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Sen S, Mandal S, Sen A, Gopal R, Ben Ltaief L, Turchini S, Catone D, Zema N, Coreno M, Richter R, Mudrich M, Krishnan SR, Sharma V. Fragmentation dynamics of doubly charged camphor molecule following C 1s Auger decay. Phys Chem Chem Phys 2022; 24:2944-2957. [PMID: 35076648 DOI: 10.1039/d1cp05176h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The fragmentation dynamics of the gas-phase, doubly charged camphor molecule, formed by Auger decay following carbon 1s ionisation, using soft X-ray synchrotron radiation, is presented in this work. The technique of velocity map imaging combined with a photoelectron-photoion-photoion coincidence (VMI-PEPIPICO) is used for both electron energy and ion momentum (in-sequence) measurements. The experimental study is complemented by molecular dynamics simulation, performed with an NVT (moles, volume, and temperature) ensemble. Velocity Verlet algorithms were used for time integration at various internal energies. These simulations validate observed dissociation pathways. From these, we successfully deduce that the internal energy of the doubly charged molecular ion has a significant contribution to the fragmentation mechanism. Notably, a prominent signature of the internal energy was observed in the experimentally determined energies of the neutral fragment in these deferred charge separation pathways, entailing a more detailed theoretical study to uncover the exact dissociation dynamics.
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Affiliation(s)
- Sanket Sen
- Indian Institute of Technology Hyderabad, Kandi 502285, India.
| | - S Mandal
- Indian Institute of Science Education and Research, Pune 411008, India
| | - Arnab Sen
- Indian Institute of Science Education and Research, Pune 411008, India
| | - R Gopal
- Tata Institute of Fundamental Research, Hyderabad 500046, India
| | | | - S Turchini
- Istituto di Struttura della Materia - CNR (ISM-CNR), Area di Ricerca di Tor Vergata via del Fosso del Cavaliere, 100, Rome 00133, Italy
| | - D Catone
- Istituto di Struttura della Materia - CNR (ISM-CNR), Area di Ricerca di Tor Vergata via del Fosso del Cavaliere, 100, Rome 00133, Italy
| | - N Zema
- Istituto di Struttura della Materia - CNR (ISM-CNR), Area di Ricerca di Tor Vergata via del Fosso del Cavaliere, 100, Rome 00133, Italy
| | - M Coreno
- Elettra-Sincrotrone Trieste, Basovizza 34149, Italy.,Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, Trieste 34149, Italy
| | - R Richter
- Elettra-Sincrotrone Trieste, Basovizza 34149, Italy
| | - M Mudrich
- Aarhus University, 8000 Aarhus C, Denmark.,QuCenDiEM - group and Department of Physics, Indian Institute of Technology - Madras, Chennai 600036, India.
| | - S R Krishnan
- QuCenDiEM - group and Department of Physics, Indian Institute of Technology - Madras, Chennai 600036, India.
| | - V Sharma
- Indian Institute of Technology Hyderabad, Kandi 502285, India.
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2
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Wallner M, Eland JHD, Squibb RJ, Andersson J, Roos AH, Singh R, Talaee O, Koulentianos D, Piancastelli MN, Simon M, Feifel R. Coulomb explosion of CD 3I induced by single photon deep inner-shell ionisation. Sci Rep 2020; 10:1246. [PMID: 31988321 PMCID: PMC6985119 DOI: 10.1038/s41598-020-58251-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 01/13/2020] [Indexed: 12/05/2022] Open
Abstract
L-shell ionisation and subsequent Coulomb explosion of fully deuterated methyl iodide, CD3I, irradiated with hard X-rays has been examined by a time-of-flight multi-ion coincidence technique. The core vacancies relax efficiently by Auger cascades, leading to charge states up to 16+. The dynamics of the Coulomb explosion process are investigated by calculating the ions’ flight times numerically based on a geometric model of the experimental apparatus, for comparison with the experimental data. A parametric model of the explosion, previously introduced for multi-photon induced Coulomb explosion, is applied in numerical simulations, giving good agreement with the experimental results for medium charge states. Deviations for higher charges suggest the need to include nuclear motion in a putatively more complete model. Detection efficiency corrections from the simulations are used to determine the true distributions of molecular charge states produced by initial L1, L2 and L3 ionisation.
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Affiliation(s)
- M Wallner
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden
| | - J H D Eland
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden.,Department of Chemistry, Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, United Kingdom
| | - R J Squibb
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden
| | - J Andersson
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden
| | - A Hult Roos
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden
| | - R Singh
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden
| | - O Talaee
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden.,Nano and Molecular Systems Research Unit, University of Oulu, P.O. Box 3000, FI-90014, Oulu, Finland
| | - D Koulentianos
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden.,Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, F-75005, Paris, Cedex 05, France
| | - M N Piancastelli
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, F-75005, Paris, Cedex 05, France.,Department of Physics and Astronomy, Uppsala University, Box 516, SE-751 20, Uppsala, Sweden
| | - M Simon
- Sorbonne Université, CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, F-75005, Paris, Cedex 05, France.,Synchrotron SOLEIL, L'Orme des Merisiers, Saint-Aubin, BP 48, F-91192, Gif-sur-Yvette, Cedex, France
| | - R Feifel
- Department of Physics, University of Gothenburg, Origovägen 6B, 412 58, Gothenburg, Sweden.
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3
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Fatayer S, Moll N, Collazos S, Pérez D, Guitián E, Peña D, Gross L, Meyer G. Controlled Fragmentation of Single Molecules with Atomic Force Microscopy by Employing Doubly Charged States. PHYSICAL REVIEW LETTERS 2018; 121:226101. [PMID: 30547655 DOI: 10.1103/physrevlett.121.226101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Indexed: 06/09/2023]
Abstract
By atom manipulation we performed on-surface chemical reactions of a single molecule on a multilayer insulating film using noncontact atomic force microscopy. The single-electron sensitivity of atomic force microscopy allows us to follow the addition of single electrons to the molecule and the investigation of the reaction products. By performing a novel strategy based on long-lived doubly charged states a single molecule is fragmented. The fragmentation can be reverted by again changing the charge state of the system, characterizing a reversible reaction. The experimental results in addition to density-functional theory provide insight into the charge states of the different products and reaction pathways. Similar molecular systems could be used as charge-transfer units and to induce reversible chemical reactions.
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Affiliation(s)
- Shadi Fatayer
- IBM Research-Zurich, Säumerstrasse 4, 8803 Rüschlikon, Switzerland
| | - Nikolaj Moll
- IBM Research-Zurich, Säumerstrasse 4, 8803 Rüschlikon, Switzerland
| | - Sara Collazos
- Centro de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, Santiago de Compostela 15782, Spain
| | - Dolores Pérez
- Centro de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, Santiago de Compostela 15782, Spain
| | - Enrique Guitián
- Centro de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, Santiago de Compostela 15782, Spain
| | - Diego Peña
- Centro de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, Santiago de Compostela 15782, Spain
| | - Leo Gross
- IBM Research-Zurich, Säumerstrasse 4, 8803 Rüschlikon, Switzerland
| | - Gerhard Meyer
- IBM Research-Zurich, Säumerstrasse 4, 8803 Rüschlikon, Switzerland
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