1
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Kaczun T, Dempwolff AL, Huang X, Gelin MF, Domcke W, Dreuw A. Tuning UV Pump X-ray Probe Spectroscopy on the Nitrogen K Edge Reveals the Radiationless Relaxation of Pyrazine: Ab Initio Simulations Using the Quasiclassical Doorway-Window Approximation. J Phys Chem Lett 2023:5648-5656. [PMID: 37310800 DOI: 10.1021/acs.jpclett.3c01018] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Transient absorption UV pump X-ray probe spectroscopy has been established as a versatile technique for the exploration of ultrafast photoinduced dynamics in valence-excited states. In this work, an ab initio theoretical framework for the simulation of time-resolved UV pump X-ray probe spectra is presented. The method is based on the description of the radiation-matter interaction in the classical doorway-window approximation and a surface-hopping algorithm for the nonadiabatic nuclear excited-state dynamics. Using the second-order algebraic-diagrammatic construction scheme for excited states, UV pump X-ray probe signals were simulated for the carbon and nitrogen K edges of pyrazine, assuming a duration of 5 fs of the UV pump and X-ray probe pulses. It is predicted that spectra measured at the nitrogen K edge carry much richer information about the ultrafast nonadiabatic dynamics in the valence-excited states of pyrazine than those measured at the carbon K edge.
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Affiliation(s)
- Tobias Kaczun
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg D-69120, Germany
| | - Adrian L Dempwolff
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg D-69120, Germany
| | - Xiang Huang
- Department of Chemistry, Technical University of Munich, Garching D-85747, Germany
| | - Maxim F Gelin
- School of Sciences, Hangzhou Dianzi University, Hangzhou 310018, China
| | - Wolfgang Domcke
- Department of Chemistry, Technical University of Munich, Garching D-85747, Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg D-69120, Germany
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2
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Middleton C, Rankine CD, Penfold TJ. An on-the-fly deep neural network for simulating time-resolved spectroscopy: predicting the ultrafast ring opening dynamics of 1,2-dithiane. Phys Chem Chem Phys 2023; 25:13325-13334. [PMID: 37139551 DOI: 10.1039/d3cp00510k] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Revolutionary developments in ultrafast light source technology are enabling experimental spectroscopists to probe the structural dynamics of molecules and materials on the femtosecond timescale. The capacity to investigate ultrafast processes afforded by these resources accordingly inspires theoreticians to carry out high-level simulations which facilitate the interpretation of the underlying dynamics probed during these ultrafast experiments. In this Article, we implement a deep neural network (DNN) to convert excited-state molecular dynamics simulations into time-resolved spectroscopic signals. Our DNN is trained on-the-fly from first-principles theoretical data obtained from a set of time-evolving molecular dynamics. The train-test process iterates for each time-step of the dynamics data until the network can predict spectra with sufficient accuracy to replace the computationally intensive quantum chemistry calculations required to produce them, at which point it simulates the time-resolved spectra for longer timescales. The potential of this approach is demonstrated by probing dynamics of the ring opening of 1,2-dithiane using sulphur K-edge X-ray absorption spectroscopy. The benefits of this strategy will be more markedly apparent for simulations of larger systems which will exhibit a more notable computational burden, making this approach applicable to the study of a diverse range of complex chemical dynamics.
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Affiliation(s)
- Clelia Middleton
- Chemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
| | - Conor D Rankine
- Chemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Thomas J Penfold
- Chemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
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3
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Muchova E, Hollas D, Holland DMP, Bacellar C, Leroy L, Barillot TR, Longetti L, Coreno M, de Simone M, Grazioli C, Chergui M, Ingle RA. Jahn-Teller effects in initial and final states: high-resolution X-ray absorption, photoelectron and Auger spectroscopy of allene. Phys Chem Chem Phys 2023; 25:6733-6745. [PMID: 36799466 DOI: 10.1039/d2cp05299g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
Carbon K-edge resonant Auger spectra of gas-phase allene following excitation of the pre-edge 1s → π* transitions are presented and analysed with the support of EOM-CCSD/cc-pVTZ calculations. X-Ray absorption (XAS), X-ray photoelectron (XPS), valence band and non-resonant Auger spectra are also reanalysed with a series of computational approaches. The results presented demonstrate the importance of including nuclear ensemble effects for simulating X-ray observables and as an effective strategy for capturing Jahn-Teller effects in spectra.
