Two-component, ab initio potential energy surface for CO2—H2O, extension to the hydrate clathrate, CO2@(H2O)20, and VSCF/VCI vibrational analyses of both

Theoretical Insights into the Vibrational Structure of Carbon Dioxide Rare-Gas Complexes

Two new flexible-monomer two-body ab initio potential energy surfaces (PESs) for the neon and krypton van der Waals complexes with carbon dioxide were developed, extending our previous work on the Ar-CO2 molecule. The accuracy of the PESs was validated by their agreement with the vibrational spectrum of the rare-gas complexes. The intermolecular and intramolecular vibrational excitation energies were computed at the vibrational self-consistent field and vibrational configuration interaction levels of theory. Overall, the agreement between theory and experiment is excellent throughout the vibrational spectra. The observed slight splitting of the bending modes, resulting from their nondegeneracy in the complexes, is confirmed by our computations, and the results qualitatively agree with the experiment. The splitting increases with increasing polarizability of the rare-gas atom. Additionally, we explain a discrepancy in the mode assignment in the intermolecular region of the neon complex with our VCI character assignment.

MBX: A many-body energy and force calculator for data-driven many-body simulations

Many-Body eXpansion (MBX) is a C++ library that implements many-body potential energy functions (PEFs) within the "many-body energy" (MB-nrg) formalism. MB-nrg PEFs integrate an underlying polarizable model with explicit machine-learned representations of many-body interactions to achieve chemical accuracy from the gas to the condensed phases. MBX can be employed either as a stand-alone package or as an energy/force engine that can be integrated with generic software for molecular dynamics and Monte Carlo simulations. MBX is parallelized internally using Open Multi-Processing and can utilize Message Passing Interface when available in interfaced molecular simulation software. MBX enables classical and quantum molecular simulations with MB-nrg PEFs, as well as hybrid simulations that combine conventional force fields and MB-nrg PEFs, for diverse systems ranging from small gas-phase clusters to aqueous solutions and molecular fluids to biomolecular systems and metal-organic frameworks.

Infrared Spectra of the Water-CO2 Complex in the 4.3-3.6 μm Region and Determination of the Ground State Tunneling Splitting for HDO-CO2

Spectra of water─CO₂ dimers are studied using a tunable mid-infrared source to probe a pulsed slit jet supersonic expansion. H₂O-CO₂ and D₂O-CO₂ are observed in the CO₂ ν₃ fundamental region (≈2350 cm^-1), D₂O-CO₂ is also observed in the D₂O ν₃ fundamental region (≈2790 cm^-1), and HDO-CO₂ is observed in the HDO O-D stretch fundamental region (≈2720 cm^-1), all for the first time in these regions. Analysis of the spectra yields excited state rotational parameters and vibrational shifts. They also yield the first experimental values of the ground state internal rotation tunneling splittings for D₂O-CO₂ (0.003 cm^-1) and HDO-CO₂ (0.0234 cm^-1). The latter value is a direct determination made possible by the reduced symmetry of HDO-CO₂. These results provide stringent and easily interpreted tests for theoretical water-CO₂ potential energy surface calculations.

PESPIP: Software to fit complex molecular and many-body potential energy surfaces with permutationally invariant polynomials

We wish to describe a potential energy surface by using a basis of permutationally invariant polynomials whose coefficients will be determined by numerical regression so as to smoothly fit a dataset of electronic energies as well as, perhaps, gradients. The polynomials will be powers of transformed internuclear distances, usually either Morse variables, exp(-r_i,j/λ), where λ is a constant range hyperparameter, or reciprocals of the distances, 1/r_i,j. The question we address is how to create the most efficient basis, including (a) which polynomials to keep or discard, (b) how many polynomials will be needed, (c) how to make sure the polynomials correctly reproduce the zero interaction at a large distance, (d) how to ensure special symmetries, and (e) how to calculate gradients efficiently. This article discusses how these questions can be answered by using a set of programs to choose and manipulate the polynomials as well as to write efficient Fortran programs for the calculation of energies and gradients. A user-friendly interface for access to monomial symmetrization approach results is also described. The software for these programs is now publicly available.

