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For: Yu Y, Klauda JB. Modeling Pseudomonas aeruginosa inner plasma membrane in planktonic and biofilm modes. J Chem Phys 2018;149:215102. [DOI: 10.1063/1.5052629] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Ezeduru V, Shao ARQ, Venegas FA, McKay G, Rich J, Nguyen D, Thibodeaux CJ. Defining the Functional Properties of Cyclopropane Fatty Acid Synthase from Pseudomonas aeruginosa PAO1. J Biol Chem 2024:107618. [PMID: 39095026 DOI: 10.1016/j.jbc.2024.107618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 07/20/2024] [Accepted: 07/22/2024] [Indexed: 08/04/2024]  Open
2
Puelles JS, Ghorbani M, Tuck B, Machuca LL, Ackland ML, Chen F, Somers AE, Forsyth M. Effect of cetrimonium carrier micelles on bacterial membranes and extracellular DNA, an in silico study. Sci Rep 2023;13:8041. [PMID: 37198168 DOI: 10.1038/s41598-023-32475-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 03/28/2023] [Indexed: 05/19/2023]  Open
3
Model architectures for bacterial membranes. Biophys Rev 2022;14:111-143. [PMID: 35340604 PMCID: PMC8921416 DOI: 10.1007/s12551-021-00913-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 11/14/2021] [Indexed: 02/06/2023]  Open
4
Hsieh MK, Yu Y, Klauda JB. All-Atom Modeling of Complex Cellular Membranes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022;38:3-17. [PMID: 34962814 DOI: 10.1021/acs.langmuir.1c02084] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
5
Hsieh MK, Klauda JB. Leaflet Asymmetry Modeling in the Lipid Composition of Escherichia coli Cytoplasmic Membranes. J Phys Chem B 2021;126:184-196. [PMID: 34962410 DOI: 10.1021/acs.jpcb.1c07332] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
6
Klauda JB. Considerations of Recent All-Atom Lipid Force Field Development. J Phys Chem B 2021;125:5676-5682. [PMID: 34048653 DOI: 10.1021/acs.jpcb.1c02417] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
7
Yuan Y, Yu Y, Klauda JB. Simulations of Diabetic and Non-Diabetic Peripheral Nerve Myelin Lipid Bilayers. J Phys Chem B 2021;125:6201-6213. [PMID: 34081470 DOI: 10.1021/acs.jpcb.1c01621] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
8
Yu Y, Krämer A, Venable RM, Simmonett AC, MacKerell AD, Klauda JB, Pastor RW, Brooks BR. Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion. J Chem Theory Comput 2021;17:1562-1580. [PMID: 33620214 PMCID: PMC8059446 DOI: 10.1021/acs.jctc.0c01326] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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