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Affiliation(s)
- Eva Muchova
- Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 166 28 Prague, Czech Republic
| | - Daniel Hollas
- Centre for Computational Chemistry, School of Chemistry, University of Bristol, Bristol, BS8 1TS, UK
| | | | - Camila Bacellar
- Laboratoire de Spectroscopie Ultrarapide, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB, CH-1015 Lausanne, Switzerland
| | - Ludmila Leroy
- Laboratoire de Spectroscopie Ultrarapide, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB, CH-1015 Lausanne, Switzerland
| | - Thomas R Barillot
- Laboratoire de Spectroscopie Ultrarapide, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB, CH-1015 Lausanne, Switzerland
| | - Luca Longetti
- Laboratoire de Spectroscopie Ultrarapide, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB, CH-1015 Lausanne, Switzerland
| | - Marcello Coreno
- ISM-CNR, Istituto di Struttura dei Materiali, LD2 Unit, 34149 Trieste, Italy
| | | | - Cesare Grazioli
- IOM-CNR, Istituto Officina dei Materiali, 34149 Trieste, Italy
| | - Majed Chergui
- Laboratoire de Spectroscopie Ultrarapide, Ecole Polytechnique Fédérale de Lausanne, ISIC, FSB, CH-1015 Lausanne, Switzerland
| | - Rebecca A Ingle
- Department of Chemistry, 20 Gordon Street, London, WC1H 0AJ, UK.
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4
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Hohenstein EG, Yu JK, Bannwarth C, List NH, Paul AC, Folkestad SD, Koch H, Martínez TJ. Predictions of Pre-edge Features in Time-Resolved Near-Edge X-ray Absorption Fine Structure Spectroscopy from Hole-Hole Tamm-Dancoff-Approximated Density Functional Theory. J Chem Theory Comput 2021; 17:7120-7133. [PMID: 34623139 DOI: 10.1021/acs.jctc.1c00478] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Time-resolved near-edge X-ray absorption fine structure (TR-NEXAFS) spectroscopy is a powerful technique for studying photochemical reaction dynamics with femtosecond time resolution. In order to avoid ambiguity in TR-NEXAFS spectra from nonadiabatic dynamics simulations, core- and valence-excited states must be evaluated on equal footing and those valence states must also define the potential energy surfaces used in the nonadiabatic dynamics simulation. In this work, we demonstrate that hole-hole Tamm-Dancoff-approximated density functional theory (hh-TDA) is capable of directly simulating TR-NEXAFS spectroscopies. We apply hh-TDA to the excited-state dynamics of acrolein. We identify two pre-edge features in the oxygen K-edge TR-NEXAFS spectrum associated with the S2 (ππ*) and S1 (nπ*) excited states. We show that these features can be used to follow the internal conversion dynamics between the lowest three electronic states of acrolein. Due to the low, O(N2) apparent computational complexity of hh-TDA and our GPU-accelerated implementation, this method is promising for the simulation of pre-edge features in TR-NEXAFS spectra of large molecules and molecules in the condensed phase.
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Affiliation(s)
- Edward G Hohenstein
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Jimmy K Yu
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States.,Biophysics Program, Stanford University, Stanford, California 94305, United States
| | - Christoph Bannwarth
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Nanna Holmgaard List
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Alexander C Paul
- Department of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway
| | - Sarai D Folkestad
- Department of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway
| | - Henrik Koch
- Department of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway.,Scuola Normale Superiore, Piazza dei Cavaleri 7, 56126 Pisa, Italy
| | - Todd J Martínez
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
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5
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Fouda AEA, Ho PJ. Site-specific generation of excited state wavepackets with high-intensity attosecond x rays. J Chem Phys 2021; 154:224111. [PMID: 34241215 DOI: 10.1063/5.0050891] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
High-intensity attosecond x rays can produce coherent superpositions of valence-excited states through two-photon Raman transitions. The broad-bandwidth, high-field nature of the pulses results in a multitude of accessible excited states. Multiconfigurational quantum chemistry with the time-dependent Schrödinger equation is used to examine population transfer dynamics in stimulated x-ray Raman scattering of the nitric oxide oxygen and nitrogen K-edges. Two pulse schemes initiate wavepackets of different characters and demonstrate how chemical differences between core-excitation pathways affect the dynamics. The population transfer to valence-excited states is found to be sensitive to the electronic structure and pulse conditions, highlighting complexities attributed to the Rabi frequency. The orthogonally polarized two-color-pulse setup has increased selectivity while facilitating longer, less intense pulses than the one-pulse setup. Population transfer in the 1s → Rydberg region is more effective but less selective at the nitrogen K-edge; the selectivity is reduced by double core-excited states. Result interpretation is aided by resonant inelastic x-ray scattering maps.
