Zwitterionization of glycine in water environment: Stabilization mechanism and NMR spectral signatures

Intramolecular and Water Mediated Tautomerism of Solvated Glycine

Understanding tautomerism and characterizing solvent effects on the dynamic processes pose significant challenges. Using enhanced-sampling molecular dynamics based on state-of-the-art deep learning potentials, we investigated the tautomeric equilibria of glycine in water. We observed that the tautomerism between neutral and zwitterionic glycine can occur through both intramolecular and intermolecular proton transfers. The latter proceeds involving a contact anionic-glycine-hydronium ion pair or separate cationic-glycine-hydroxide ion pair. These pathways with comparable barriers contribute almost equally to the reaction flux.

Revisiting the influence of pH on 1JCαH and chemical shifts of glycine and alanine short oligopeptides

The pH dependence of several NMR parameters of glycine and alanine short oligopeptides has been reported previously in different studies. Here we have thoroughly examined, summarized and demonstrated the dependences of 1H, 13C and 15N chemical shifts and protonation states of amino acids using two-dimensional NMR experiments. Nevertheless, 1JCαH one bond spin-spin coupling constants are more informative and convenient for determination of the position and protonation state of glycine and alanine residue in the oligopeptide chain. In particular, for various oligopeptides (up to six residues), it was shown that the pH dependence of 1JCαH of N-terminal glycine and alanine residues is larger than that of C-terminal groups, and in backbone residues, it is not influenced by pH and only slightly depends on the position of the amino acid residue in the chain.

Theoretical Investigation of Glycine Micro-Solvated. Energy and NMR Spin Spin Coupling Constants Calculations

Glycine in its neutral form can exist in the gas phase while its zwitterion form is more stable in water solution, but how many waters are actually necessary to stabilize the zwitterionic structure in the gas phase? Are the intramolecular isotropic spin spin coupling constants sensitive enough to accuse the change in the environment? or the conformer observed? These and related questions have been investigated by a computational study at the level of density functional theory employing the B3LYP functional and the 6-31++G**-J basis set. We found that at least two water molecules explicitly accounted for in the super-molecule structure are necessary to stabilize both conformers of glycine within a water polarizable continuum model. At least half of the SSCCs of both conformers are very stable to changes in the environment and at least four of them differ significantly between Neutral and Zwitterion conformation.

On the degradation pathway of glyphosate and glycine

The degradation in water of the most widespread herbicide, glyphosate, is still under debate. Experimental disagreements on this process exist and there are only a few theoretical studies to support any conclusions. Moreover, the relationship between glyphosate and glycine is underestimated. Besides the structural similarity, glycine is a product of glyphosate degradation; hence, their studies are complementary. In this study, two mechanisms for the decomposition of the glyphosate molecule and glycine molecule in water are proposed. These mechanisms were explored by using quantum mechanical calculations. A combined microsolvation/PCM approach was employed to find and characterize their transition states, by which the reaction pathways were determined via the IRC method. The results have shown that the degradation processes might occur via a C-C bond cleavage, through a concerted mechanism, whereby the proton transfers and the CO2 detachments occur simultaneously. The second mechanism had two consecutive steps, a decarboxylation followed by the proton transfers. The water molecules served as a conduit for the proton transfers, away from the amine group (or the phosphonate, glyphosate case). Their function was to assist the reactions in a water-mediated decarboxylation. In these particular cases, the free energy of activation was 42.68 and 42.28 kcal mol-1 for the glycine structure and the glyphosate structure, respectively. These results agreed with the photodegradation and thermodegradation of glyphosate, as well as with the spontaneous decarboxylation of glycine. A concerted mechanism might be expected to yield C-P and C-N bond cleavages in the glyphosate molecule.