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Skarmoutsos I, Mancera RL, Mossa S, Samios J. Local intermolecular structure, hydrogen bonding and related dynamics in the liquid cis/trans N-methylformamide mixture: A density functional theory based Born-Oppenheimer molecular dynamics study. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Mizuno Y, Zhao Y, Akiba H, Kohara S, Ohara K, Tucker MG, McDonnell MT, Yamamuro O. Intermolecular correlations of liquid and glassy CS2 studied by synchrotron radiation x-ray diffraction. J Chem Phys 2022; 156:034503. [DOI: 10.1063/5.0073210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yuki Mizuno
- Neutron Science Laboratory, Institute for Solid State Physics, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
- Japan Synchrotron Radiation Research Institute (JASRI), 1-1-1, Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
| | - Yuansheng Zhao
- Neutron Science Laboratory, Institute for Solid State Physics, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
| | - Hiroshi Akiba
- Neutron Science Laboratory, Institute for Solid State Physics, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
| | - Shinji Kohara
- National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
| | - Koji Ohara
- Japan Synchrotron Radiation Research Institute (JASRI), 1-1-1, Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
| | - Matthew G. Tucker
- Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, Tennessee 37830, USA
| | - Marshall T. McDonnell
- Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, Tennessee 37830, USA
| | - Osamu Yamamuro
- Neutron Science Laboratory, Institute for Solid State Physics, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
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Skarmoutsos I, Guardia E. Solvation structure and dynamics of the dimethylammonium cation diluted in liquid water: A molecular dynamics approach. J Chem Phys 2020; 152:234501. [PMID: 32571039 DOI: 10.1063/5.0004204] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Classical molecular dynamics simulation techniques were employed to investigate the local solvation structure and related dynamics of the dimethylammonium cation diluted in liquid water at ambient conditions. The translational and orientational order around the dimethylammonium cation was investigated in terms of the corresponding radial and angular distribution functions. The results obtained revealed that the first solvation shell of the dimethylammonium consists mainly of two and, less frequently, three water molecules. The two nearest water neighbors form hydrogen bonds with the ammonium hydrogen atoms of the cation, whereas the third neighbor interacts with the methyl hydrogen atoms as well. The distribution of the trigonal order parameter exhibits a bimodal behavior, signifying the existence of local orientational heterogeneities in the solvation shell of the dimethylammonium cation. The calculated continuous and intermittent residence and hydrogen bond lifetimes for the cation-water pairs have also been found to be longer in comparison with the water-water ones. The very similar self-diffusion coefficients of the dimethylammonium cation and the water molecules in the bulk dilute solution indicate that the translational motions of the cation are mainly controlled by the translational mobility of the surrounding water molecules.
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Affiliation(s)
- Ioannis Skarmoutsos
- Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, Vass. Constantinou 48, GR-116 35 Athens, Greece
| | - Elvira Guardia
- Departament de Física, Universitat Politècnica de Catalunya, Campus Nord-Edifici B4-B5, Jordi Girona 1-3, Barcelona E 08034, Spain
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Soper AK, Skarmoutsos I, Kłos J, Samios J, Marinakis S. A study of Ar-N2 supercritical mixtures using neutron scattering, molecular dynamics simulations and quantum mechanical scattering calculations. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Skarmoutsos I, Mossa S, Guardia E. The effect of polymorphism on the structural, dynamic and dielectric properties of plastic crystal water: A molecular dynamics simulation perspective. J Chem Phys 2019; 150:124506. [PMID: 30927901 DOI: 10.1063/1.5084217] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have employed molecular dynamics simulations based on the TIP4P/2005 water model to investigate the local structural, dynamical, and dielectric properties of the two recently reported body-centered-cubic and face-centered-cubic plastic crystal phases of water. Our results reveal significant differences in the local orientational structure and rotational dynamics of water molecules for the two polymorphs. The probability distributions of trigonal and tetrahedral order parameters exhibit a multi-modal structure, implying the existence of significant local orientational heterogeneities, particularly in the face-centered-cubic phase. The calculated hydrogen bond statistics and dynamics provide further indications of the existence of a strongly heterogeneous and rapidly interconverting local orientational structural network in both polymorphs. We have observed a hindered molecular rotation, much more pronounced in the body-centered-cubic phase, which is reflected by the decay of the fourth-order Legendre reorientational correlation functions and angular Van Hove functions. Molecular rotation, however, is additionally hindered in the high-pressure liquid compared to the plastic crystal phase. The results obtained also reveal significant differences in the dielectric properties of the polymorphs due to the different dipolar orientational correlation characterizing each phase.
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Affiliation(s)
- Ioannis Skarmoutsos
- Departament de Física, Universitat Politècnica de Catalunya, Campus Nord-Edifici B4-B5, Jordi Girona 1-3, Barcelona E-08034, Spain
| | - Stefano Mossa
- Université Grenoble Alpes, CEA, CNRS, INAC-SyMMES, 38000 Grenoble, France
| | - Elvira Guardia
- Departament de Física, Universitat Politècnica de Catalunya, Campus Nord-Edifici B4-B5, Jordi Girona 1-3, Barcelona E-08034, Spain
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Skarmoutsos I, Eddaoudi M, Maurin G. Peculiar Molecular Shape and Size Dependence of the Dynamics of Fluids Confined in a Small-Pore Metal-Organic Framework. J Phys Chem Lett 2018; 9:3014-3020. [PMID: 29763318 DOI: 10.1021/acs.jpclett.8b00855] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Force-field-based molecular dynamics simulations were deployed to systematically explore the dynamics of confined molecules of different shapes and sizes, that is, linear (CO2 and N2) and spherical (CH4) fluids, in a model small pore system, that is, the metal-organic framework SIFSIX-2-Cu-i. These computations unveil an unprecedented molecular symmetry dependence of the translational and rotational dynamics of fluids confined in channel-like nanoporous materials. In particular, this peculiar behavior is reflected by the extremely slow decay of the Legendre reorientational correlation functions of even-parity order for the linear fluids, which is associated with jump-like orientation flips, while the spherical fluid shows a very fast decay taking place on a subpicosecond time scale. Such a fundamental understanding is relevant to diverse disciplines such as in chemistry, physics, biology, and materials science, where diatomic or polyatomic molecules of different shapes/sizes diffuse through nanopores.
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Affiliation(s)
- Ioannis Skarmoutsos
- Institut Charles Gerhardt Montpellier , UMR 5253 CNRS, Université de Montpellier , Place E. Bataillon , 34095 Montpellier Cedex 05 , France
| | - Mohamed Eddaoudi
- Advanced Membranes and Porous Materials Center Division of Physical Sciences and Engineering , King Abdullah University of Science and Technology (KAUST) , P.O. Box 4700, Thuwal 23955-6900 , Kingdom of Saudi Arabia
| | - Guillaume Maurin
- Institut Charles Gerhardt Montpellier , UMR 5253 CNRS, Université de Montpellier , Place E. Bataillon , 34095 Montpellier Cedex 05 , France
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Skarmoutsos I, Guardia E, Samios J. Local structural fluctuations, hydrogen bonding and structural transitions in supercritical water. J Supercrit Fluids 2017. [DOI: 10.1016/j.supflu.2017.08.004] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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