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Zapata Trujillo JC, McKemmish LK. VIBFREQ1295: A New Database for Vibrational Frequency Calculations. J Phys Chem A 2022; 126:4100-4122. [PMID: 35723975 DOI: 10.1021/acs.jpca.2c01438] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
High-throughput approaches for producing approximate vibrational spectral data for molecules of astrochemistry interest rely on harmonic frequency calculations using computational quantum chemistry. However, model chemistry recommendations (i.e., a level of theory and basis set pair) for these calculations are not yet available and, thus, thorough benchmarking against comprehensive benchmark databases is needed. Here, we present a new database for vibrational frequency calculations (VIBFREQ1295) storing 1295 experimental fundamental frequencies and CCSD(T)(F12*)/cc-pVDZ-F12 ab initio harmonic frequencies from 141 molecules. VIBFREQ1295's experimental data was complied through a comprehensive review of contemporary experimental data, while the ab initio data was computed here. The chemical space spanned by the molecules chosen is considered in-depth and is shown to have good representation of common organic functional groups and vibrational modes. Scaling factors are routinely used to approximate the effect of anharmonicity and convert computed harmonic frequencies to predicted fundamental frequencies. With our experimental and high-level ab initio data, we find that a single global uniform scaling factor of 0.9617(3) results in median differences of 15.9(5) cm-1. A far superior performance with a median difference of 7.5(5) cm-1 can be obtained, however, by using separate scaling factors (SFs) for three regions: frequencies less than 1000 cm-1 (SF = 0.987(1)), between 1000 and 2000 cm-1 (SF = 0.9727(6)), and above 2000 cm-1 (SF = 0.9564(4)). This sets a lower bound for the performance that could be reliably obtained using scaling of harmonic frequency calculations to predict experimental fundamental frequencies. VIBFREQ1295's most important purpose is to provide a robust database for benchmarking the performance of any vibrational frequency calculations. VIBFREQ1295 data could also be used to train machine-learning models for the prediction of vibrational spectra and as a reference and data starting point for more detailed spectroscopic modeling of particular molecules. The database can be found as part of the Supporting Information for this paper or in the Harvard DataVerse at https://doi.org/10.7910/DVN/VLVNU7.
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Affiliation(s)
| | - Laura K McKemmish
- School of Chemistry, University of New South Wales, 2052 Sydney, Australia
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Bruckhuisen J, Dhont G, Roucou A, Jabri A, Bayoudh H, Tran TT, Goubet M, Martin-Drumel MA, Cuisset A. Intramolecular H-Bond Dynamics of Catechol Investigated by THz High-Resolution Spectroscopy of Its Low-Frequency Modes. Molecules 2021; 26:molecules26123645. [PMID: 34203730 PMCID: PMC8232127 DOI: 10.3390/molecules26123645] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 06/07/2021] [Accepted: 06/10/2021] [Indexed: 11/16/2022] Open
Abstract
Catechol is an oxygenated aromatic volatile organic compound and a biogenic precursor of secondary organic aerosols. Monitoring this compound in the gas phase is desirable due to its appreciable reactivity with tropospheric ozone. From a molecular point of view, this molecule is attractive since the two adjacent hydroxy groups can interchangeably act as donor and acceptor in an intramolecular hydrogen bonding due to the tunnelling between two symmetrically equivalent structures. Using synchrotron radiation, we recorded a rotationally-resolved Fourier Transform far-infrared (IR) spectrum of the torsional modes of the free and bonded -OH groups forming the intramolecular hydrogen bond. Additionally, the room temperature, pure rotational spectrum was measured in the 70–220 GHz frequency range using a millimeter-wave spectrometer. The assignment of these molecular transitions was assisted by anharmonic high-level quantum-chemical calculations. In particular, pure rotational lines belonging to the ground and the four lowest energy, vibrationally excited states were assigned. Splitting due to the tunnelling was resolved for the free -OH torsional state. A global fit combining the far-IR and millimeter-wave data provided the spectroscopic parameters of the low-energy far-IR modes, in particular those characterizing the intramolecular hydrogen bond dynamics.
