1
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Roy P, Sardjan AS, Danowski W, Browne WR, Feringa BL, Meech SR. Substituent effects on first generation photochemical molecular motors probed by femtosecond stimulated Raman. J Chem Phys 2024; 161:074504. [PMID: 39149991 DOI: 10.1063/5.0216442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 07/15/2024] [Indexed: 08/17/2024] Open
Abstract
Unidirectional photochemical molecular motors can act as a power source for molecular machines. The motors operate by successive excited state isomerization and ground state helix inversion reactions, attaining unidirectionality from an interplay of steric strain and stereochemistry. Optimizing the yield of the excited state isomerization reaction is an important goal that requires detailed knowledge of excited state dynamics. Here, we investigate the effect of electron withdrawing and donating substituents on excited state structure and ultrafast dynamics in a series of newly synthesized first generation photochemical molecular motors. All substituents red-shift the absorption spectra, while some modify the Stokes shift and render the fluorescence quantum yield solvent polarity dependent. Raman spectra and density functional theory calculations reveal that the stretching mode of the C=C "axle" in the electronic ground state shows a small red-shift when conjugated with electron withdrawing substituents. Ultrafast fluorescence measurements reveal substituent and solvent polarity effects, with the excited state decay being accelerated by both polar solvent environment and electron withdrawing substituents. Excited state structural dynamics are investigated by fluorescence coherence spectroscopy and femtosecond stimulated Raman spectroscopy. The time resolved Raman measurements are shown to provide structural data specifically on the Franck-Condon excited state. The C=C localized modes have a different substituent dependence compared to the ground state, with the unsubstituted motor having the most red-shifted mode. Such measurements provide valuable new insights into pathways to optimize photochemical molecular motor performance, especially if they can be coupled with high-quality quantum molecular dynamics calculations.
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Affiliation(s)
- Palas Roy
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
- School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Bhubaneswar, Odisha 752050, India
| | - Andy S Sardjan
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, 9747AG Groningen, The Netherlands
| | - Wojciech Danowski
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, 9747AG Groningen, The Netherlands
- Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
| | - Wesley R Browne
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, 9747AG Groningen, The Netherlands
| | - Ben L Feringa
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, 9747AG Groningen, The Netherlands
| | - Stephen R Meech
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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2
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Borsley S, Leigh DA, Roberts BMW. Molecular Ratchets and Kinetic Asymmetry: Giving Chemistry Direction. Angew Chem Int Ed Engl 2024; 63:e202400495. [PMID: 38568047 DOI: 10.1002/anie.202400495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Indexed: 05/03/2024]
Abstract
Over the last two decades ratchet mechanisms have transformed the understanding and design of stochastic molecular systems-biological, chemical and physical-in a move away from the mechanical macroscopic analogies that dominated thinking regarding molecular dynamics in the 1990s and early 2000s (e.g. pistons, springs, etc), to the more scale-relevant concepts that underpin out-of-equilibrium research in the molecular sciences today. Ratcheting has established molecular nanotechnology as a research frontier for energy transduction and metabolism, and has enabled the reverse engineering of biomolecular machinery, delivering insights into how molecules 'walk' and track-based synthesisers operate, how the acceleration of chemical reactions enables energy to be transduced by catalysts (both motor proteins and synthetic catalysts), and how dynamic systems can be driven away from equilibrium through catalysis. The recognition of molecular ratchet mechanisms in biology, and their invention in synthetic systems, is proving significant in areas as diverse as supramolecular chemistry, systems chemistry, dynamic covalent chemistry, DNA nanotechnology, polymer and materials science, molecular biology, heterogeneous catalysis, endergonic synthesis, the origin of life, and many other branches of chemical science. Put simply, ratchet mechanisms give chemistry direction. Kinetic asymmetry, the key feature of ratcheting, is the dynamic counterpart of structural asymmetry (i.e. chirality). Given the ubiquity of ratchet mechanisms in endergonic chemical processes in biology, and their significance for behaviour and function from systems to synthesis, it is surely just as fundamentally important. This Review charts the recognition, invention and development of molecular ratchets, focussing particularly on the role for which they were originally envisaged in chemistry, as design elements for molecular machinery. Different kinetically asymmetric systems are compared, and the consequences of their dynamic behaviour discussed. These archetypal examples demonstrate how chemical systems can be driven inexorably away from equilibrium, rather than relax towards it.
