor V. Krasnikov
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Thomas L. C. Jansen
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Siewert J. Marrink
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
- Groningen
Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Jasper Knoester
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Maxim S. Pshenichnikov
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| |
Collapse
|
13
|
Lu J, Lee Y, Anna JM. Extracting the Frequency-Dependent Dynamic Stokes Shift from Two-Dimensional Electronic Spectra with Prominent Vibrational Coherences. J Phys Chem B 2020; 124:8857-8867. [DOI: 10.1021/acs.jpcb.0c05522] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Jiawei Lu
- University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| | - Yumin Lee
- University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| | - Jessica M. Anna
- University of Pennsylvania, 231 South 34 Street, Philadelphia, Pennsylvania 19104, United States
| |
Collapse
|
14
|
Dostál J, Alster J. Interplay between coherence-time undersampling and scattered light in two-dimensional electronic spectroscopy. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:093103. [PMID: 33003825 DOI: 10.1063/5.0009513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 08/12/2020] [Indexed: 06/11/2023]
Abstract
Scanning pulse delays in multi-pulse non-linear optical spectroscopy experiments is a major contributor to lengthy data acquisition. Using large steps for the scan can significantly speed up the experiment. However, an improper choice of step length can cause distortions to the resulting spectra, especially if the light scattered on the sample is mixed into the signal. In this work, we identify potential sources of such distortions and suggest appropriate countermeasures to avoid them while maintaining a faster data collection.
Collapse
Affiliation(s)
- Jakub Dostál
- Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, 121 16 Prague, Czech Republic
| | - Jan Alster
- Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, 121 16 Prague, Czech Republic
| |
Collapse
|
15
|
Spencer AP, Chen LX. Rapid acquisition of broadband two-dimensional electronic spectra by continuous scanning with conventional delay lines. OPTICS LETTERS 2020; 45:2942-2945. [PMID: 32412506 DOI: 10.1364/ol.391360] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Accepted: 04/24/2020] [Indexed: 06/11/2023]
Abstract
A passively phase-stable, broadband (∼7fs, >2000cm-1) two-dimensional (2D) electronic spectroscopy apparatus that achieves rapid acquisition rates by continuously-rather than step-wise-scanning the Fourier-transform dimension is demonstrated for the first time, to the best of our knowledge. This is made possible through use of a partially common path interferometer design in which the coherence time τ is sampled in a "rotating frame." Rapid, continuous scanning of τ increases the duty cycle of signal collection, rejects the majority of excitation pulse scatter, and enables the measurement of a complete 2D spectrum in 92 ms, which minimizes the influence of pulse intensity and delay fluctuations on the 2D spectrum. In practice, these improvements make possible the acquisition of hundreds of 2D spectra in tens of minutes, which opens the door to dense sampling of ultrafast relaxation dynamics and to generating extremely broadband 3D Fourier-transform spectra.
Collapse
|
16
|
Arsenault EA, Yoneda Y, Iwai M, Niyogi KK, Fleming GR. Vibronic mixing enables ultrafast energy flow in light-harvesting complex II. Nat Commun 2020; 11:1460. [PMID: 32193383 PMCID: PMC7081214 DOI: 10.1038/s41467-020-14970-1] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 02/12/2020] [Indexed: 11/09/2022] Open
Abstract
Since the discovery of quantum beats in the two-dimensional electronic spectra of photosynthetic pigment-protein complexes over a decade ago, the origin and mechanistic function of these beats in photosynthetic light-harvesting has been extensively debated. The current consensus is that these long-lived oscillatory features likely result from electronic-vibrational mixing, however, it remains uncertain if such mixing significantly influences energy transport. Here, we examine the interplay between the electronic and nuclear degrees of freedom (DoF) during the excitation energy transfer (EET) dynamics of light-harvesting complex II (LHCII) with two-dimensional electronic-vibrational spectroscopy. Particularly, we show the involvement of the nuclear DoF during EET through the participation of higher-lying vibronic chlorophyll states and assign observed oscillatory features to specific EET pathways, demonstrating a significant step in mapping evolution from energy to physical space. These frequencies correspond to known vibrational modes of chlorophyll, suggesting that electronic-vibrational mixing facilitates rapid EET over moderately size energy gaps.
Collapse
Affiliation(s)
- Eric A Arsenault
- Department of Chemistry, University of California, Berkeley, CA, 94720, USA
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, CA, 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Yusuke Yoneda
- Department of Chemistry, University of California, Berkeley, CA, 94720, USA
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, CA, 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Masakazu Iwai
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Krishna K Niyogi
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
- Howard Hughes Medical Institute, University of California, Berkeley, CA, 94720, USA
| | - Graham R Fleming
- Department of Chemistry, University of California, Berkeley, CA, 94720, USA.