Data-Driven Many-Body Potential Energy Functions for Generic Molecules: Linear Alkanes as a Proof-of-Concept Application

We present a generalization of the many-body energy (MB-nrg) theoretical/computational framework that enables the development of data-driven potential energy functions (PEFs) for generic covalently bonded molecules, with arbitrary quantum mechanical accuracy. The "nearsightedness of electronic matter" is exploited to define monomers as "natural building blocks" on the basis of their distinct chemical identity. The energy of generic molecules is then expressed as a sum of individual many-body energies of incrementally larger subsystems. The MB-nrg PEFs represent the low-order n-body energies, with n = 1-4, using permutationally invariant polynomials derived from electronic structure data carried out at an arbitrary quantum mechanical level of theory, while all higher-order n-body terms (n > 4) are represented by a classical many-body polarization term. As a proof-of-concept application of the general MB-nrg framework, we present MB-nrg PEFs for linear alkanes. The MB-nrg PEFs are shown to accurately reproduce reference energies, harmonic frequencies, and potential energy scans of alkanes, independently of their length. Since, by construction, the MB-nrg framework introduced here can be applied to generic covalently bonded molecules, we envision future computer simulations of complex molecular systems using data-driven MB-nrg PEFs, with arbitrary quantum mechanical accuracy.

General Many-Body Framework for Data-Driven Potentials with Arbitrary Quantum Mechanical Accuracy: Water as a Case Study

We present a general framework for the development of data-driven many-body (MB) potential energy functions (MB-QM PEFs) that represent the interactions between small molecules at an arbitrary quantum-mechanical (QM) level of theory. As a demonstration, a family of MB-QM PEFs for water is rigorously derived from density functionals belonging to different rungs across Jacob's ladder of approximations within density functional theory (MB-DFT) and from Møller-Plesset perturbation theory (MB-MP2). Through a systematic analysis of individual MB contributions to the interaction energies of water clusters, we demonstrate that all MB-QM PEFs preserve the same accuracy as the corresponding ab initio calculations, with the exception of those derived from density functionals within the generalized gradient approximation (GGA). The differences between the DFT and MB-DFT results are traced back to density-driven errors that prevent GGA functionals from accurately representing the underlying molecular interactions for different cluster sizes and hydrogen-bonding arrangements. We show that this shortcoming may be overcome, within the MB formalism, by using density-corrected functionals (DC-DFT) that provide a more consistent representation of each individual MB contribution. This is demonstrated through the development of a MB-DFT PEF derived from DC-PBE-D3 data, which more accurately reproduce the corresponding ab initio results.

Guest-Host Interactions in Clathrate Hydrates: Benchmark MP2 and CCSD(T)/CBS Binding Energies of CH4, CO2, and H2S in (H2O)20 Cages

We present benchmark binding energies of naturally occurring gas molecules CH₄, CO₂, and H₂S in the small cage, namely, the pentagonal dodecahedron (5¹²) (H₂O)₂₀, which is one of the constituent cages of the 3 major lattices (structures I, II, and H) of clathrate hydrates. These weak interactions require higher levels of electron correlation and converge slowly with an increasing basis set to the complete basis set (CBS) limit, necessitating the use of large basis sets up to the aug-cc-pV5Z and subsequent correction for basis set superposition error (BSSE). For the host hollow (H₂O)₂₀ cages, we have identified a most stable isomer with binding energy of -200.8 ± 2.1 kcal/mol at the CCSD(T)/CBS limit (-199.2 ± 0.5 kcal/mol at the MP2/CBS limit). Additionally, we report converged second order Møller-Plesset (MP2) CBS binding energies for the encapsulation of guests in the (H₂O)₂₀ cage of -4.3 ± 0.1 for CH₄@(H₂O)₂₀, -6.6 ± 0.1 for CO₂@(H₂O)₂₀, and -8.5 ± 0.1 kcal/mol for H₂S@(H₂O)₂₀, respectively. For CH₄@(H₂O)₂₀, exhibiting the weakest encapsulation affinity among the three, we report CCSD(T)/aug-cc-pVTZ binding energies and, based on them, a CCSD(T)/CBS estimate of -4.75 ± 0.1 kcal/mol. To the best of our knowledge, the CCSD(T)/aug-cc-pVTZ calculation for CH₄@(H₂O)₂₀ is the largest one reported to date (168 valence electrons, 1978 basis functions, and the correlation of 84 doubly occupied and 1873 virtual orbitals) and required a scalable implementation of the (T) module on 6144 nodes (350 208 cores) of the "Cori" supercomputer at the National Energy Research Supercomputing Center (NERSC) for a total execution time of 195 min (for the (T) part). These efficient scalable implementations of highly correlated methods offer the capability to obtain long-lasting benchmarks of intermolecular interactions in complex systems. They also provide a path toward parametrizing classical potentials needed to study the dynamical and transport properties in these complex systems as well as assess the accuracy of lower scaling electronic structure methods such as density functional theory (DFT) and MP2 including its spin-biased variants.