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Affiliation(s)
- Stefan Borsley
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
| | - David A Leigh
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
| | - Benjamin M W Roberts
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
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3
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Roy P, Sardjan AS, Browne WR, Feringa BL, Meech SR. Excited State Dynamics in Unidirectional Photochemical Molecular Motors. J Am Chem Soc 2024; 146:12255-12270. [PMID: 38656968 PMCID: PMC11082934 DOI: 10.1021/jacs.4c01019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 04/05/2024] [Accepted: 04/08/2024] [Indexed: 04/26/2024]
Abstract
Unidirectional photochemically driven molecular motors (PMMs) convert the energy of absorbed light into continuous rotational motion. As such they are key components in the design of molecular machines. The prototypical and most widely employed class of PMMs is the overcrowded alkenes, where rotational motion is driven by successive photoisomerization and thermal helix inversion steps. The efficiency of such PMMs depends upon the speed of rotation, determined by the rate of ground state thermal helix inversion, and the quantum yield of photoisomerization, which is dependent on the excited state energy landscape. The former has been optimized by synthetic modification across three generations of overcrowded alkene PMMs. These improvements have often been at the expense of photoisomerization yield, where there remains room for improvement. In this perspective we review the application of ultrafast spectroscopy to characterize the excited state dynamics in PMMs. These measurements lead to a general mechanism for all generations of PMMs, involving subpicosecond decay of a Franck-Condon excited state to populate a dark excited state which decays within picoseconds via conical intersections with the electronic ground state. The model is discussed in the context of excited state dynamics calculations. Studies of PMM photochemical dynamics as a function of solvent suggest exploitation of intramolecular charge transfer and solvent polarity as a route to controlling photoisomerization yield. A test of these ideas for a first generation motor reveals a high degree of solvent control over isomerization yield. These results suggest a pathway to fine control over the performance of future PMMs.
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Affiliation(s)
- Palas Roy
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K.
- School
of Basic Sciences, Indian Institute of Technology
Bhubaneswar, Bhubaneswar, Odisha 752050, India
| | - Andy S. Sardjan
- Molecular
Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747AG Groningen, The Netherlands
| | - Wesley R. Browne
- Molecular
Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747AG Groningen, The Netherlands
| | - Ben L. Feringa
- Centre
for Systems Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747AG Groningen, The Netherlands
| | - Stephen R. Meech
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K.
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4
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Wen J, Mai S, González L. Excited-State Dynamics Simulations of a Light-Driven Molecular Motor in Solution. J Phys Chem A 2023; 127:9520-9529. [PMID: 37917883 PMCID: PMC10658450 DOI: 10.1021/acs.jpca.3c05841] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 10/14/2023] [Accepted: 10/17/2023] [Indexed: 11/04/2023]
Abstract
Molecular motors, where light can be transformed into motion, are promising in the design of nanomechanical devices. For applications, however, finding relationships between molecular motion and the environment is important. Here, we report the study of excited-state dynamics of an overcrowded alkene in solution using a hybrid quantum mechanics/molecular mechanics (QM/MM) approach combined with excited-state molecular dynamics simulations. Using QM/MM surface-hopping trajectories, we calculated time-resolved emission and transient absorption spectra. These show the rise of a short-lived Franck-Condon state, followed by the formation of a dark state in the first 150 fs before the molecular motor relaxes to the ground state in about 1 ps. From the analysis of radial distribution functions, we infer that the orientation of the solvent with respect to the molecular motor in the electronic excited state is similar to that in the ground state during the photoisomerization.
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Affiliation(s)
- Jin Wen
- State
Key Laboratory for Modification of Chemical Fibers and Polymer Materials,
College of Materials Science and Engineering, Donghua University, Shanghai 201620, China
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, Vienna 1090, Austria
| | - Sebastian Mai
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, Vienna 1090, Austria
| | - Leticia González
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, Vienna 1090, Austria
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5
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Roy P, Sardjan AS, Danowski W, Browne WR, Feringa BL, Meech SR. Control of Photoconversion Yield in Unidirectional Photomolecular Motors by Push-Pull Substituents. J Am Chem Soc 2023; 145:19849-19855. [PMID: 37646616 PMCID: PMC10510317 DOI: 10.1021/jacs.3c06070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Indexed: 09/01/2023]
Abstract
Molecular motors based on the overcrowded alkene motif convert light energy into unidirectional mechanical motion through an excited state isomerization reaction. The realization of experimental control over conversion efficiency in these molecular motors is an important goal. Here, we combine the synthesis of a novel "push-pull" overcrowded alkene motor with photophysical characterization by steady state and ultrafast time-resolved electronic spectroscopy. We show that tuning of the charge transfer character in the excited state has a dramatic effect on the photoisomerization yield, enhancing it to near unity in nonpolar solvents while largely suppressing it in polar solvents. This behavior is explained through reference to solvent- and substituent-dependent potential energy surfaces and their effect on conical intersections to the ground state. These observations offer new routes to the fine control of motor efficiency and introduce additional degrees of freedom in the synthesis and exploitation of light-driven molecular motors.
