1
|
Li C, Wang Z, Ma L. Drilling accurate nanopores for biosensors by energetic multi-wall carbon nanotubes: a molecular dynamics investigation. J Mol Model 2022; 28:304. [PMID: 36074180 DOI: 10.1007/s00894-022-05276-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 08/11/2022] [Indexed: 11/29/2022]
Abstract
Drilling precise nanopores in thin layers is in rapid demand for biosensing applications. We demonstrate that an energetic multi-wall carbon nanotube (MWCNT) can be a good candidate to fabricate nanopores on graphene from molecular dynamics simulations with a bond-order potential. High-quality nanopores with expected size and smooth margins could be created by an incident nanotube at chosen size and energy. Besides, a nanotube is in advantage of absorbing and translocating many biological macromolecules due to its strong adsorption capacity. It implies a feasible way to drill nanopores and carry big molecules through the fabricated nanopores in one step for fast biosensing applications.
Collapse
Affiliation(s)
- Changsheng Li
- Department of Physics, Hunan University of Arts and Science, Dongting Road 3150, Changde, 415000, Hunan, China.
| | - Zilin Wang
- Department of Physics, Hunan University of Arts and Science, Dongting Road 3150, Changde, 415000, Hunan, China
| | - Lei Ma
- Department of Physics, Hunan University of Arts and Science, Dongting Road 3150, Changde, 415000, Hunan, China
| |
Collapse
|
2
|
Almassov N, Kirkpatrick S, Alsar Z, Serik N, Spitas C, Kostas K, Insepov Z. Crosslinking Multilayer Graphene by Gas Cluster Ion Bombardment. MEMBRANES 2021; 12:27. [PMID: 35054553 PMCID: PMC8781868 DOI: 10.3390/membranes12010027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Revised: 12/19/2021] [Accepted: 12/22/2021] [Indexed: 11/16/2022]
Abstract
In this paper, we demonstrate a new, highly efficient method of crosslinking multilayer graphene, and create nanopores in it by its irradiation with low-energy argon cluster ions. Irradiation was performed by argon cluster ions with an acceleration energy E ≈ 30 keV, and total fluence of argon cluster ions ranging from 1 × 109 to 1 × 1014 ions/cm2. The results of the bombardment were observed by the direct examination of traces of argon-cluster penetration in multilayer graphene, using high-resolution transmission electron microscopy. Further image processing revealed an average pore diameter of approximately 3 nm, with the predominant size corresponding to 2 nm. We anticipate that a controlled cross-linking process in multilayer graphene can be achieved by appropriately varying irradiation energy, dose, and type of clusters. We believe that this method is very promising for modulating the properties of multilayer graphene, and opens new possibilities for creating three-dimensional nanomaterials.
Collapse
Affiliation(s)
- Nurlan Almassov
- School of Engineering and Digital Sciences, Nazarbayev University, Nur-Sultan 010000, Kazakhstan; (N.A.); (Z.A.); (N.S.); (C.S.); (K.K.)
| | | | - Zhanna Alsar
- School of Engineering and Digital Sciences, Nazarbayev University, Nur-Sultan 010000, Kazakhstan; (N.A.); (Z.A.); (N.S.); (C.S.); (K.K.)
| | - Nurzhan Serik
- School of Engineering and Digital Sciences, Nazarbayev University, Nur-Sultan 010000, Kazakhstan; (N.A.); (Z.A.); (N.S.); (C.S.); (K.K.)
| | - Christos Spitas
- School of Engineering and Digital Sciences, Nazarbayev University, Nur-Sultan 010000, Kazakhstan; (N.A.); (Z.A.); (N.S.); (C.S.); (K.K.)
| | - Konstantinos Kostas
- School of Engineering and Digital Sciences, Nazarbayev University, Nur-Sultan 010000, Kazakhstan; (N.A.); (Z.A.); (N.S.); (C.S.); (K.K.)
| | - Zinetula Insepov
- School of Engineering and Digital Sciences, Nazarbayev University, Nur-Sultan 010000, Kazakhstan; (N.A.); (Z.A.); (N.S.); (C.S.); (K.K.)
- School of Nuclear Engineering, Purdue University, West Lafayette, IN 47907, USA
- Department of Condensed Matter Physics, National Nuclear Research University (MEPhI), 115409 Moscow, Russia
| |
Collapse
|
3
|
Shi J, Hu C, Sun S, Song B, Qin QH. Bonding few-layered graphene via collision with high-speed fullerenes. NANOTECHNOLOGY 2021; 32:285704. [PMID: 33831851 DOI: 10.1088/1361-6528/abf5fc] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 04/08/2021] [Indexed: 06/12/2023]
Abstract
Graphene, as a typical two-dimensional material, is popular in the design of nanodevices. The interlayer relative sliding of graphene sheets can significantly affect the effective bending stiffness of the few-layered graphene. For restricting the relative sliding, we adopted the atomic shot peening method to bond the graphene sheets together by ballistic C60 fullerenes from its two surfaces. Collision effects are evaluated via molecular dynamics simulations. Results obtained indicate that the fullerenes' incident velocity has an interval, in which the graphene sheet can be bonded after collision while no atoms on the fullerenes escaping from the graphene ribbon after collision. The limits of the interval increase with the layer number. Within a few picoseconds of collision, a stable carbon network is produced at an impacted area. The graphene sheets are bonded via the network and cannot slide relatively anymore. Conclusions are drawn to show the way of potential applications of the method in manufacturing a new graphene-based two-dimensional material that has a high out-of-plane bending stiffness.