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Affiliation(s)
- Jonas Bruckhuisen
- UR4493, LPCA, Laboratoire de Physico-Chimie de l’Atmosphère, Université du Littoral Côte d’Opale, F-59140 Dunkerque, France; (J.B.); (G.D.); (A.R.); (A.J.); (H.B.); (T.T.T.)
| | - Guillaume Dhont
- UR4493, LPCA, Laboratoire de Physico-Chimie de l’Atmosphère, Université du Littoral Côte d’Opale, F-59140 Dunkerque, France; (J.B.); (G.D.); (A.R.); (A.J.); (H.B.); (T.T.T.)
| | - Anthony Roucou
- UR4493, LPCA, Laboratoire de Physico-Chimie de l’Atmosphère, Université du Littoral Côte d’Opale, F-59140 Dunkerque, France; (J.B.); (G.D.); (A.R.); (A.J.); (H.B.); (T.T.T.)
| | - Atef Jabri
- UR4493, LPCA, Laboratoire de Physico-Chimie de l’Atmosphère, Université du Littoral Côte d’Opale, F-59140 Dunkerque, France; (J.B.); (G.D.); (A.R.); (A.J.); (H.B.); (T.T.T.)
| | - Hamdi Bayoudh
- UR4493, LPCA, Laboratoire de Physico-Chimie de l’Atmosphère, Université du Littoral Côte d’Opale, F-59140 Dunkerque, France; (J.B.); (G.D.); (A.R.); (A.J.); (H.B.); (T.T.T.)
| | - Thi Thanh Tran
- UR4493, LPCA, Laboratoire de Physico-Chimie de l’Atmosphère, Université du Littoral Côte d’Opale, F-59140 Dunkerque, France; (J.B.); (G.D.); (A.R.); (A.J.); (H.B.); (T.T.T.)
| | - Manuel Goubet
- UMR8523—PhLAM—Physique des Lasers Atomes et Molécules, Université de Lille, CNRS, F-59000 Lille, France;
| | | | - Arnaud Cuisset
- UR4493, LPCA, Laboratoire de Physico-Chimie de l’Atmosphère, Université du Littoral Côte d’Opale, F-59140 Dunkerque, France; (J.B.); (G.D.); (A.R.); (A.J.); (H.B.); (T.T.T.)
- Correspondence:
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Jabri A, Fontanari D, Roucou A, Bray C, Hindle F, Dhont G, Mouret G, Bocquet R, Cuisset A. Conformational landscape and inertial defect of methoxyphenol isomers studied by mm-wave spectroscopy and quantum chemistry calculations. J Chem Phys 2019; 150:104303. [PMID: 30876373 DOI: 10.1063/1.5089426] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Because methoxyphenols (MP) are emitted in significant quantities during biomass fires and contribute to the secondary organic aerosols formation which impacts the climate, their gas phase monitoring in the atmosphere is crucial and requires accurate rovibrational cross sections determined with a good knowledge of their ground state (GS) and vibrationally excited state (ES) molecular parameters. Therefore, the rotational spectra of the two isomers, 2-MP (guaïacol) and 4-MP (mequinol), have been measured in absorption and in emission at room temperature using a frequency multiplication chain and a mm-wave Fourier transform chirped-pulse spectrometer, respectively. Guided by quantum chemistry calculations, the conformational landscape has been characterised and the observation of only one rotamer in the spectra of 2-MP and 4-MP has been explained. For 2-MP, the most stable conformation is justified by an intramolecular O-H⋯OCH3 hydrogen-bond which has been characterised by a topology analysis of the electron density. In a global fit including more than 30 000 line assignments, rotational and quartic centrifugal constants of the GS and the three lowest energy ES have been determined allowing to reproduce the millimeter-wave spectra at the experimental accuracy. The same work has been performed on the cis-rotamer of 4-MP highlighting some perturbations marring the fit quality for two vibrationally ES. Finally, the isomeric dependence of the negative inertial defect ΔI agrees with that of the lowest energy out of plane mode ν45, and the variation of ΔI with the degree of vibrational excitation allows a fine estimation of v45 = 1 vibrational wavenumber.
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Affiliation(s)
- A Jabri
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - D Fontanari
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - A Roucou
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - C Bray
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - F Hindle
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - G Dhont
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - G Mouret
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - R Bocquet
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
| | - A Cuisset
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral Côte d'Opale, 59140 Dunkerque, France
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Roucou A, Fontanari D, Dhont G, Jabri A, Bray C, Hindle F, Mouret G, Bocquet R, Cuisset A. Full Conformational Landscape of 3-Methoxyphenol Revealed by Room Temperature mm-wave Rotational Spectroscopy Supported by Quantum Chemical Calculations. Chemphyschem 2018; 19:1572-1578. [PMID: 29601132 DOI: 10.1002/cphc.201800148] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2018] [Indexed: 11/06/2022]
Abstract
Room temperature millimeter-wave rotational spectroscopy supported by high level of theory calculations have been employed to fully characterise the conformational landscape of 3-Methoxyphenol, a semi-volatile polar oxygenated aromatic compound precursor of secondary organic aerosols in the atmosphere arising from biomass combustion. While previous rotationally-resolved spectroscopic studies in the microwave and in the UV domains failed to observe the complete conformational landscape, the 70-330 GHz rotational spectrum measured in this study reveals the ground state rotational signatures of the four stable conformations theoretically predicted. Moreover, rotational transitions in the lowest energy vibrationally excited states were assigned for two conformers. While the inertial defect of methoxyphenol does not significantly change between conformers and isomers, the excitation of the methoxy out-of-plane bending is the main contribution to the non-planarity of the molecule.