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Affiliation(s)
- Adam E A Fouda
- Chemical Sciences and Engineering Division, Argonne National Laboratory, 9700 S Cass Avenue, Lemont, Illinois 60439, USA
| | - Phay J Ho
- Chemical Sciences and Engineering Division, Argonne National Laboratory, 9700 S Cass Avenue, Lemont, Illinois 60439, USA
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6
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Rankine CD, Penfold TJ. Progress in the Theory of X-ray Spectroscopy: From Quantum Chemistry to Machine Learning and Ultrafast Dynamics. J Phys Chem A 2021; 125:4276-4293. [DOI: 10.1021/acs.jpca.0c11267] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- C. D. Rankine
- Chemistry—School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, U.K
| | - T. J. Penfold
- Chemistry—School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, U.K
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7
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Besley NA. Modeling of the spectroscopy of core electrons with density functional theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2021. [DOI: 10.1002/wcms.1527] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Nicholas A. Besley
- School of Chemistry, University of Nottingham University Park Nottingham UK
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8
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Fransson T, Brumboiu IE, Vidal ML, Norman P, Coriani S, Dreuw A. XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions. J Chem Theory Comput 2021; 17:1618-1637. [PMID: 33544612 PMCID: PMC8023667 DOI: 10.1021/acs.jctc.0c01082] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Indexed: 01/05/2023]
Abstract
The performance of several standard and popular approaches for calculating X-ray absorption spectra at the carbon, nitrogen, and oxygen K-edges of 40 primarily organic molecules up to the size of guanine has been evaluated, focusing on the low-energy and intense 1s → π* transitions. Using results obtained with CVS-ADC(2)-x and fc-CVS-EOM-CCSD as benchmark references, we investigate the performance of CC2, ADC(2), ADC(3/2), and commonly adopted density functional theory (DFT)-based approaches. Here, focus is on precision rather than on accuracy of transition energies and intensities-in other words, we target relative energies and intensities and the spread thereof, rather than absolute values. The use of exchange-correlation functionals tailored for time-dependent DFT calculations of core excitations leads to error spreads similar to those seen for more standard functionals, despite yielding superior absolute energies. Long-range corrected functionals are shown to perform particularly well compared to our reference data, showing error spreads in energy and intensity of 0.2-0.3 eV and ∼10%, respectively, as compared to 0.3-0.6 eV and ∼20% for a typical pure hybrid. In comparing intensities, state mixing can complicate matters, and techniques to avoid this issue are discussed. Furthermore, the influence of basis sets in high-level ab initio calculations is investigated, showing that reasonably accurate results are obtained with the use of 6-311++G**. We name this benchmark suite as XABOOM (X-ray absorption benchmark of organic molecules) and provide molecular structures and ground-state self-consistent field energies and spectroscopic data. We believe that it provides a good assessment of electronic structure theory methods for calculating X-ray absorption spectra and will become useful for future developments in this field.