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, CA, 94720, USA.
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
| |
Collapse
|
17
|
Interference among Multiple Vibronic Modes in Two-Dimensional Electronic Spectroscopy. MATHEMATICS 2020. [DOI: 10.3390/math8020157] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Vibronic coupling between electronic and vibrational states in molecules plays a critical role in most photo-induced phenomena. Many key details about a molecule’s vibronic coupling are hidden in linear spectroscopic measurements, and therefore nonlinear optical spectroscopy methods such as two-dimensional electronic spectroscopy (2D ES) have become more broadly adopted. A single vibrational mode of a molecule leads to a Franck–Condon progression of peaks in a 2D spectrum. Each peak oscillates as a function of the waiting time, and Fourier transformation can produce a spectral slice known as a ‘beating map’ at the oscillation frequency. The single vibrational mode produces a characteristic peak structure in the beating map. Studies of single modes have limited utility, however, because most molecules have numerous vibrational modes that couple to the electronic transition. Interactions or interference among the modes may lead to complicated peak patterns in each beating map. Here, we use lineshape-function theory to simulate 2D ES arising from a system having multiple vibrational modes. The simulations reveal that the peaks in each beating map are affected by all of the vibrational modes and therefore do not isolate a single mode, which was anticipated.
Collapse
|
18
|
Bizimana LA, Epstein J, Turner DB. Inertial water response dominates protein solvation dynamics. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.04.069] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
19
|
Petkov BK, Gellen TA, Farfan CA, Carbery WP, Hetzler BE, Trauner D, Li X, Glover WJ, Ulness DJ, Turner DB. Two-Dimensional Electronic Spectroscopy Reveals the Spectral Dynamics of Förster Resonance Energy Transfer. Chem 2019. [DOI: 10.1016/j.chempr.2019.05.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
|
20
|
Feng Y, Vinogradov I, Ge NH. Optimized noise reduction scheme for heterodyne spectroscopy using array detectors. OPTICS EXPRESS 2019; 27:20323-20346. [PMID: 31510129 DOI: 10.1364/oe.27.020323] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Accepted: 06/09/2019] [Indexed: 06/10/2023]
Abstract
In this work, we optimize and further advance a noise reduction scheme for heterodyne spectroscopy. This scheme linearly combines data from reference detectors to predict the noise statistics in the signal detector through an optimized coefficient matrix. We validate this scheme for visible white-light-continuum and 800-nm light sources using un-matched CMOS arrays and show that the signal-to-noise ratio can approach the noise floor of the signal detector while using only ~5% of the energy for reference detection. We also optimize the strategy for estimating the coefficient matrix in practical applications. When combined with elaborate algorithms to perform pixel data compression and expansion, our scheme is applicable in difficult situations, including when the sample position is rapidly scanned, when detectors exhibit nonlinear response, and/or when laser fluctuations are large. The scheme is generalized to scenarios with complex chopping or phase cycling patterns, and a simple approach is provided for the chopping case. Finally, a robust and computationally efficient method is devised to remove multiplicative noise.
Collapse
|
21
|
Insights into the mechanisms and dynamics of energy transfer in plant light-harvesting complexes from two-dimensional electronic spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2019; 1861:148050. [PMID: 31326408 DOI: 10.1016/j.bbabio.2019.07.005] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 07/01/2019] [Accepted: 07/15/2019] [Indexed: 12/25/2022]
Abstract
During the past two decades, two-dimensional electronic spectroscopy (2DES) and related techniques have emerged as a potent experimental toolset to study the ultrafast elementary steps of photosynthesis. Apart from the highly engaging albeit controversial analysis of the role of quantum coherences in the photosynthetic processes, 2DES has been applied to resolve the dynamics and pathways of energy and electron transport in various light-harvesting antenna systems and reaction centres, providing unsurpassed level of detail. In this paper we discuss the main technical approaches and their applicability for solving specific problems in photosynthesis. We then recount applications of 2DES to study the exciton dynamics in plant and photosynthetic light-harvesting complexes, especially light-harvesting complex II (LHCII) and the fucoxanthin-chlorophyll proteins of diatoms, with emphasis on the types of unique information about such systems that 2DES is capable to deliver. This article is part of a Special Issue entitled Light harvesting, edited by Dr. Roberta Croce.
