1
|
Solem N, Romanzin C, Alcaraz C, Thissen R. An innovative method to identify structural change through ion-molecule collision, making use of Time-Of-Flight measurements and SIMION simulations. JOURNAL OF MASS SPECTROMETRY : JMS 2024; 59:e5066. [PMID: 38888354 DOI: 10.1002/jms.5066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 05/06/2024] [Accepted: 05/23/2024] [Indexed: 06/20/2024]
Abstract
Structural change of ions induced by collision with a neutral has been studied in a guided ion beam tandem mass spectrometer, using Time-Of-Flight measurements and SIMION simulation. The exothermic catalytic isomerization of HOC+ to HCO+ is used to explore the new methodology. Isomerization is catalyzed via a proton transport mechanism through the interplay of a neutral molecule, the catalyst. Four different potential catalysts, Ne, D2, CH4, and C18O, were studied at different collision energies. SIMION simulation of the ion path and collision in the instrument leads to the highlight of a specific signature related to the catalytic isomerization in the time-of-flight spectra. This signature is used to identify the experimental conditions where isomerization takes place. Only C18O, at low collision energies, gives a clear signature of catalytic isomerization, and a quantitative estimate of the catalyzed isomerization cross-section and rate constant is derived. This new methodology is sensitive to clear presence of catalyzed isomerization and can be used in instruments designed for cross-section measurements, provided low collision energy is used and ion bunching is available.
Collapse
Affiliation(s)
- Nicolas Solem
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, Orsay, 91405, France
| | - Claire Romanzin
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, Orsay, 91405, France
| | - Christian Alcaraz
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, Orsay, 91405, France
| | - Roland Thissen
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR8000, Orsay, 91405, France
| |
Collapse
|
2
|
Wang K, Wang Y, Qiao H, Liu J, Zhang H, Li G. Outer Valence Photoionization and Autoionization of Formaldehyde. J Phys Chem A 2022; 126:5559-5564. [PMID: 35952653 DOI: 10.1021/acs.jpca.2c04207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We investigate photoionization from the ground electronic state of the formaldehyde molecule. Both partial cross sections and asymmetry parameters leading to the X2B2, A2B1, C2B2, and D2A1 states of H2CO+ ions are studied in the photon region of 10-90 eV using a multichannel R-matrix method, which uses the configuration interaction (CI) to describe electronic correlation. We check the sensitivity of the results to change descriptions of the continuum, the different partial waves, and the active spaces in the theoretical model. And we obtain the convergent result of the present calculations. Extensive resonance structures near the ionization threshold are observed for the first time. Our predicted total cross sections and asymmetry parameters differ from these obtained by previous theoretical approaches, all of which neglected correlation effects. The present results were found to agree reasonably well with the available experimental results, suggesting the reliability of our calculations.
