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Inflight Polymerase Chain Reaction of samples with drones. Anal Biochem 2020; 616:114098. [PMID: 33388295 DOI: 10.1016/j.ab.2020.114098] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 12/22/2020] [Accepted: 12/26/2020] [Indexed: 11/22/2022]
Abstract
A system devised to conduct Polymerase Chain Reaction (PCR) in-flight on drones that uses the spatial displacement of capillary tubes on thermal blocks kept at 94 °C, 58 °C and 72 °C corresponding to cycling temperatures for denaturation, annealing and extension is demonstrated here. The use of acetal as the thermal block material reduced heat loss and the input power (within 18.5 W) needed to maintain the required temperatures. Tests showed that concentrations of samples down to 1.16 × 106 DNA copies/μL could be significantly and consistently detected above the background emission of the fluorescence signal intensity.
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Cryopreservation without dry ice-induced acidification during sample transport. Anal Biochem 2020; 608:113906. [PMID: 32795454 DOI: 10.1016/j.ab.2020.113906] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 08/03/2020] [Accepted: 08/05/2020] [Indexed: 11/21/2022]
Abstract
Dry ice (solid CO2) remains highly useful when temperature-sensitive biological samples need to be cryogenically transported. CO2 released during the sublimation of dry ice can diffuse through gas permeable receptacle material or any defective seals resulting in potential sample acidification and compromised integrity. In addition, the quality of cryopreservation can be undermined once the dry ice is exhausted. The dry ice carrier design described here has been demonstrated to prevent sublimated CO2 from reaching the samples while maintaining storage temperature below -60 °C for 19 h. It is also equipped with microcontroller-based temperature monitoring for traceability and CO2 gas monitoring for safety.
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Abid HA, Lin ES, Ong JW, Minifie T, Song Z, Liew OW, Ng TW. Polymerase chain reaction thermal cycling using the programmed tilt displacements of capillary tubes. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:104105. [PMID: 33138589 DOI: 10.1063/5.0007879] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 10/06/2020] [Indexed: 06/11/2023]
Abstract
A thermal cycling method, whereby capillary tubes holding polymerase chain reactions are subjected to programmed tilt displacements so that they are moved using gravity over three spatial regions (I, II, and III) kept at different constant temperatures to facilitate deoxyribonucleic acid (DNA) denaturation, annealing, and extension, is described. At tilt speeds in excess of 0.2 rad/s, the standard deviation of static coefficient of friction values was below 0.03, indicating in sync movement of multiple capillary tubes over the holding platform. The travel time during the acceleration phase and under constant velocity between adjacent regions (I to II and II to III) and distant regions (III to I) was 0.03 s and 0.31 s, respectively. The deviations in temperature did not exceed 0.05 °C from the average at the prescribed denaturing, annealing, and extension temperatures applied. DNA amplification was determined by optical readings, the fluorescence signal was found to increase twofold after 30 thermal cycles, and 1.16 × 106 DNA copies/μl could be detected. The approach also overcomes problems associated with thermal inertia, sample adhesion, sample blockage, and handling of the reaction vessels encountered in the other thermal cycling schemes used.
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Affiliation(s)
- Hassan Ali Abid
- Laboratory for Optics and Applied Mechanics, Department of Mechanical and Aerospace Engineering, Monash University, 17 Alliance Lane, Clayton, Victoria3800, Australia
| | - Eric Shen Lin
- Laboratory for Optics and Applied Mechanics, Department of Mechanical and Aerospace Engineering, Monash University, 17 Alliance Lane, Clayton, Victoria3800, Australia
| | - Jian Wern Ong
- Laboratory for Optics and Applied Mechanics, Department of Mechanical and Aerospace Engineering, Monash University, 17 Alliance Lane, Clayton, Victoria3800, Australia
| | - Tristan Minifie
- Laboratory for Optics and Applied Mechanics, Department of Mechanical and Aerospace Engineering, Monash University, 17 Alliance Lane, Clayton, Victoria3800, Australia
| | - Zhixiong Song
- Laboratory for Optics and Applied Mechanics, Department of Mechanical and Aerospace Engineering, Monash University, 17 Alliance Lane, Clayton, Victoria3800, Australia
| | - Oi Wah Liew
- Centre for Translational Medicine, Cardiovascular Research Institute, Yong Loo Lin School of Medicine, National University of Singapore, National University Health System, 14 Medical Drive, Singapore 117599
| | - Tuck Wah Ng
- Laboratory for Optics and Applied Mechanics, Department of Mechanical and Aerospace Engineering, Monash University, 17 Alliance Lane, Clayton, Victoria3800, Australia
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