Collapse
|
22
|
Bizimana LA, Farfan CA, Brazard J, Turner DB. E to Z Photoisomerization of Phytochrome Cph1Δ Exceeds the Born-Oppenheimer Adiabatic Limit. J Phys Chem Lett 2019; 10:3550-3556. [PMID: 31181167 DOI: 10.1021/acs.jpclett.9b01137] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The Born-Oppenheimer adiabatic limit applies broadly in chemistry because most reactions occur on the ground electronic state. Photochemical reactions involve two or more electronic states and need not be subject to this adiabatic limit. The spectroscopic signatures of nonadiabatic processes are subtle, and therefore, experimental investigations have been limited to the few systems dominated by single photochemical outcomes. Systems with branched excited-state pathways have been neglected, despite their potential to reveal insights into photochemical reactivity. Here we present experimental evidence from coherent three-dimensional electronic spectroscopy that the E to Z photoisomerization of phytochrome Cph1 is strongly nonadiabatic, and the simulations reproduce the measured features only when the photoisomerization proceeds nonadiabatically near, but not through, a conical intersection. The results broaden the general understanding of photoisomerization mechanisms and motivate future studies of nonadiabatic processes with multiple outcomes arising from branching on excited-state potential energy surfaces.
Collapse
Affiliation(s)
- Laurie A Bizimana
- Department of Chemistry , New York University , 100 Washington Square East , New York , New York 10003 , United States
| | - Camille A Farfan
- Department of Chemistry , New York University , 100 Washington Square East , New York , New York 10003 , United States
| | - Johanna Brazard
- Department of Chemistry , New York University , 100 Washington Square East , New York , New York 10003 , United States
| | - Daniel B Turner
- Department of Chemistry , New York University , 100 Washington Square East , New York , New York 10003 , United States
| |
Collapse
|
23
|
Carbery WP, Pinto-Pacheco B, Buccella D, Turner DB. Resolving the Fluorescence Quenching Mechanism of an Oxazine Dye Using Ultrabroadband Two-Dimensional Electronic Spectroscopy. J Phys Chem A 2019; 123:5072-5080. [DOI: 10.1021/acs.jpca.9b03632] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- William P. Carbery
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Brismar Pinto-Pacheco
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Daniela Buccella
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Daniel B. Turner
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| |
Collapse
|
24
|
William P. C, Daniel B. T. Characterizing divergent spin-orbit coupling effects on ultrafast nonradiative decay in transition-metal compounds. EPJ WEB OF CONFERENCES 2019. [DOI: 10.1051/epjconf/201920505018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Two-dimensional electronic spectroscopy reveals divergent, spin-orbit coupling mediated, electronic relaxation dynamics in iridium(IV) hexa-bromide ([IrB6]2-) and the ruthenium(II)-based DSSC dye N719.
Collapse
|
25
|
|
26
|
Khosravi SD, Bishop MM, LaFountain AM, Turner DB, Gibson GN, Frank HA, Berrah N. Addition of a Carbonyl End Group Increases the Rate of Excited-State Decay in a Carotenoid via Conjugation Extension and Symmetry Breaking. J Phys Chem B 2018; 122:10872-10879. [PMID: 30387609 DOI: 10.1021/acs.jpcb.8b06732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Steady-state absorption, transient absorption, and transient grating spectroscopies were employed to elucidate the role of a conjugated carbonyl group in the photophysics of carotenoids. Spheroidenone and spheroidene have similar molecular structures and differ only in an additional carbonyl group in spheroidenone. Comparison of the optical responses of these two molecules under similar experimental conditions was used to understand the role of this carbonyl group in the structure. It was found that the carbonyl group has two main effects: first, it dramatically increases the depopulation rate of the excited states of the molecule. The lifetimes of all the excited states of spheroidenone were found to be almost half of the ones for spheroidene. Second, the presence of the carbonyl group in the chain alters the decay mechanism to the symmetry-forbidden S1 state of the molecule, so that the higher vibrational levels of the S1 state are populated much more effectively. It was also revealed that for both molecules, the S2/S x → S1(hot) → S1 decay process is not purely sequential and follows a branched model.