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Affiliation(s)
- Thomas Fransson
- Interdisciplinary
Center for Scientific Computing, Ruprecht-Karls
University, Im Neuenheimer
Feld 205, 69120 Heidelberg, Germany
- Fysikum, Stockholm University, Albanova, 10691 Stockholm, Sweden
| | - Iulia E. Brumboiu
- Department
of Theoretical Chemistry and Biology, KTH
Royal Institute of Technology, 10691 Stockholm, Sweden
- Department
of Chemistry, Korea Advanced Institute of
Science and Technology, 34141 Daejeon, Korea
| | - Marta L. Vidal
- DTU
Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, DK-2800 Kongens Lyngby, Denmark
| | - Patrick Norman
- Department
of Theoretical Chemistry and Biology, KTH
Royal Institute of Technology, 10691 Stockholm, Sweden
| | - Sonia Coriani
- DTU
Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, DK-2800 Kongens Lyngby, Denmark
- Department
of Chemistry, NTNU-Norwegian University
of Science and Technology, N-7991 Trondheim, Norway
| | - Andreas Dreuw
- Interdisciplinary
Center for Scientific Computing, Ruprecht-Karls
University, Im Neuenheimer
Feld 205, 69120 Heidelberg, Germany
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9
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Morzan UN, Videla PE, Soley MB, Nibbering ETJ, Batista VS. Vibronic Dynamics of Photodissociating ICN from Simulations of Ultrafast X‐Ray Absorption Spectroscopy. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007192] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Uriel N. Morzan
- Condensed Matter Section The Abdus Salam International Center for Theoretical Physics Strada Costiera 11 34151 Trieste Italy
- Department of Chemistry Yale University P.O. Box 208107 New Haven CT 06520-8107 USA
| | - Pablo E. Videla
- Department of Chemistry Yale University P.O. Box 208107 New Haven CT 06520-8107 USA
- Energy Sciences Institute Yale University P.O. Box 27394 West Haven CT 06516-7394 USA
| | - Micheline B. Soley
- Department of Chemistry Yale University P.O. Box 208107 New Haven CT 06520-8107 USA
- Department of Chemistry and Chemical Biology Harvard University 12 Oxford Street Cambridge MA 02138 USA
- Yale Quantum Institute Yale University P.O. Box 208334 New Haven CT 06520-8263 USA
| | - Erik T. J. Nibbering
- Max Born Institute for Nonlinear Optics and Short Pulse Spectroscopy Max Born Strasse 2A 12489 Berlin Germany
| | - Victor S. Batista
- Department of Chemistry Yale University P.O. Box 208107 New Haven CT 06520-8107 USA
- Energy Sciences Institute Yale University P.O. Box 27394 West Haven CT 06516-7394 USA
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10
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Morzan UN, Videla PE, Soley MB, Nibbering ETJ, Batista VS. Vibronic Dynamics of Photodissociating ICN from Simulations of Ultrafast X-Ray Absorption Spectroscopy. Angew Chem Int Ed Engl 2020; 59:20044-20048. [PMID: 32691867 PMCID: PMC7693200 DOI: 10.1002/anie.202007192] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 06/23/2020] [Indexed: 11/07/2022]
Abstract
Ultrafast UV-pump/soft-X-ray-probe spectroscopy is a subject of great interest since it can provide detailed information about dynamical photochemical processes with ultrafast resolution and atomic specificity. Here, we focus on the photodissociation of ICN in the 1 Π1 excited state, with emphasis on the transient response in the soft-X-ray spectral region as described by the ab initio spectral lineshape averaged over the nuclear wavepacket probability density. We find that the carbon K-edge spectral region reveals a rich transient response that provides direct insights into the dynamics of frontier orbitals during the I-CN bond cleavage process. The simulated UV-pump/soft-X-ray-probe spectra exhibit detailed dynamical information, including a time-domain signature for coherent vibration associated with the photogenerated CN fragment.
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Affiliation(s)
- Uriel N. Morzan
- Condensed Matter SectionThe Abdus Salam International Center for Theoretical PhysicsStrada Costiera 1134151TriesteItaly
- Department of ChemistryYale UniversityP.O. Box 208107New HavenCT06520-8107USA
| | - Pablo E. Videla
- Department of ChemistryYale UniversityP.O. Box 208107New HavenCT06520-8107USA
- Energy Sciences InstituteYale UniversityP.O. Box 27394West HavenCT06516-7394USA
| | - Micheline B. Soley
- Department of ChemistryYale UniversityP.O. Box 208107New HavenCT06520-8107USA
- Department of Chemistry and Chemical BiologyHarvard University12 Oxford StreetCambridgeMA02138USA
- Yale Quantum InstituteYale UniversityP.O. Box 208334New HavenCT06520-8263USA
| | - Erik T. J. Nibbering
- Max Born Institute for Nonlinear Optics and Short Pulse SpectroscopyMax Born Strasse 2A12489BerlinGermany
| | - Victor S. Batista
- Department of ChemistryYale UniversityP.O. Box 208107New HavenCT06520-8107USA
- Energy Sciences InstituteYale UniversityP.O. Box 27394West HavenCT06516-7394USA
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11
