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Lou H, Cukier RI. A maximum entropy principle approach to a joint probability model for sequences with known neighbor and next neighbor pair probabilities. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2020.110872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Lou H, Cukier RI. Reweighting ensemble probabilities with experimental histogram data constraints using a maximum entropy principle. J Chem Phys 2018; 149:234106. [DOI: 10.1063/1.5050926] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Affiliation(s)
- Hongfeng Lou
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, USA
| | - Robert I. Cukier
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, USA
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Cukier RI. Generating Intrinsically Disordered Protein Conformational Ensembles from a Database of Ramachandran Space Pair Residue Probabilities Using a Markov Chain. J Phys Chem B 2018; 122:9087-9101. [DOI: 10.1021/acs.jpcb.8b05797] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Robert I. Cukier
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, United States
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