Collapse
Affiliation(s)
| | | | | | - Daniel B Turner
- Department of Chemistry , New York University , New York 10003 , United States
| | | | | | | |
Collapse
|
27
|
Farfan CA, Epstein J, Turner DB. Femtosecond pulse compression using a neural-network algorithm. OPTICS LETTERS 2018; 43:5166-5169. [PMID: 30320846 DOI: 10.1364/ol.43.005166] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 09/25/2018] [Indexed: 06/08/2023]
Abstract
A key requirement for femtosecond spectroscopy measurements is to compress the laser pulse to its transform-limited duration. In particular, for few-cycle laser pulses, the compression process is time-consuming using conventional algorithms that converge statistically. Here we show that machine learning can accelerate the process of pulse compression: we have developed an adaptive neural-network algorithm to control a deformable-mirror-based pulse shaper that converges 100× faster than a standard evolutionary algorithm.
Collapse
|
28
|
Bizimana LA, Carbery WP, Gellen TA, Turner DB. Signatures of Herzberg-Teller coupling in three-dimensional electronic spectroscopy. J Chem Phys 2018; 146:084311. [PMID: 28249416 DOI: 10.1063/1.4976995] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The coupling between electronic and nuclear variables is a key consideration in molecular dynamics and spectroscopy. However, simulations that include detailed vibronic coupling terms are challenging to perform, and thus a variety of approximations can be used to model and interpret experimental results. Recent work shows that these simplified models can be inadequate. It is therefore important to understand spectroscopic signals that can identify failures of those approximations. Here we use an extended response-function method to simulate coherent three-dimensional electronic spectroscopy (3D ES) and study the sensitivity of this method to the breakdown of the Franck-Condon approximation. The simulations include a coordinate-dependent transition dipole operator that produces nodes, phase shifts, and peak patterns in 3D ES that can be used to identify Herzberg-Teller coupling. Guided by the simulation results, we interpret measurements on a molecular aggregate.
Collapse
Affiliation(s)
- Laurie A Bizimana
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| | - William P Carbery
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| | - Tobias A Gellen
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| | - Daniel B Turner
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| |
Collapse
|
29
|
Mueller S, Draeger S, Ma X, Hensen M, Kenneweg T, Pfeiffer W, Brixner T. Fluorescence-Detected Two-Quantum and One-Quantum-Two-Quantum 2D Electronic Spectroscopy. J Phys Chem Lett 2018; 9:1964-1969. [PMID: 29608071 DOI: 10.1021/acs.jpclett.8b00541] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We demonstrate two-quantum (2Q) coherent two-dimensional (2D) electronic spectroscopy using a shot-to-shot-modulated pulse shaper and fluorescence detection. Broadband collinear excitation is realized with the supercontinuum output of an argon-filled hollow-core fiber, enabling us to excite multiple transitions simultaneously in the visible range. The 2Q contribution is extracted via a three-pulse sequence with 16-fold phase cycling and simulated employing cresyl violet as a model system. Furthermore, we report the first experimental realization of one-quantum-two-quantum (1Q-2Q) 2D spectroscopy, offering less congested spectra as compared with the 2Q implementation. We avoid scattering artifacts and nonresonant solvent contributions by using fluorescence as the observable. This allows us to extract quantitative information about doubly excited states that agree with literature expectations. The high sensitivity and background-free nature of fluorescence detection allow for a general applicability of this method to many other systems.
Collapse
Affiliation(s)
- Stefan Mueller
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland , 97074 Würzburg , Germany
| | - Simon Draeger
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland , 97074 Würzburg , Germany
| | - Xiaonan Ma
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland , 97074 Würzburg , Germany
| | - Matthias Hensen
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland , 97074 Würzburg , Germany
| | - Tristan Kenneweg
- Fakultät für Physik , Universität Bielefeld , Universitätsstr. 25 , 33615 Bielefeld , Germany
| | - Walter Pfeiffer
- Fakultät für Physik , Universität Bielefeld , Universitätsstr. 25 , 33615 Bielefeld , Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland , 97074 Würzburg , Germany
- Center for Nanosystems Chemistry (CNC) , Universität Würzburg , Theodor-Boveri-Weg , 97074 Würzburg , Germany
| |
Collapse
|
30
|