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List NH, Dempwolff AL, Dreuw A, Norman P, Martínez TJ. Probing competing relaxation pathways in malonaldehyde with transient X-ray absorption spectroscopy. Chem Sci 2020; 11:4180-4193. [PMID: 34122881 PMCID: PMC8152795 DOI: 10.1039/d0sc00840k] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Excited-state intramolecular hydrogen transfer (ESIHT) is a fundamental reaction relevant to chemistry and biology. Malonaldehyde is the simplest example of ESIHT, yet only little is known experimentally about its excited-state dynamics. Several competing relaxation pathways have been proposed, including internal conversion mediated by ESIHT and C[double bond, length as m-dash]C torsional motion as well as intersystem crossing. We perform an in silico transient X-ray absorption spectroscopy (TRXAS) experiment at the oxygen K-edge to investigate its potential to monitor the proposed ultrafast decay pathways in malonaldehyde upon photoexcitation to its bright S2(ππ*) state. We employ both restricted active space perturbation theory and algebraic-diagrammatic construction for the polarization propagator along interpolated reaction coordinates as well as representative trajectories from ab initio multiple spawning simulations to compute the TRXAS signals from the lowest valence states. Our study suggests that oxygen K-edge TRXAS can distinctly fingerprint the passage through the H-transfer intersection and the concomitant population transfer to the S1(nπ*) state. Potential intersystem crossing to T1(ππ*) is detectable from reappearance of the double pre-edge signature and reversed intensities. Moreover, the torsional deactivation pathway induces transient charge redistribution from the enol side towards the central C-atom and manifests itself as substantial shifts of the pre-edge features. Given the continuous advances in X-ray light sources, our study proposes an experimental route to disentangle ultrafast excited-state decay channels in this prototypical ESIHT system and provides a pathway-specific mapping of the TRXAS signal to facilitate the interpretation of future experiments.
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Affiliation(s)
- Nanna H List
- Department of Chemistry, The PULSE Institute, Stanford University Stanford CA 94305 USA .,SLAC National Accelerator Laboratory 2575 Sand Hill Road Menlo Park CA 94025 USA
| | - Adrian L Dempwolff
- Interdisciplinary Center for Scientific Computing, Heidelberg University Im Neuenheimer Feld 205 D-69120 Heidelberg Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University Im Neuenheimer Feld 205 D-69120 Heidelberg Germany
| | - Patrick Norman
- School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology Sweden
| | - Todd J Martínez
- Department of Chemistry, The PULSE Institute, Stanford University Stanford CA 94305 USA .,SLAC National Accelerator Laboratory 2575 Sand Hill Road Menlo Park CA 94025 USA
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12
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Northey T, Norell J, Fouda AEA, Besley NA, Odelius M, Penfold TJ. Ultrafast nonadiabatic dynamics probed by nitrogen K-edge absorption spectroscopy. Phys Chem Chem Phys 2020; 22:2667-2676. [DOI: 10.1039/c9cp03019k] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Quantum dynamics simulations are used to simulate the ultrafast X-ray Absorption Near-Edge Structure (XANES) spectra of photoexcited pyrazine including two strongly coupled electronically excited states and four normal mode degrees of freedom.
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Affiliation(s)
- T. Northey
- Chemistry-School of Natural and Environmental Sciences
- Newcastle University
- Newcastle upon Tyne
- UK
| | - J. Norell
- Department of Physics
- Stockholm University
- AlbaNova University Center
- Stockholm
- Sweden
| | | | - N. A. Besley
- School of Chemistry
- University of Nottingham
- Nottingham
- UK
| | - M. Odelius
- Department of Physics
- Stockholm University
- AlbaNova University Center
- Stockholm
- Sweden
| | - T. J. Penfold
- Chemistry-School of Natural and Environmental Sciences
- Newcastle University
- Newcastle upon Tyne
- UK
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13
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Hua W, Mukamel S, Luo Y. Transient X-ray Absorption Spectral Fingerprints of the S 1 Dark State in Uracil. J Phys Chem Lett 2019; 10:7172-7178. [PMID: 31625754 DOI: 10.1021/acs.jpclett.9b02692] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Low-lying dark nπ* states play an important role in many photophysical and photochemical processes of organic chromophores. Transient X-ray absorption spectroscopy (TXAS) provides a powerful technique for probing the dynamics of valence states by exciting the electrons into high-lying core excited states. We employ multiconfigurational self-consistent field calculations to investigate the TXAS of uracil along its nonradiative photodecay pathways. An open issue is whether dark nπ* state S1 (n is the lone pair localized on an oxygen atom) is accessible when bright ππ* state S2 is selectively excited. Vertical core excitations were calculated along the potential energy surfaces of the three lowest states, S0-S2, interpolated between two minima and two minimum-energy conical intersections. Computed TXAS data from the C, N, and O K edges show distinct spectral fingerprints of the dark state in all spectral regimes. At the O 1s edge, the nπ* state has a very strong absorption at 526-527 eV, while at the C (N) 1s edge, by contrast, there is almost zero (very weak) absorption at 279-282 eV (397-398 eV). All K-edge spectra can be used to sensitively detect the dark states. Our proposed O 1s feature has already been observed in a recent TXAS experiment with thymine. Natural transition orbital analysis is used to interpret all dominant features of the three lowest-valence states along the reaction coordinate and reveal some important valence fine-structure information from the core excitation.