Structural Stability of the CO2 @sI Hydrate: a Bottom-Up Quantum Chemistry Approach on the Guest-Cage and Inter-Cage Interactions

Through reliable first-principles computations, we have demonstrated the impact of CO₂ molecules enclathration on the stability of sI clathrate hydrates. Given the delicate balance between the interaction energy components (van der Waals, hydrogen bonds) present on such systems, we follow a systematic bottom-up approach starting from the individual 5¹² and 5¹² 6² sI cages, up to all existing combinations of two-adjacent sI crystal cages to evaluate how such clathrate-like models perform on the evaluation of the guest-host and first-neighbors inter-cage effects, respectively. Interaction and binding energies of the CO₂ occupation of the sI cages were computed using DF-MP2 and different DFT/DFT-D electronic structure methodologies. The performance of selected DFT functionals, together with various semi-classical dispersion corrections schemes, were validated by comparison with reference ab initio DF-MP2 data, as well as experimental data from x-ray and neutron diffraction studies available. Our investigation confirms that the inclusion of the CO₂ in the cage/s is an energetically favorable process, with the CO₂ molecule preferring to occupy the large 5¹² 6² sI cages compared to the 5¹² ones. Further, the present results conclude on the rigidity of the water cages arrangements, showing the importance of the inter-cage couplings in the cluster models under study. In particular, the guest-cage interaction is the key factor for the preferential orientation of the captured CO₂ molecules in the sI cages, while the inter-cage interactions seems to cause minor distortions with the CO₂ guest neighbors interactions do not extending beyond the large 5¹² 6² sI cages. Such findings on these clathrate-like model systems are in accord with experimental observations, drawing a direct relevance to the structural stability of CO₂ @sI clathrates.

Hardware efficient quantum algorithms for vibrational structure calculations

We introduce a framework for the calculation of ground and excited state energies of bosonic systems suitable for near-term quantum devices and apply it to molecular vibrational anharmonic Hamiltonians. Our method supports generic reference modal bases and Hamiltonian representations, including the ones that are routinely used in classical vibrational structure calculations. We test different parametrizations of the vibrational wavefunction, which can be encoded in quantum hardware, based either on heuristic circuits or on the bosonic Unitary Coupled Cluster Ansatz. In particular, we define a novel compact heuristic circuit and demonstrate that it provides a good compromise in terms of circuit depth, optimization costs, and accuracy. We evaluate the requirements, number of qubits and circuit depth, for the calculation of vibrational energies on quantum hardware and compare them with state-of-the-art classical vibrational structure algorithms for molecules with up to seven atoms.

He Inclusion in Ice-like and Clathrate-like Frameworks: A Benchmark Quantum Chemistry Study of Guest-Host Interactions

Energetics and structural properties of selected type and size He@hydrate frameworks, e.g., from regular structured ice channels to clathrate-like cages, are presented from first-principles quantum chemistry methods. The scarcity of information on He@hydrates makes such complexes challenging targets, while their computational study entails an interesting and arduous task. Some of them have been synthesized in the laboratory, which motivates further investigations on their stability. Hence, the main focus is to examine the performance and accuracy of different wave function-based electronic structure methods, such as MP2, CCSD(T), their explicitly correlated (F12) and domain-based local pair-natural orbital (DLPNO) analogs, as well as modern and conventional density functional theory (DFT) approaches, and analytical model potentials available. Different structures are considered, starting from the "simplest system" formed by a noble gas atom (such as He) and one water molecule, followed by the study of the "fundamental units" present in all ice-like and clathrate-like frameworks (such as pentamers and hexamers) and finally the description of interactions in the "building blocks" of three-dimensional (3D) ice channels (e.g., horizontal and perpendicular ice II and I_h) and clathrate-like cages, such as the 5¹² present in the most common sI, sII, and sH clathrate-hydrate structures. The idea is to provide well-converged DLPNO-CCSD(T) and DFMP2/CBS reference datasets that in turn are used to validate how DFT functionals (in total, 29 approaches from generalized-gradient approximation (GGA), meta-GGA, to hybrid and range-separated functionals, including dispersion correction treatments, were checked) and analytical semiempirical/ab initio-based potentials perform compared with high-level alternatives. Within all tested approaches, those best-performing were identified and classified. Most of the DFT/DFT-D functionals, as well as available analytical pairwise model potentials, face difficulties in describing both hydrogen-bonded water frameworks and dispersion bound He-water interactions. Including dispersion corrections yields an overall well-balanced performance for LCωPBE-D3BJ and PBE0-D4 functionals. Such benchmark datasets can benefit research into the development of new cheminformatics models, as can serve to guide and cross-check methodologies, lending increased predicted power to future molecular simulations for investigating the role of structures and phase transitions from nanoscale clusters to macroscopic crystalline structures.