Penfold TJ, Gindensperger E, Daniel C, Marian CM. Spin-Vibronic Mechanism for Intersystem Crossing. Chem Rev 2018; 118:6975-7025. [DOI: 10.1021/acs.chemrev.7b00617] [Citation(s) in RCA: 401] [Impact Index Per Article: 66.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Thomas J. Penfold
- Chemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon-Tyne NE1 7RU, United Kingdom
| | - Etienne Gindensperger
- Laboratoire de Chimie Quantique, Institut de Chimie UMR-7177, CNRS - Université de Strasbourg, 1 Rue Blaise Pascal 67008 Strasbourg, France
| | - Chantal Daniel
- Laboratoire de Chimie Quantique, Institut de Chimie UMR-7177, CNRS - Université de Strasbourg, 1 Rue Blaise Pascal 67008 Strasbourg, France
| | - Christel M. Marian
- Institut für Theoretische Chemie, Heinrich-Heine-Universität Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
| |
Collapse
|
31
|
Maiuri M, Brazard J. Electronic Couplings in (Bio-) Chemical Processes. Top Curr Chem (Cham) 2018; 376:10. [DOI: 10.1007/s41061-017-0180-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Accepted: 12/01/2017] [Indexed: 11/24/2022]
|
32
|
Ulness DJ, Turner DB. Coherent Two-Quantum Two-Dimensional Electronic Spectroscopy Using Incoherent Light. J Phys Chem A 2017; 121:9211-9220. [PMID: 29120645 DOI: 10.1021/acs.jpca.7b09443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Two-quantum two-dimensional electronic spectroscopy (2Q 2D ES) may provide a measure of electron-correlation energies in molecules. Attempts to obtain this profound but elusive signal have relied on experimental implementations using femtosecond laser pulses, which induce an overwhelming background signal of nonresonant response. Here we explore theoretically the signatures of electron correlation in coherent 2Q 2D ES measurements that use spectrally incoherent light, I(4) 2Q 2D ES. One can use such fields to suppress nonresonant response, and therefore this method may better isolate the desired signature of electron correlation. Using an appropriate treatment of the multilevel Bloch electronic system, we find that I(4) 2Q 2D ES presents an opportunity to measure electron-correlation energies in molecules.
Collapse
Affiliation(s)
- Darin J Ulness
- Department of Chemistry, Concordia College , Moorhead, Minnesota 56562, United States
| | - Daniel B Turner
- Department of Chemistry, New York University , New York, New York 10003, United States
| |
Collapse
|
33
|
Feng Y, Vinogradov I, Ge NH. General noise suppression scheme with reference detection in heterodyne nonlinear spectroscopy. OPTICS EXPRESS 2017; 25:26262-26279. [PMID: 29041285 DOI: 10.1364/oe.25.026262] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Accepted: 10/03/2017] [Indexed: 06/07/2023]
Abstract
We devised a novel two-step reference scheme that can greatly suppress the additive and convolutional noises in heterodyne nonlinear spectroscopy. To optimally remove additive noise, we fully utilized the spectral correlation in multi-channel reference data through a linear combination and regression algorithm. Using our pump-probe 2D IR spectrometer, we demonstrated that our scheme can improve the signal-to-noise ratio by 10-30 times and reach the noise floor of the signal detector. The new algorithm is guaranteed to reduce noise, enables the use of unmatched reference detectors, and does not introduce baseline shift or signal distortion. This scheme is applicable to many heterodyne spectroscopic techniques.
Collapse
|
34
|
Breen I, Tempelaar R, Bizimana LA, Kloss B, Reichman DR, Turner DB. Triplet Separation Drives Singlet Fission after Femtosecond Correlated Triplet Pair Production in Rubrene. J Am Chem Soc 2017; 139:11745-11751. [PMID: 28763611 DOI: 10.1021/jacs.7b02621] [Citation(s) in RCA: 70] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Singlet fission, a multistep molecular process in which one photon generates two triplet excitons, holds great technological promise. Here, by applying a combination of transient transmittance and two-dimensional electronic spectroscopy with 5 fs laser pulses, we resolve the full set of fission steps before the onset of spin dephasing. In addition to its role as a viable singlet fission material, single-crystalline rubrene is selected because its energetics and transition dipole alignment uniquely allow for the unambiguous identification of the various fission steps through their contributions to distinct spectroscopic features. The measurements reveal that the neighboring correlated triplet pair achieves its maximum population within 20 fs. Subsequent growth of the triplet signal on picosecond time scales is attributable to spatial separation of the triplets, proceeding nonadiabatically through weakly coupled but near-resonant states. As such, we provide evidence in crystalline rubrene for a singlet fission step that, until now, has not been convincingly observed.