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Affiliation(s)
- Palas Roy
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K.
- School
of Basic Sciences, Indian Institute of Technology
Bhubaneswar, Bhubaneswar, Odisha 752050, India
| | - Andy S. Sardjan
- Molecular
Inorganic Chemistry, Stratingh Institute
for Chemistry, University of Groningen, 9747 AG Groningen, The Netherlands
| | - Wojciech Danowski
- Centre
for Systems Chemistry, Stratingh Institute
for Chemistry, University of Groningen, 9747 AG Groningen, The Netherlands
- University
of Strasbourg, CNRS, ISIS UMR 7006, 8 allée Gaspard Monge, F-67000 Strasbourg, France
| | - Wesley R. Browne
- Molecular
Inorganic Chemistry, Stratingh Institute
for Chemistry, University of Groningen, 9747 AG Groningen, The Netherlands
| | - Ben L. Feringa
- Centre
for Systems Chemistry, Stratingh Institute
for Chemistry, University of Groningen, 9747 AG Groningen, The Netherlands
| | - Stephen R. Meech
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K.
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6
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Ribetto FD, Deghi SE, Calvo HL, Bustos-Marún RA. A dynamical model for Brownian molecular motors driven by inelastic electron tunneling. J Chem Phys 2022; 157:164102. [DOI: 10.1063/5.0113504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In recent years, several artificial molecular motors driven and controlled by electric currents have been proposed. Similar to Brownian machines, these systems work by turning random inelastic tunneling events into a directional rotation of the molecule. Despite their importance as the ultimate component of future molecular machines, their modeling has not been sufficiently studied. Here, we develop a dynamical model to describe these systems. We illustrate the validity and usefulness of our model by applying it to a well-known molecular motor, showing that the obtained results are consistent with the available experimental data. Moreover, we demonstrate how to use our model to extract some difficult-to-access microscopic parameters. Finally, we include an analysis of the expected effects of current-induced forces (CIFs). Our analysis suggests that, although nonconservative contributions of the CIFs can be important in some scenarios, they do not seem important in the analyzed case. Despite this, the conservative contributions of CIFs could be strong enough to significantly alter the system’s dynamics.
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Affiliation(s)
- Federico D. Ribetto
- Instituto de Física Enrique Gaviola (CONICET) and FaMAF, Universidad Nacional de Córdoba, Córdoba, Argentina
- Departamento de Física, Universidad Nacional de Río Cuarto, Río Cuarto, Argentina
| | - Sebastián E. Deghi
- Instituto de Física Enrique Gaviola (CONICET) and FaMAF, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Hernán L. Calvo
- Instituto de Física Enrique Gaviola (CONICET) and FaMAF, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Raúl A. Bustos-Marún
- Instituto de Física Enrique Gaviola (CONICET) and FaMAF, Universidad Nacional de Córdoba, Córdoba, Argentina
- Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina
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7
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Ikeda T, Nakayama A. Collective bath coordinate mapping of "hierarchy" in hierarchical equations of motion. J Chem Phys 2022; 156:104104. [DOI: 10.1063/5.0082936] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - Akira Nakayama
- Department of Chemical System Engineering, University of Tokyo, Japan
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8
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Ueno S, Tanimura Y. Modeling and Simulating the Excited-State Dynamics of a System with Condensed Phases: A Machine Learning Approach. J Chem Theory Comput 2021; 17:3618-3628. [PMID: 33999606 DOI: 10.1021/acs.jctc.1c00104] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Simulating the irreversible quantum dynamics of exciton- and electron-transfer problems poses a nontrivial challenge. Because the irreversibility of the system dynamics is a result of quantum thermal activation and dissipation caused by the surrounding environment, it is necessary to include infinite environmental degrees of freedom in the simulation. Because the capabilities of full quantum dynamics simulations that include the surrounding molecular degrees of freedom are limited, employing a system-bath model is a practical approach. In such a model, the dynamics of excitons or electrons are described by a system Hamiltonian, while the other degrees of freedom that arise from the environmental molecules are described by a harmonic oscillator bath (HOB) and system-bath interaction parameters. By extending on a previous study of molecular liquids [ J. Chem. Theory Comput. 2020, 16, 2099], here, we construct a system-bath model for exciton- and electron-transfer problems by means of a machine learning approach. We determine both the system and system-bath interaction parameters, including the spectral distribution of the bath, using the electronic excitation energies obtained from a quantum mechanics/molecular mechanics (QM/MM) simulation that is conducted as a function of time. Using the analytical expressions of optical response functions, we calculate linear and two-dimensional electronic spectra (2DES) for indocarbocyanine dimers in methanol. From these results, we demonstrate the capability of our approach to elucidate the nonequilibrium exciton dynamics of a quantum system in a nonintuitive manner.
