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For: de Oliveira Martins E, Weber G. An asymmetric mesoscopic model for single bulges in RNA. J Chem Phys 2017;147:155102. [PMID: 29055303 DOI: 10.1063/1.5006948] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
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1
Ferreira I, Weber G. VarGibbs Usage in the Optimization of Nearest-Neighbor Parameters and Prediction of Melting Temperature of RNA Duplexes. Methods Mol Biol 2024;2726:15-43. [PMID: 38780726 DOI: 10.1007/978-1-0716-3519-3_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
2
de Oliveira Martins E, Basílio Barbosa V, Weber G. DNA/RNA hybrid mesoscopic model shows strong stability dependence with deoxypyrimidine content and stacking interactions similar to RNA/RNA. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2018.11.015] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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