Collapse
Affiliation(s)
- Ilana Breen
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Roel Tempelaar
- Department of Chemistry, Columbia University , 3000 Broadway, New York, New York 10027, United States
| | - Laurie A Bizimana
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Benedikt Kloss
- Department of Chemistry, Columbia University , 3000 Broadway, New York, New York 10027, United States
| | - David R Reichman
- Department of Chemistry, Columbia University , 3000 Broadway, New York, New York 10027, United States
| | - Daniel B Turner
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| |
Collapse
|
35
|
Son M, Mosquera-Vázquez S, Schlau-Cohen GS. Ultrabroadband 2D electronic spectroscopy with high-speed, shot-to-shot detection. OPTICS EXPRESS 2017; 25:18950-18962. [PMID: 29041086 DOI: 10.1364/oe.25.018950] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Accepted: 07/21/2017] [Indexed: 06/07/2023]
Abstract
Two-dimensional electronic spectroscopy (2DES) is an incisive tool for disentangling excited state energies and dynamics in the condensed phase by directly mapping out the correlation between excitation and emission frequencies as a function of time. Despite its enhanced frequency resolution, the spectral window of detection is limited to the laser bandwidth, which has often hindered the visualization of full electronic energy relaxation pathways spread over the entire visible region. Here, we describe a high-sensitivity, ultrabroadband 2DES apparatus. We report a new combination of a simple and robust setup for increased spectral bandwidth and shot-to-shot detection. We utilize 8-fs supercontinuum pulses generated by gas filamentation spanning the entire visible region (450 - 800 nm), which allows for a simultaneous interrogation of electronic transitions over a 200-nm bandwidth, and an all-reflective interferometric delay system with angled nanopositioner stages achieves interferometric precision in coherence time control without introducing wavelength-dependent dispersion to the ultrabroadband spectrum. To address deterioration of detection sensitivity due to the inherent instability of ultrabroadband sources, we introduce a 5-kHz shot-to-shot, dual chopping acquisition scheme by combining a high-speed line-scan camera and two optical choppers to remove scatter contributions from the signal. Comparison of 2D spectra acquired by shot-to-shot detection and averaged detection shows a 15-fold improvement in the signal-to-noise ratio. This is the first direct quantification of detection sensitivity on a filamentation-based ultrabroadband 2DES apparatus.
Collapse
|
36
|
Gellen TA, Lem J, Turner DB. Probing Homogeneous Line Broadening in CdSe Nanocrystals Using Multidimensional Electronic Spectroscopy. NANO LETTERS 2017; 17:2809-2815. [PMID: 28422505 DOI: 10.1021/acs.nanolett.6b05068] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The finite spectral line width of an ensemble of CdSe nanocrystals arises from size and shape inhomogeneity and the single-nanocrystal spectrum itself. This line width directly limits the performance of nanocrystal-based devices, yet most optical measurements cannot resolve the underlying contributions. We use two-dimensional electronic spectroscopy (2D ES) to measure the line width of the band-edge exciton of CdSe nanocrystals as a function of radii and surface chemistry. We find that the homogeneous width decreases for increasing nanocrystal radius and that surface chemistry plays a critical role in controlling this line width. To explore the hypothesis that unpassivated trap states serve to broaden the homogeneous line width and to explain its size-dependence, we use 3D ES to identify the spectral signatures of exciton-phonon coupling to optical and acoustic phonons. We find enhanced coupling to optical phonon modes for nanocrystals that lack electron-passivating ligands, suggesting that localized surface charges enhance exciton-phonon coupling via the Fröhlich interaction. Lastly, the data reveal that spectral diffusion contributes negligibly to the homogeneous line width on subnanosecond time scales.
Collapse
Affiliation(s)
- Tobias A Gellen
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Jet Lem
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Daniel B Turner
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| |
Collapse
|
37
|
Johnson PJM, Farag MH, Halpin A, Morizumi T, Prokhorenko VI, Knoester J, Jansen TLC, Ernst OP, Miller RJD. The Primary Photochemistry of Vision Occurs at the Molecular Speed Limit. J Phys Chem B 2017; 121:4040-4047. [PMID: 28358485 DOI: 10.1021/acs.jpcb.7b02329] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ultrafast photochemical reactions are initiated by vibronic transitions from the reactant ground state to the excited potential energy surface, directly populating excited-state vibrational modes. The primary photochemical reaction of vision, the isomerization of retinal in the protein rhodopsin, is known to be a vibrationally coherent reaction, but the Franck-Condon factors responsible for initiating the process have been difficult to resolve with conventional time-resolved spectroscopies. Here we employ experimental and theoretical 2D photon echo spectroscopy to directly resolve for the first time the Franck-Condon factors that initiate isomerization on the excited potential energy surface and track the reaction dynamics. The spectral dynamics reveal vibrationally coherent isomerization occurring on the fastest possible time scale, that of a single period of the local torsional reaction coordinate. We successfully model this process as coherent wavepacket motion through a conical intersection on a ∼30 fs time scale, confirming the reaction coordinate as a local torsional coordinate with a frequency of ∼570 cm-1. As a result of spectral features being spread out along two frequency coordinates, we unambiguously assign reactant and product states following passage through the conical intersection, which reveal the key vibronic transitions that initiate the vibrationally coherent photochemistry of vision.