Collapse
Affiliation(s)
- Kedong Wang
- School of Physics, Henan Normal University, Xinxiang 453007, Peoples Republic of China
| | - Yan Wang
- School of Physics, Henan Normal University, Xinxiang 453007, Peoples Republic of China
| | - Haiyang Qiao
- School of Physics, Henan Normal University, Xinxiang 453007, Peoples Republic of China
| | - Jie Liu
- School of Physics, Henan Normal University, Xinxiang 453007, Peoples Republic of China
| | - Haoxing Zhang
- School of Physics, Henan Normal University, Xinxiang 453007, Peoples Republic of China
| | - Guojun Li
- School of Physics, Henan Normal University, Xinxiang 453007, Peoples Republic of China
| |
Collapse
|
3
|
de Souza GLC, Peterson KA. A high level theory investigation on the lowest-lying ionization potentials of glycine (NH 2CH 2COOH). Phys Chem Chem Phys 2022; 24:17751-17758. [PMID: 35843227 DOI: 10.1039/d2cp02397k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, an investigation on the ionization potentials (IPs) of the glycine molecule (NH2CH2COOH) is presented. IPs ranging up to ∼20 eV were probed for each of the six conformations considered, with the referred threshold being chosen based on both: (i) the observations by recent photoelectron-photoion coincidence (PEPICO) experiments and (ii) the energy range of relevance to the modeling of other photo-induced processes (e.g., photoionization). For computing the IPs, the equation-of-motion ionization potential coupled-cluster with single and double excitations method (EOMIP-CCSD) was employed with large correlation consistent aug-cc-pVXZ and aug-cc-pCVXZ (X = D, T, and Q) basis sets. Extrapolation to the complete basis set limit and consideration of core electron correlation effects were also taken into account. Subsequently, the Feller-Peterson-Dixon (FPD) approach was used for considering all the contributions and to obtain accurate IPs. In addition, coupled-cluster with single and double excitations as well as perturbative triples, CCSD(T), was also used with the aug-cc-pVTZ basis set. When compared to each other, results obtained through the use of these approaches yielded excellent agreement. In general, the outcomes from the present work provide additional information to the insights gathered from the recent PEPICO experiments as well as accurate IPs for all 6 conformations of glycine using an approach based on high levels of theory. Hence, it is expected that other investigations focusing on photo-induced processes originating from NH2CH2COOH (for instance, the computational modeling of its photoionization) will be motivated for study in the future.
Collapse
Affiliation(s)
- Gabriel L C de Souza
- Departamento de Química, Universidade Federal de Mato Grosso, Cuiabá, Mato Grosso, 78060-900, Brazil. .,Department of Chemistry, Washington State University, Pullman, Washington, 99164, USA
| | - Kirk A Peterson
- Department of Chemistry, Washington State University, Pullman, Washington, 99164, USA
| |
Collapse
|
4
|
Abstract
In this work, a computational study on the ionization potentials (IPs) of the formaldehyde trimer, (H2CO)3, is presented. Twelve lowest-lying vertical IPs were determined through the use of the coupled-cluster level of theory using correlation consistent basis sets with extrapolation to the complete basis set limit and consideration of core electron correlation effects. Specifically, the equation-of-motion ionization potential coupled-cluster with single and double excitations method with the aug-cc-pVnZ and aug-cc-pCVnZ (n = D and T) basis sets was used. The Feller-Peterson-Dixon (FPD) composite approach was employed to provide accurate IPs, and eight conformations of (H2CO)3 were considered. The FPD IPs determined for (H2CO)3 were found to be systematically lower than those computed for the dimer and monomer of H2CO in the pattern IP(monomer) > IP(dimer) > IP(trimer) for a given IP. In addition, the IPs calculated when considering only the more stable conformation (C0) are in good agreement with those obtained using the eight conformations of the H2CO trimer, and thus, the actual conformation played only a minor role in determining such properties in the present case. By providing first accurate IP results for the H2CO trimer, we hope to motivate future experimental and computational investigations (e.g., studies involving photoionization) that rely on such quantities.