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Affiliation(s)
- Weijie Hua
- Department of Applied Physics, School of Science , Nanjing University of Science and Technology , 210094 Nanjing , China
- Department of Theoretical Chemistry and Biology, School of Engineering Sciences in Chemistry, Biotechnology and Health , KTH Royal Institute of Technology , S-106 91 Stockholm , Sweden
| | - Shaul Mukamel
- Department of Chemistry and Department of Physics and Astronomy , University of California, Irvine , Irvine , California 92697 , United States
| | - Yi Luo
- Hefei National Laboratory for Physical Science at the Microscale , University of Science and Technology of China , 230026 Hefei , China
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14
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Tsuru S, Vidal ML, Pápai M, Krylov AI, Møller KB, Coriani S. Time-resolved near-edge X-ray absorption fine structure of pyrazine from electronic structure and nuclear wave packet dynamics simulations. J Chem Phys 2019; 151:124114. [PMID: 31575192 DOI: 10.1063/1.5115154] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
As a demonstration of the analysis of the electronic structure and the nuclear dynamics from time-resolved near-edge X-ray absorption fine structure (TR-NEXAFS), we present the TR-NEXAFS spectra of pyrazine following the excitation to the 1B2u(ππ*) state. The spectra are calculated combining the frozen-core/core-valence separated equation-of-motion coupled cluster singles and doubles approach for the spectral signatures and the multiconfiguration time-dependent Hartree method for the wave packet propagation. The population decay from the 1B2u(ππ*) state to the 1B3u(nπ*) and 1Au(nπ*) states, followed by oscillatory flow of population between the 1B3u(nπ*) and 1Au(nπ*) states, is interpreted by means of visualization of the potential energy curves and the reduced nuclear densities. By examining the electronic structure of the three valence-excited states and the final core-excited states, we observe that the population dynamics is explicitly reflected in the TR-NEXAFS spectra, especially when the heteroatoms are selected as the X-ray absorption sites. This work illustrates the feasibility of extracting fine details of molecular photophysical processes from TR-NEXAFS spectra by using currently available theoretical methods.
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Affiliation(s)
- Shota Tsuru
- DTU Chemistry-Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Marta L Vidal
- DTU Chemistry-Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Mátyás Pápai
- DTU Chemistry-Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Anna I Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, USA
| | - Klaus B Møller
- DTU Chemistry-Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Sonia Coriani
- DTU Chemistry-Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
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15
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Pápai M, Rozgonyi T, Penfold TJ, Nielsen MM, Møller KB. Simulation of ultrafast excited-state dynamics and elastic x-ray scattering by quantum wavepacket dynamics. J Chem Phys 2019; 151:104307. [DOI: 10.1063/1.5115204] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Affiliation(s)
- Mátyás Pápai
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kongens Lyngby, Denmark
| | - Tamás Rozgonyi
- Wigner Research Centre for Physics, Hungarian Academy of Sciences, P.O. Box 49, H-1525 Budapest, Hungary
- Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, P.O. Box 286, H-1519 Budapest, Hungary
| | - Thomas J. Penfold
- Chemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom
| | - Martin M. Nielsen
- Department of Physics, Technical University of Denmark, Fysikvej 307, DK-2800 Kongens Lyngby, Denmark
| | - Klaus B. Møller
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kongens Lyngby, Denmark
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16
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Penfold T, Pápai M, Møller K, Worth G. Excited state dynamics initiated by an electromagnetic field within the Variational Multi-Configurational Gaussian (vMCG) method. COMPUT THEOR CHEM 2019. [DOI: 10.1016/j.comptc.2019.05.012] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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