Collapse
Affiliation(s)
- Jiao Shi
- College of Water Resources and Architectural Engineering, Northwest A&F University, Yangling 712100, People's Republic of China
| | - Chunwei Hu
- College of Water Resources and Architectural Engineering, Northwest A&F University, Yangling 712100, People's Republic of China
| | - Sreykeo Sun
- College of Water Resources and Architectural Engineering, Northwest A&F University, Yangling 712100, People's Republic of China
| | - Bo Song
- Institute of Advanced Structure Technology, Beijing Institute of Technology, Beijing 10081, People's Republic of China
| | - Qing-Hua Qin
- Department of Engineering, Shenzhen MSU-BIT University, Shenzhen 518172, People's Republic of China
| |
Collapse
|
4
|
Verkhoturov SV, Gołuński M, Verkhoturov DS, Czerwinski B, Eller MJ, Geng S, Postawa Z, Schweikert EA. Hypervelocity cluster ion impacts on free standing graphene: Experiment, theory, and applications. J Chem Phys 2019; 150:160901. [PMID: 31042896 DOI: 10.1063/1.5080606] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
We present results from experiments and molecular dynamics (MD) simulations obtained with C60 and Au400 impacting on free-standing graphene, graphene oxide (GO), and graphene-supported molecular layers. The experiments were run on custom-built ToF reflectron mass spectrometers with C60 and Au-LMIS sources with acceleration potentials generating 50 keV C60 2+ and 440-540 keV Au400 4+. Bombardment-detection was in the same mode as MD simulation, i.e., a sequence of individual projectile impacts with separate collection/identification of the ejecta from each impact in either the forward (transmission) or backward (reflection) direction. For C60 impacts on single layer graphene, the secondary ion (SI) yields for C2 and C4 emitted in transmission are ∼0.1 (10%). Similar yields were observed for analyte-specific ions from submonolayer deposits of phenylalanine. MD simulations show that graphene acts as a trampoline, i.e., they can be ejected without destruction. Another topic investigated dealt with the chemical composition of free-standing GO. The elemental composition was found to be approximately COH2. We have also studied the impact of Au400 clusters on graphene. Again SI yields were high (e.g., 1.25 C-/impact). 90-100 Au atoms evaporate off the exiting projectile which experiences an energy loss of ∼72 keV. The latter is a summation of energy spent on rupturing the graphene, ejecting carbon atoms and clusters and a dipole projectile/hole interaction. The charge distribution of the exiting projectiles is ∼50% neutrals and ∼25% either negatively or positively charged. We infer that free-standing graphene enables detection of attomole to zeptomole deposits of analyte via cluster-SI mass spectrometry.
Collapse
Affiliation(s)
| | | | - Dmitriy S Verkhoturov
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3144, USA
| | - Bartlomiej Czerwinski
- Applied Physics, Division of Materials Science, Department of Engineering Sciences and Mathematics, Luleå University of Technology, SE-971 87 Luleå, Sweden
| | - Michael J Eller
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3144, USA
| | - Sheng Geng
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3144, USA
| | | | - Emile A Schweikert
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3144, USA
| |
Collapse
|
5
|
Verkhoturov SV, Gołuński M, Verkhoturov DS, Geng S, Postawa Z, Schweikert EA. "Trampoline" ejection of organic molecules from graphene and graphite via keV cluster ions impacts. J Chem Phys 2018; 148:144309. [PMID: 29655321 DOI: 10.1063/1.5021352] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
We present the data on ejection of molecules and emission of molecular ions caused by single impacts of 50 keV C602+ on a molecular layer of deuterated phenylalanine (D8Phe) deposited on free standing, 2-layer graphene. The projectile impacts on the graphene side stimulate the abundant ejection of intact molecules and the emission of molecular ions in the transmission direction. To gain insight into the mechanism of ejection, Molecular Dynamic simulations were performed. It was found that the projectile penetrates the thin layer of graphene, partially depositing the projectile's kinetic energy, and molecules are ejected from the hot area around the hole that is made by the projectile. The yield, Y, of negative ions of deprotonated phenylalanine, (D8Phe-H)-, emitted in the transmission direction is 0.1 ions per projectile impact. To characterize the ejection and ionization of molecules, we have performed the experiments on emission of (D8Phe-H)- from the surface of bulk D8Phe (Y = 0.13) and from the single molecular layer of D8Phe deposited on bulk pyrolytic graphite (Y = 0.15). We show that, despite the similar yields of molecular ions, the scenario of the energy deposition and ejection of molecules is different for the case of graphene due to the confined volume of projectile-analyte interaction. The projectile impact on the graphene-D8Phe sample stimulates the collective radial movement of analyte atoms, which compresses the D8Phe layer radially from the hole. At the same time, this compression bends and stretches the graphene membrane around the hole thus accumulating potential energy. The accumulated potential energy is transformed into the kinetic energy of correlated movement upward for membrane atoms, thus the membrane acts as a trampoline for the molecules. The ejected molecules are effectively ionized; the ionization probability is ∼30× higher compared to that obtained for the bulk D8Phe target. The proposed mechanism of ionization involves tunneling of electrons from the vibrationally excited area around the hole to the molecules. Another proposed mechanism is a direct proton transfer exchange, which is suitable for a bulk target: ions of molecular fragments (i.e., CN-) generated in the impact area interact with intact molecules from the rim of this area. There is a direct proton exchange process for the system D8Phe molecule + CN-.
Collapse
Affiliation(s)
| | | | - Dmitriy S Verkhoturov
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3144, USA
| | - Sheng Geng
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3144, USA
| | | | - Emile A Schweikert
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3144, USA
| |
Collapse
|