Collapse
Affiliation(s)
- Gabriel L C de Souza
- Departamento de Química, Universidade Federal de Mato Grosso, Cuiabá, Mato Grosso 78060-900, Brazil
| | - Kirk A Peterson
- Department of Chemistry, Washington State University, Pullman, Washington 99164, USA
| |
Collapse
|
5
|
Li Y, Chen W, Zhu L, Wang H, Guan J, Shan X, Liu F, Wang Z. Intramolecular CH 3-migration-controlled cation reactions in the VUV photochemistry of 2-methyl-3-buten-2-ol investigated by synchrotron photoionization mass spectrometry and theoretical calculations. Phys Chem Chem Phys 2021; 23:10456-10467. [PMID: 33890587 DOI: 10.1039/d1cp00490e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
2-Methyl-3-buten-2-ol (MBO232) is a biogenic volatile organic compound (BVOC), and has a large percentage of emission into the atmosphere. The vacuum ultraviolet (VUV) photochemistry of BVOCs is of great importance for atmospheric chemistry. Studies have been carried out on several BVOCs but have not extended to MBO232. In the present report, the photoionization and dissociation processes of MBO232 in the energy range of 8.0-15.0 eV have been studied by tunable VUV synchrotron radiation coupled with a time-of-flight mass spectrometer. By measuring the photoionization spectra, the adiabatic ionization energy (AIE) of MBO232 and the appearance energies (AEs) of the eight identified fragment ions (i.e., C4H7O+, C3H7O+, C5H9+, C3H6O+, CH3CO+, CH3O+, C4H5+, and C3H5+) were determined. High-level quantum chemistry calculations suggest that there are 3 direct channels and 5 indirect channels via transition states and intermediates accountable for these fragments. Among the reaction channels, the direct elimination of CH3 is the most dominant channel and produces the resonance-stabilized radical cation. Most interestingly, our results show that the CH3 selectively migrates towards the cation, which leads to the different indirect channels. The CH3 migration is a rare process in the dissociative photoionization of metal-free organic molecules. We explain the process by molecular orbital calculations and electron localization function analysis and explore the non-conventional dissociation channels via the CH3 roaming mechanism. We further perform kinetics analysis using RRKM theory for the channels of interest. The activation barrier, and rate constants are analyzed for the branching fractions of the products. These results provide important implications for the VUV photochemistry of BVOCs in the atmosphere.
Collapse
Affiliation(s)
- Yanbo Li
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| | - Weiye Chen
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| | - Long Zhu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| | - Huanhuan Wang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| | - Jiwen Guan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| | - Xiaobin Shan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| | - Fuyi Liu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| | - Zhandong Wang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China.
| |
Collapse
|
6
|
Cruse CA, Pu J, Goodpaster JV. Identifying Thermal Decomposition Products of Nitrate Ester Explosives Using Gas Chromatography-Vacuum Ultraviolet Spectroscopy: An Experimental and Computational Study. APPLIED SPECTROSCOPY 2020; 74:1486-1495. [PMID: 32192365 DOI: 10.1177/0003702820915506] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Analysis of nitrate ester explosives (e.g., nitroglycerine) using gas chromatography-vacuum ultraviolet spectroscopy (GC-VUV) results in their thermal decomposition into nitric oxide, water, carbon monoxide, oxygen, and formaldehyde. These decomposition products exhibit highly structured spectra in the VUV that is not seen in larger molecules. Computational analysis using time-dependent density functional theory (TDDFT) was utilized to investigate the excited states and vibronic transitions of these decomposition products. The experimental and computational results are compared with those in previous literature using synchrotron spectroscopy, electron energy loss spectroscopy (EELS), photoabsorption spectroscopy, and other computational excited state methods. It was determined that a benchtop GC-VUV detector gives comparable results to those previously reported, and TDDFT could predict vibronic spacing and model molecular orbital diagrams.