Collapse
Affiliation(s)
- Philip J M Johnson
- Departments of Chemistry & Physics, University of Toronto , 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Marwa H Farag
- Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands.,Max Planck Institute for the Structure and Dynamics of Matter , Atomically Resolved Dynamics Division, Luruper Chaussee 149, Hamburg 22761, Germany
| | - Alexei Halpin
- Departments of Chemistry & Physics, University of Toronto , 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Takefumi Morizumi
- Department of Biochemistry, University of Toronto , 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada
| | - Valentyn I Prokhorenko
- Max Planck Institute for the Structure and Dynamics of Matter , Atomically Resolved Dynamics Division, Luruper Chaussee 149, Hamburg 22761, Germany
| | - Jasper Knoester
- Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Thomas L C Jansen
- Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Oliver P Ernst
- Department of Biochemistry, University of Toronto , 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada.,Department of Molecular Genetics, University of Toronto , 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada
| | - R J Dwayne Miller
- Departments of Chemistry & Physics, University of Toronto , 80 St. George Street, Toronto, Ontario M5S 3H6, Canada.,Max Planck Institute for the Structure and Dynamics of Matter , Atomically Resolved Dynamics Division, Luruper Chaussee 149, Hamburg 22761, Germany
| |
Collapse
|
38
|
Bizimana LA, Epstein J, Brazard J, Turner DB. Conformational Homogeneity in the P r Isomer of Phytochrome Cph1. J Phys Chem B 2017; 121:2622-2630. [PMID: 28282147 DOI: 10.1021/acs.jpcb.7b02180] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Numerous time-resolved studies of the Pr to Pfr photoisomerization in phytochrome Cph1 have revealed multiphasic excited-state decay kinetics. It remains unclear whether these kinetics arise from multiple ground-state conformational subpopulations or from a single ground-state conformation that undergoes an excited-state photoisomerization process-either branching on the excited state or relaxing through multiple sequential intermediates. Many studies have attempted to resolve this debate by fitting the measured dynamics to proposed kinetic models, arriving at different conclusions. Here we probe spectral signatures of ground-state heterogeneity of Pr. Two-dimensional electronic spectra display negligible inhomogeneous line broadening, and vibrational coherence spectra extracted from transient absorption measurements do not contain nodes and phase shifts at the fluorescence maximum. These spectroscopic results support the homogeneous model, in which the primary photochemical transformation of Pr to Lumi-R occurs adiabatically on the excited-state potential energy surface.
Collapse
Affiliation(s)
- Laurie A Bizimana
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Jordan Epstein
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Johanna Brazard
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Daniel B Turner
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| |
Collapse
|
39
|
Carbery WP, Verma A, Turner DB. Spin-Orbit Coupling Drives Femtosecond Nonadiabatic Dynamics in a Transition Metal Compound. J Phys Chem Lett 2017; 8:1315-1322. [PMID: 28266859 DOI: 10.1021/acs.jpclett.7b00130] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Transient absorption measurements conducted using broadband, 6 fs laser pulses reveal unexpected femtosecond dynamics in the [IrBr6]2- model system. Vibrational spectra and the X-ray crystal structure indicate that these dynamics are not induced by a Jahn-Teller distortion, a type of conical intersection typically associated with the spectral features of transition metal compounds. Two-dimensional electronic spectra of [IrBr6]2- contain 23 cross peaks, which necessarily arise from spin-orbit coupling. Real-valued 2D spectra support a spectroscopic basis where strong nonadiabatic coupling, ascribed to multiple conical intersections, mediates rapid energy relaxation to the lowest-energy excited state. Subsequent analysis gives rise to a more generalized description of a conical intersection as a degeneracy between two adiabatic states having the same total angular momentum.