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9
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Zhang J, Borrelli R, Tanimura Y. Probing photoinduced proton coupled electron transfer process by means of two-dimensional resonant electronic–vibrational spectroscopy. J Chem Phys 2021; 154:144104. [DOI: 10.1063/5.0046755] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Affiliation(s)
- Jiaji Zhang
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Raffaele Borrelli
- DISAFA, University of Torino, Largo Paolo Braccini 2, I-10095 Grugliasco, Italy
| | - Yoshitaka Tanimura
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
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10
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Roy P, Sardjan AS, Danowski W, Browne WR, Feringa BL, Meech SR. Photophysics of First-Generation Photomolecular Motors: Resolving Roles of Temperature, Friction, and Medium Polarity. J Phys Chem A 2021; 125:1711-1719. [PMID: 33606528 DOI: 10.1021/acs.jpca.0c11050] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Light-driven unidirectional molecular rotary motors have the potential to power molecular machines. Consequently, optimizing their speed and efficiency is an important objective. Here, we investigate factors controlling the photochemical yield of the prototypical unidirectional rotary motor, a sterically overcrowded alkene, through detailed investigation of its excited-state dynamics. An isoviscosity analysis of the ultrafast fluorescence decay data resolves friction from barrier effects and reveals a 3.4 ± 0.5 kJ mol-1 barrier to excited-state decay in nonpolar media. Extension of this analysis to polar solvents shows that this barrier height is a strong function of medium polarity and that the decay pathway becomes near barrierless in more polar media. Thus, the properties of the medium can be used as a route for controlling the motor's excited-state dynamics. The connection between these dynamics and the quantum yield of photochemical isomerization is probed. The photochemical quantum yield is shown to be a much weaker function of solvent polarity, and the most efficient excited-state decay pathway does not lead to a strongly enhanced quantum yield for isomerization. These results are discussed in terms of the solvent dependence of the complex multidimensional excited-state reaction coordinate.
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Affiliation(s)
- Palas Roy
- School of Chemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K
| | - Andy S Sardjan
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Wojciech Danowski
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Wesley R Browne
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Ben L Feringa
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Stephen R Meech
- School of Chemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K
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11
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Tanimura Y. Numerically "exact" approach to open quantum dynamics: The hierarchical equations of motion (HEOM). J Chem Phys 2021; 153:020901. [PMID: 32668942 DOI: 10.1063/5.0011599] [Citation(s) in RCA: 140] [Impact Index Per Article: 46.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
An open quantum system refers to a system that is further coupled to a bath system consisting of surrounding radiation fields, atoms, molecules, or proteins. The bath system is typically modeled by an infinite number of harmonic oscillators. This system-bath model can describe the time-irreversible dynamics through which the system evolves toward a thermal equilibrium state at finite temperature. In nuclear magnetic resonance and atomic spectroscopy, dynamics can be studied easily by using simple quantum master equations under the assumption that the system-bath interaction is weak (perturbative approximation) and the bath fluctuations are very fast (Markovian approximation). However, such approximations cannot be applied in chemical physics and biochemical physics problems, where environmental materials are complex and strongly coupled with environments. The hierarchical equations of motion (HEOM) can describe the numerically "exact" dynamics of a reduced system under nonperturbative and non-Markovian system-bath interactions, which has been verified on the basis of exact analytical solutions (non-Markovian tests) with any desired numerical accuracy. The HEOM theory has been used to treat systems of practical interest, in particular, to account for various linear and nonlinear spectra in molecular and solid state materials, to evaluate charge and exciton transfer rates in biological systems, to simulate resonant tunneling and quantum ratchet processes in nanodevices, and to explore quantum entanglement states in quantum information theories. This article presents an overview of the HEOM theory, focusing on its theoretical background and applications, to help further the development of the study of open quantum dynamics.