Collapse
Affiliation(s)
- Courtney A Cruse
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, USA
| | - Jingzhi Pu
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, USA
| | - John V Goodpaster
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, USA
| |
Collapse
|
7
|
Fujimoto MM, Tanaka HK, Marinho RRT, Medina A, Prudente FV, Homem MGP. Cross Sections and Asymmetry Parameters for Formic Acid in the Vacuum-Ultraviolet Energy Range. J Phys Chem A 2020; 124:6478-6485. [DOI: 10.1021/acs.jpca.0c03520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- M. M. Fujimoto
- Departamento de Fı́sica, Universidade Federal do Paraná, 81531-980 Curitiba, PR, Brazil
| | - H. K. Tanaka
- Instituto Federal da Bahia, 45810-000 Porto Seguro, BA, Brazil
- Instituto de Fı́sica, Universidade Federal da Bahia, 40170-115 Salvador, BA, Brazil
| | - R. R. T. Marinho
- Instituto de Fı́sica, Universidade de Brası́lia, Box 4455, 70910-970 Brasília, DF, Brazil
| | - A. Medina
- Instituto de Fı́sica, Universidade Federal do Rio de Janeiro, 21941-972 Rio de Janeiro, RJ, Brazil
| | - F. V. Prudente
- Instituto de Fı́sica, Universidade Federal da Bahia, 40170-115 Salvador, BA, Brazil
| | - M. G. P. Homem
- Departamento de Quı́mica, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil
| |
Collapse
|
8
|
de Souza GLC, Peterson KA. Probing the ionization potentials of the formaldehyde dimer. J Chem Phys 2020; 152:194305. [PMID: 33687222 DOI: 10.1063/5.0009658] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
In this work, we present a computational investigation on the ionization potentials (IPs) of the formaldehyde dimer, (H2CO)2. Twelve lowest lying IPs (corresponding to the entire valence orbitals) for both C2h and Cs symmetry conformers have been computed at the coupled cluster level of theory using large correlation consistent basis sets with extrapolation to the complete basis set limit and consideration of core electron correlation effects. Specifically, the equation-of-motion ionization potential coupled-cluster with single and double (EOMIP-CCSD) excitations method with the aug-cc-pVXZ and aug-cc-pCVXZ (X = T, Q, and 5) basis sets combined with the Feller-Peterson-Dixon approach was employed, as well as CCSD with perturbative triples [CCSD(T)] with the aug-cc-pVTZ basis sets. In general, excellent agreement was observed from the comparison between the results obtained through the use of these approaches. In addition, the IPs for the formaldehyde monomer were also obtained using such methodologies and the results compared with existing experimental data; excellent agreement was also observed in this case. To the best of our knowledge, this work represents the first of its kind to determine the IPs for all these systems using a high level theory approach and is presented to motivate experimental investigations, e.g., studies involving photoionization, particularly for the formaldehyde dimer. The equilibrium binding energy of the C2h dimer is calculated in this work at the CCSD(T)/aug-cc-pVTZ level of theory to be -4.71 kcal/mol. At this same level of theory, the equilibrium isomerization energy between C2h and Cs conformers is 0.76 kcal/mol (Cs conformer being more stable).
Collapse
Affiliation(s)
- Gabriel L C de Souza
- Departamento de Química, Universidade Federal de Mato Grosso, Cuiabá, Mato Grosso 78060-900, Brazil
| | - Kirk A Peterson
- Department of Chemistry, Washington State University, Pullman, Washington 99164, USA
| |
Collapse
|
9
|
Sousa JN, Ribeiro LC, Arruda MS, Homem MGP, Tanaka HK, Credidio BC, Marinho RRT, Medina A, Prazeres I, Santos ACF, Prudente FV. Photoabsorption and Photoionization Cross Sections of Pyridine in the Vacuum-Ultraviolet Energy Range. J Phys Chem A 2019; 123:5164-5170. [DOI: 10.1021/acs.jpca.9b03778] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. N. Sousa
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
- Instituto Federal Baiano, Campus Guanambi, Guanambi 46430-000, BA, Brazil
| | - L. C. Ribeiro
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
| | - Manuela S. Arruda
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
| | - M. G. P. Homem
- Departamento de Química, Universidade Federal de São Carlos, São Carlos 13565-905, SP, Brazil
| | - H. K. Tanaka
- Instituto Federal da Bahia, Campus Porto Seguro, Porto Seguro 45810-000, BA, Brazil
| | - B. C. Credidio
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
| | - R. R. T. Marinho
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
- Instituto de Física, Universidade de Brasilia, Box 4455, Brasília 70910-970, Brazil
| | - Aline Medina
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-909, RJ, Brazil
| | - I. Prazeres
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-909, RJ, Brazil
| | - A. C. F. Santos
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-909, RJ, Brazil
| | - F. V. Prudente
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
| |
Collapse
|