Structural inhomogeneity as a factor promoting the homogenous catalysis of CO2 hydrogenation by (PMe3)4RuH2

During homogenous catalysis by organometallic complexes, the dissociation of a ligand to produce an unsaturated site on the metal center is often invoked as the first step of activation, especially when photo-excitation is involved. In this theoretical study, we demonstrated that under mild conditions, a thermodynamically unstable yet dynamically favorable active intermediate could be produced by the inhomogeneity of the solvent distribution around the catalyst rather than by ligand dissociation. This occurred at the end of the first catalytic cycle when the product was eliminated. The empty site was immediately filled by one of the additive molecules aggregated around the reaction center even when the intermediate complex was unstable, producing a transient and more active catalyst. This process accounted for the accelerated reaction rate observed in the landmark CO₂ hydrogenation catalyzed by (PMe₃)₄RuH₂ in supercritical CO₂ when H₂O, MeOH, or HNMe₂ was added. This also suggests a new way to exploit the structural inhomogeneity around an organometallic complex for the design of superior catalysts.

Assessing the Importance of the H2-H2O-H2O Three-Body Interaction on the Vibrational Frequency Shift of H2 in the sII Clathrate Hydrate and Comparison with Experiment

The vibrational frequency shift of H₂ in the 5¹² cage of the sII clathrate hydrate with and without surrounding water molecules is reported at 0 K, using diffusion Monte Carlo calculations for the ground and first excited vibrational states of H₂. Approximate 1d calculations of the frequency shift are also reported with the H₂ at the equilibrium position in the clathrate hydrate. These calculations make use of full-dimensional potential energy surfaces for the H₂-H₂O 2-body and H₂-H₂O-H₂O 3-body interactions. The inclusion of the 3-body interaction is shown to make roughly a 33% contribution to the frequency shift and to bring the calculated value of -40 ± 4 cm^-1 to within just 3 cm^-1 of the experimental value at 20 K. This level of agreement with experiment may be somewhat fortuitous; however, the importance of the 3-body interaction is firmly established by these calculations. The frequency shift reported here with 2-body interactions does not agree with a previously reported calculation using just 2-body interactions from a different ab initio potential energy surface and with a different method to obtain the frequency shift. A similar 1d calculation of the frequency shift using that potential is reported and agrees to within roughly 10% of the one previously reported. Therefore, this suggests that the difference between the present calculations and the previous one using just 2-body interactions is mainly due to differences in the potential energy surfaces.

Quantum approaches to vibrational dynamics and spectroscopy: is ease of interpretation sacrificed as rigor increases?

The subject of this Perspective is quantum approaches, beyond the harmonic approximation, to vibrational dynamics and IR spectroscopy.

A Systematic Protocol for Benchmarking Guest-Host Interactions by First-Principles Computations: Capturing CO2 in Clathrate Hydrates

Clathrate hydrates of CO₂ have been proposed as potential molecular materials in tackling important environmental problems related to greenhouse gases capture and storage. Despite the increasing interest in such hydrates and their technological applications, a molecular-level understanding of their formation and properties is still far from complete. Modeling interactions is a challenging and computationally demanding task, essential to reliably determine molecular properties. First-principles calculations for the CO₂ guest in all sI, sII, and sH clathrate cages were performed, and the nature of the guest-host interactions, dominated by both hydrogen-bond and van der Waals forces, was systematically investigated. Different families of density functionals, as well as pairwise CO₂ @H₂ O model potentials versus wavefunction-based quantum approaches were studied for CO₂ clathrate-like systems. Benchmark energies for new distance-dependent datasets, consisting of potential energy curves sampling representative configurations of the systems at the repulsive, near-equilibrium, and asymptotic/long-range regions of the full-dimensional surface, were generated, and a general protocol was proposed to assess the accuracy of such conventional and modern approaches at minimum and non-minimum orientations. Our results show that dispersion interactions are important in the guest-host stabilization energies of such clathrate cages, and the encapsulation of the CO₂ into guest-free clathrate cages is always energetically favorable. In addition, the orientation of CO₂ inside each cage was explored, and the ability of current promising approaches to accurately describe non-covalent CO₂ @H₂ O guest-host interactions in sI, sII, and sH clathrates was discussed, providing information for their applicability to future multiscale computer simulations.

Preface: Special Topic: From Quantum Mechanics to Force Fields

This Special Topic issue entitled "From Quantum Mechanics to Force Fields" is dedicated to the ongoing efforts of the theoretical chemistry community to develop a new generation of accurate force fields based on data from high-level electronic structure calculations and to develop faster electronic structure methods for testing and designing force fields as well as for carrying out simulations. This issue includes a collection of 35 original research articles that illustrate recent theoretical advances in the field. It provides a timely snapshot of recent developments in the generation of approaches to enable more accurate molecular simulations of processes important in chemistry, physics, biophysics, and materials science.