Collapse
Affiliation(s)
- William P Carbery
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Archana Verma
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Daniel B Turner
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| |
Collapse
|
40
|
Roeding S, Klimovich N, Brixner T. Optimizing sparse sampling for 2D electronic spectroscopy. J Chem Phys 2017; 146:084201. [DOI: 10.1063/1.4976309] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Affiliation(s)
- Sebastian Roeding
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Nikita Klimovich
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| |
Collapse
|
41
|
Draeger S, Roeding S, Brixner T. Rapid-scan coherent 2D fluorescence spectroscopy. OPTICS EXPRESS 2017; 25:3259-3267. [PMID: 28241542 DOI: 10.1364/oe.25.003259] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
We developed pulse-shaper-assisted coherent two-dimensional (2D) electronic spectroscopy in liquids using fluorescence detection. A customized pulse shaper facilitates shot-to-shot modulation at 1 kHz and is employed for rapid scanning over all time delays. A full 2D spectrum with 15 × 15 pixels is obtained in approximately 6 s of measurement time (plus further averaging if needed). Coherent information is extracted from the incoherent fluorescence signal via 27-step phase cycling. We exemplify the technique on cresyl violet in ethanol and recover literature-known oscillations as a function of population time. Signal-to-noise behavior is analyzed as a function of the amount of averaging. Rapid scanning provides a 2D spectrum with a root-mean-square error of < 0.05 after 1 min of measurement time.
Collapse
|
42
|
Ma X, Dostál J, Brixner T. Broadband 7-fs diffractive-optic-based 2D electronic spectroscopy using hollow-core fiber compression. OPTICS EXPRESS 2016; 24:20781-91. [PMID: 27607681 DOI: 10.1364/oe.24.020781] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We demonstrate noncollinear coherent two-dimensional (2D) electronic spectroscopy for which broadband pulses are generated in an argon-filled hollow-core fiber pumped by a 1-kHz Ti:Sapphire laser. Compression is achieved to 7 fs duration (TG-FROG) using dispersive mirrors. The hollow fiber provides a clean spatial profile and smooth spectral shape in the 500-700 nm region. The diffractive-optic-based design of the 2D spectrometer avoids directional filtering distortions and temporal broadening from time smearing. For demonstration we record data of cresyl-violet perchlorate in ethanol and use phasing to obtain broadband absorptive 2D spectra. The resulting quantum beating as a function of population time is consistent with literature data.
Collapse
|
43
|
Gellen TA, Bizimana LA, Carbery WP, Breen I, Turner DB. Ultrabroadband two-quantum two-dimensional electronic spectroscopy. J Chem Phys 2016. [DOI: 10.1063/1.4960302] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tobias A. Gellen
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| | - Laurie A. Bizimana
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| | - William P. Carbery
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| | - Ilana Breen
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| | - Daniel B. Turner
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, USA
| |
Collapse
|
44
|
Cina JA, Kovac PA, Jumper CC, Dean JC, Scholes GD. Ultrafast transient absorption revisited: Phase-flips, spectral fingers, and other dynamical features. J Chem Phys 2016; 144:175102. [DOI: 10.1063/1.4947568] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jeffrey A. Cina
- Department of Chemistry and Biochemistry, and Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, Eugene, Oregon 97403, USA
| | - Philip A. Kovac
- Department of Chemistry and Biochemistry, and Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, Eugene, Oregon 97403, USA
| | - Chanelle C. Jumper
- Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | - Jacob C. Dean
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| | - Gregory D. Scholes
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| |
Collapse
|
45
|
Brazard J, Bizimana LA, Gellen T, Carbery WP, Turner DB. Experimental Detection of Branching at a Conical Intersection in a Highly Fluorescent Molecule. J Phys Chem Lett 2016; 7:14-9. [PMID: 26647278 DOI: 10.1021/acs.jpclett.5b02476] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Conical intersections are molecular configurations at which adiabatic potential-energy surfaces touch. They are predicted to be ubiquitous, yet condensed-phase experiments have focused on the few systems with clear spectroscopic signatures of negligible fluorescence, high photoactivity, or femtosecond electronic kinetics. Although rare, these signatures have become diagnostic for conical intersections. Here we detect a coherent surface-crossing event nearly two picoseconds after optical excitation in a highly fluorescent molecule that has no photoactivity and nanosecond electronic kinetics. Time-frequency analysis of high-sensitivity measurements acquired using sub-8 fs pulses reveals phase shifts of the signal due to branching of the wavepacket through a conical intersection. The time-frequency analysis methodology demonstrated here on a model compound will enable studies of conical intersections in molecules that do not exhibit their diagnostic signatures. Improving the ability to detect conical intersections will enrich the understanding of their mechanistic role in molecular photochemistry.
Collapse
Affiliation(s)
- Johanna Brazard
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Laurie A Bizimana
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Tobias Gellen
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - William P Carbery
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| | - Daniel B Turner
- Department of Chemistry, New York University , 100 Washington Square East, New York, New York 10003, United States
| |
Collapse
|