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Affiliation(s)
- Yoshitaka Tanimura
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
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12
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Yang B, He B, Wan J, Kubal S, Zhao Y. Applications of neural networks to dynamics simulation of Landau-Zener transitions. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2019.110509] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Mangaud E, Lasorne B, Atabek O, Desouter-Lecomte M. Statistical distributions of the tuning and coupling collective modes at a conical intersection using the hierarchical equations of motion. J Chem Phys 2019; 151:244102. [DOI: 10.1063/1.5128852] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Etienne Mangaud
- Physicochimie des Electrolytes et des Nanosystèmes Interfaciaux-UMR 8234 Sorbonne Université, F-75252 Paris, France and Laboratoire Collisions Agrégats Réactivité (IRSAMC), Université Toulouse III Paul Sabatier, UMR 5589, F-31062 Toulouse, France
| | - Benjamin Lasorne
- Institut Charles Gerhardt Montpellier (ICGM), Université de Montpellier, CNRS, ENSCM, F-34095 Montpellier, France
| | - Osman Atabek
- Institut des Sciences Moléculaires d’Orsay (ISMO), Université Paris-Saclay, CNRS, F-91405 Orsay, France
| | - Michèle Desouter-Lecomte
- Institut de Chimie Physique (ICP), Université Paris-Saclay, CNRS, F-91405 Orsay, France and Département de Chimie, Université de Liège, Sart Tilman, B6, B-4000 Liège, Belgium
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14
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Smith LD, Dijkstra AG. Quantum dissipative systems beyond the standard harmonic model: Features of linear absorption and dynamics. J Chem Phys 2019; 151:164109. [PMID: 31675870 DOI: 10.1063/1.5122896] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Current simulations of ultraviolet-visible absorption lineshapes and dynamics of condensed phase systems largely adopt a harmonic description to model vibrations. Often, this involves a model of displaced harmonic oscillators that have the same curvature. Although convenient, for many realistic molecular systems, this approximation no longer suffices. We elucidate nonstandard harmonic and anharmonic effects on linear absorption and dynamics using a stochastic Schrödinger equation approach to account for the environment. First, a harmonic oscillator model with ground and excited potentials that differ in curvature is utilized. Using this model, it is shown that curvature difference gives rise to an additional substructure in the vibronic progression of absorption spectra. This effect is explained and subsequently quantified via a derived expression for the Franck-Condon coefficients. Subsequently, anharmonic features in dissipative systems are studied, using a Morse potential and parameters that correspond to the diatomic molecule H2 for differing displacements and environment interaction. Finally, using a model potential, the population dynamics and absorption spectra for the stiff-stilbene photoswitch are presented and features are explained by a combination of curvature difference and anharmonicity in the form of potential energy barriers on the excited potential.
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Affiliation(s)
- Luke D Smith
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Arend G Dijkstra
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
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15
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Iwamoto Y, Tanimura Y. Open quantum dynamics of a three-dimensional rotor calculated using a rotationally invariant system-bath Hamiltonian: Linear and two-dimensional rotational spectra. J Chem Phys 2019; 151:044105. [DOI: 10.1063/1.5108609] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yuki Iwamoto
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Yoshitaka Tanimura
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
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16
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Schile AJ, Limmer DT. Simulating conical intersection dynamics in the condensed phase with hybrid quantum master equations. J Chem Phys 2019; 151:014106. [DOI: 10.1063/1.5106379] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Addison J. Schile
- Department of Chemistry, University of California, Berkeley, California 94720-1460, USA
- Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720-1460, USA
| | - David T. Limmer
- Department of Chemistry, University of California, Berkeley, California 94720-1460, USA
- Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720-1460, USA
- Kavli Energy NanoSciences Institute, University of California, Berkeley, California 94720-1460, USA
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