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Affiliation(s)
- Anthony Roucou
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Daniele Fontanari
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Guillaume Dhont
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Atef Jabri
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Cédric Bray
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Francis Hindle
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Gaël Mouret
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Robin Bocquet
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
| | - Arnaud Cuisset
- Laboratoire de Physico-Chimie de l'Atmosphère, CNRS EA-4493, Université du Littoral, Côte d'Opale, 59140, Dunkerque, France
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Roucou A, Kleiner I, Goubet M, Bteich S, Mouret G, Bocquet R, Hindle F, Meerts WL, Cuisset A. Towards the Detection of Explosive Taggants: Microwave and Millimetre-Wave Gas-Phase Spectroscopies of 3-Nitrotoluene. Chemphyschem 2018; 19:1056-1067. [PMID: 29328542 DOI: 10.1002/cphc.201701266] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Revised: 01/12/2018] [Indexed: 11/07/2022]
Abstract
The monitoring of gas-phase mononitrotoluenes is crucial for defence, civil security and environmental interests because they are used as taggant for TNT detection and in the manufacturing of industrial compounds such as dyestuffs. In this study, we have succeeded to measure and analyse at high-resolution a room temperature rotationally resolved millimetre-wave spectrum of meta-nitrotoluene (3-NT). Experimental and theoretical difficulties have been overcome, in particular, those related to the low vapour pressure of 3-NT and to the presence of a CH3 internal rotation in an almost free rotation regime (V3 =6.7659(24) cm-1 ). Rotational spectra have been recorded in the microwave and millimetre-wave ranges using a supersonic jet Fourier Transform microwave spectrometer (Trot <10 K) and a millimetre-wave frequency multiplication chain (T=293 K), respectively. Spectral analysis of pure rotation lines in the vibrational ground state and in the first torsional excited state supported by quantum chemistry calculations permits the rotational energy of the molecule, the hyperfine structure due to the 14 N nucleus, and the internal rotation of the methyl group to be characterised. A line list is provided for future in situ detection.
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Affiliation(s)
- Anthony Roucou
- Laboratoire de Physico-Chimie de l'Atmosphère (LPCA), EA 4493, Université du Littoral Côte d'Opale, Maison de la Recherche en Environnement Industriel 2 (MREI2), 189A, Avenue Maurice Schumann, 59140, Dunkerque, France
| | - Isabelle Kleiner
- Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA), CNRS UMR 7583, Universités Paris-Est Créteil & Paris Diderot, 61 avenue du Général de Gaulle, F-94010, Créteil cedex, France
| | - Manuel Goubet
- Université Lille 1, CNRS, UMR8523-PhLAM-Physique des Lasers Atomes et Molécules, F-59000, Lille, France
| | - Sabath Bteich
- Université Lille 1, CNRS, UMR8523-PhLAM-Physique des Lasers Atomes et Molécules, F-59000, Lille, France
| | - Gael Mouret
- Laboratoire de Physico-Chimie de l'Atmosphère (LPCA), EA 4493, Université du Littoral Côte d'Opale, Maison de la Recherche en Environnement Industriel 2 (MREI2), 189A, Avenue Maurice Schumann, 59140, Dunkerque, France
| | - Robin Bocquet
- Laboratoire de Physico-Chimie de l'Atmosphère (LPCA), EA 4493, Université du Littoral Côte d'Opale, Maison de la Recherche en Environnement Industriel 2 (MREI2), 189A, Avenue Maurice Schumann, 59140, Dunkerque, France
| | - Francis Hindle
- Laboratoire de Physico-Chimie de l'Atmosphère (LPCA), EA 4493, Université du Littoral Côte d'Opale, Maison de la Recherche en Environnement Industriel 2 (MREI2), 189A, Avenue Maurice Schumann, 59140, Dunkerque, France
| | - W Leo Meerts
- Radboud University, Institute for Molecules and Materials, Felix Laboratory, Toernooiveld 7c, 6525, ED, Nijmegen, The Netherlands
| | - Arnaud Cuisset
- Laboratoire de Physico-Chimie de l'Atmosphère (LPCA), EA 4493, Université du Littoral Côte d'Opale, Maison de la Recherche en Environnement Industriel 2 (MREI2), 189A, Avenue Maurice Schumann, 59140, Dunkerque, France
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